Array 1 262-1249 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAGEZA010000053.1 Pseudomonas aeruginosa strain Patient_3_PostExposure 54648_c0053, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
       262	    28	 100.0	    32	............................	AAGTCGGGATTGGTCGCTTACGGCTACTACAC	
       322	    28	 100.0	    32	............................	GGTGCGCAGGTGCAGACCCCGCATTCGTTTCA	
       382	    28	 100.0	    32	............................	GTTTGGTACCATTATTTCGAGCTCGAGCACGA	
       442	    28	 100.0	    32	............................	TCATACTGGGTGCCGTTCGCCTTCGCGATCGC	
       502	    28	 100.0	    32	............................	TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC	
       562	    28	 100.0	    32	............................	TCGGTGACGCTGGACTGGTCGAGGGGCGTAGA	
       622	    28	 100.0	    32	............................	ATATCCAACACCGGGACGGGAGTCCGATCCTA	
       682	    28	 100.0	    32	............................	AAAACGAGCCACGGGTGTCGGCCTTCGACTCA	
       742	    28	 100.0	    32	............................	TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT	
       802	    28	 100.0	    32	............................	TCGGACAAAGACAGCCTCCGGTCATAGGGTAG	
       862	    28	 100.0	    32	............................	TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT	
       922	    28	  96.4	    32	.............T..............	ATACTGACTCAGCCAGGGAAAAGTCACTTGGA	
       982	    28	  96.4	    32	.............T..............	AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT	
      1042	    28	  96.4	    32	.............T..............	TGGTCGAACAGATGGCGGTCCTCGGCCAACTG	
      1102	    28	  96.4	    32	.............T..............	TCGGCGAGGCGATCGATCATGCGAATCAGCAA	
      1162	    28	  96.4	    32	.............T..............	ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT	
      1222	    28	  96.4	     0	.............T..............	|                               	
==========	======	======	======	============================	================================	==================
        17	    28	  98.7	    32	GTTCACTGCCGTACAGGCAGCTAAGAAA	                                	       

# Left flank :   CGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAGCGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG
# Right flank :  CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGG

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGTACAGGCAGCTAAGAAA
# Alternate repeat :   GTTCACTGCCGTATAGGCAGCTAAGAAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [9,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.51,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//