Array 1 162322-161498 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGF01000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2166 NODE_1_length_601617_cov_4.52609, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162321 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 162259 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 162198 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 162137 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 162076 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 162015 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 161954 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 161893 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 161832 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 161771 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 161710 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 161649 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 161588 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 161527 29 96.6 0 ............T................ | A [161500] ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179829-178581 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGF01000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2166 NODE_1_length_601617_cov_4.52609, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179828 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 179767 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 179706 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 179645 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 179584 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 179523 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 179462 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 179401 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 179340 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 179279 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 179218 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 179157 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 179096 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 179035 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 178974 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 178913 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 178852 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 178791 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 178730 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 178669 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 178608 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //