Array 1 1803299-1803834 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622200.1 Aggregatibacter segnis ATCC 33393 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1803299 37 100.0 34 ..................................... AAAGGATATTTGATGAATATAAGAGACTTGAATG 1803370 37 100.0 32 ..................................... AGCGAATAAAATTCATCGCCATTATACTCGTG 1803439 37 100.0 34 ..................................... CCAGACGGTTCTTGAAAAGCTTCACACGCAGGAT 1803510 37 100.0 35 ..................................... ATTTGCCGCTCTTTTAAATTGACTTGCGTCTCGTG 1803582 37 91.9 36 ......................T.........G...G TACAGCGCACCGTTTTTGTAAACACGGATGTCATAT 1803655 37 91.9 33 ...........T.......C............G.... TCTGGGTGGTATTTGATTGCCATTCTTTTATAT 1803725 37 94.6 36 ..........A.....................G.... TAAGCTACTTGTTCAGTAGTGATGTTTTAACACACA 1803798 37 94.6 0 ...................C............G.... | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 96.6 34 GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAAC # Left flank : NAAGATAAACAAAGAAAGAGGAAACATGGAATTTATATTAGCTTTTTTAGATGAGTGGTATAAAACTCAATCCATGCGATAAACATGGCGGTATCGCAAGCCGGAAATTGCGAAAAGTACTATCAGCTCTTAATGTTATTTTACAAAAGAACTGTATGCAAACCCACCTCAAAAATACCTTATCACCTATAATATCACGCAACAAAAAATCCAATAACTCTTAGAAAAAGAAAGCCTACCCCAAAGCATTATCCAAACGGACCGATGAATGCACCCTATAAACAGAGATGAAAATGTGGAGAAAGTGAGGTAAAATGGCGCACAAAAATCACATAAAAAATATCGTTTTTTATCACCGCACTTATAACAAACATTAAAAAGAAAATGGATGAAATCGTTCAATATTTAATCAAACCCATACCTTACTTTTCGCATGAGGGGAAAAGTTGGGAAGCGATCCTCCCAAGCCTTATCCATCAAGGCACCAAACCACCCCCGCA # Right flank : CTCATCATCTAAAATCAACCGCCCTTGTGGCGGTTTTCTTTTCTACAAACCAGCATTCCACTCCCATCTCTCCTTTATTCACCATGCTGTTTTCATCAAAACAATATGATGATGAAAACCAAAAGCCTTAAACATACAAACTTGCAAAACCCTCAACGTCCTTAAATTATTACTAAACTAATACCATTAAATTACACAGGAGAAACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1808794-1808268 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622200.1 Aggregatibacter segnis ATCC 33393 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 1808793 32 90.6 38 ............G......GG........... ATATAAAAGAATGGCAATCAAATACCACCCAGAGTTTC 1808723 32 90.6 39 ............G.....TG............ AGGTTTAAATCGTATTTTAGCGCCCATTAAACGCATTTC 1808652 31 87.5 39 ............G......GG..-........ AAATGAACGAAATTAATATCAATATCCCATATTCGTTTC 1808582 32 90.6 39 ...................GGT.......... TGCAAATGCTTGATAGCCGGCAAAGCGGTGATAAGTCTT 1808511 32 87.5 40 .........C.........GGT.......... ACAATAATGGATAAGGTTTATTTAGCACTTTACAAGTCTT 1808439 32 100.0 39 ................................ TGATTTCTGAAATCGAAGCGAAATTAAAGGAGAAGTCTT 1808368 32 100.0 37 ................................ GGTGAACCTGCTAGACTCGAGAAGCTTGAGTAGTCTT 1808299 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 8 32 93.3 39 AATCCCTTTGGAACAGGGCAAGGTCTTTCGAC # Left flank : AATAAATTTATCCTGCCGTTGTTGCGCCAATTTATCGCATAAATTCAAAAGGTTAAGCAACTGACGGGAAAGTTGTACATCACCGCCATTGCCGGACACTTGCGGAAGTTTGGCAAGTTCGTTGTTGAGTTCGTTGCGCAACGCGGCAACATTCACACCGCTTGCGGTTAGAATCGGTGCCACCGAACCGTCTTGTTGATTTAACAAGGCACTCAATAAATGCACCGGTTCAATAAATTGATTATCCTTGCCAATCGCTAAAGATTGCGCTTCAGCAATGGCTTGTTGGAATTTGGTCGTAAATTTTTCAATATTCATAAGTATTTCCTTCTTCGTTCCATGGATGTTCTGTTGAACATTTGTTCGCCAAATTTAAATAAGATCGTTTTGAGGGATTTCAAGAGAAAAAATGAAAAAATTTAGTCTTGCCGATTAATTAGTAGAAACTTGATTGGCGTGATTTATTTAAAAAACACACCGCACTTTGGTGATTGATGGAG # Right flank : TGCGGGGGTGGTTTAGTGCCTTGATGGATAAGGCTTGGGAGGATCGGTTCCCAATTTTTTCCCTCACGCGAAAAGTAGGGTATGAATTTGATTAAATGTTGAACGTTTTTACTCATTTTCTTTTTAATCTTTGTTCAAAGTGCGGTGATAAAAAACGACGTTTTTTATATGACTTTTGTTCGCTATTTTACCTCAGTTTCTCCACATTTTCACCTCTGTTATAACGTTAAACTGATGGGTAATGCTGTCCAAATAATGCCTTGGGGCAGGCTCGCTTTTCCTAAGCGCCATTGAGAGCACTTATGGGGTAAGGGGTAAATTCGGAGATCATCTTCTTTTTTATGGAAAATCTGCATAACCTCCGTTAAGCATTGTGTTAACAATTTTTCTGAACCTTCAAATAAGAAAATACTGTATTGAATTGGGGTGGCATATTTGGTCATGCGGCGATGAATACGCTGGAGACGTTTGGGGTCGGCAATGTCGTAACCAATAAGGTA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCTTTGGAACAGGGCAAGGTCTTTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //