Array 1 493179-495954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCS010000001.1 Arcanobacterium pluranimalium strain DSM 13483 Ga0451112_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 493179 29 100.0 32 ............................. ACCATCTATAACAGCGCGCACATGCCGGCGTT 493240 29 100.0 32 ............................. AACACGGAAGTGGAAGAATCTCCACAAGGTGA 493301 29 100.0 32 ............................. CAAATTGATAACCGTCTCGTCAGGGCGATCAT 493362 29 100.0 32 ............................. GATTTAGATGAAATTGCGGAATACCAAGAGCG 493423 29 100.0 32 ............................. ATTGGCATTACCCTTTAATTGAGGGGGTAGGT 493484 29 100.0 32 ............................. GTTAGAATTGCCTCATTCATTTTAGCTACCCT 493545 29 100.0 32 ............................. CGCTGGAGAGGTCTGGAACTGAGTACCCTGTA 493606 29 100.0 33 ............................. ATGGCGTTTGCGCTTGGAATTCTATTTGAAATC 493668 29 100.0 33 ............................. AATGCCGAGATTGCTGAAGCAATTTCGAGTGGA 493730 29 100.0 32 ............................. GTCGATCGGTTGAGGATAACCGGCAGTGTAAT 493791 29 100.0 32 ............................. AAAAATTTGGATCGAAGATGGAAAGACGTACT 493852 29 100.0 32 ............................. CTGATCGAAGCTAAAGAATCCGCTAACTAAAC 493913 29 100.0 32 ............................. AGAGACCTATGCACGCGAACTCGAACCAAAAG 493974 29 100.0 32 ............................. CTGGTGGTAGACGGAACCGACACCTACAAGGA 494035 29 100.0 32 ............................. GGCTGAGCAGGGGTTTAGGCTACCGAAACACT 494096 29 100.0 32 ............................. CTCAAACGCCCCGCGAAAGAGCTTGTTAATGC 494157 29 100.0 32 ............................. GCGGATAGTAGAACGCATCAACCGCTCAGCAG 494218 29 100.0 32 ............................. AGGCTTTTTCAGTGGATGCGTGATCGTGGCTA 494279 29 100.0 32 ............................. TCTGAAGCCGTCTTAATATTCGGTGGAATCAG 494340 29 96.6 32 ............................T ATTCCTATCGGTAAGGCTGTGCTTCATGTTGG 494401 29 100.0 32 ............................. GCCAGCCTTCGCCAGTTCCTCAATCGCCGACG 494462 29 100.0 32 ............................. GGACGAGCCAACTTCTTCGCCATCATGCAAGA 494523 29 100.0 32 ............................. GCTATTTAAAAGATAACGAGGGTAAGGATTCT 494584 29 100.0 32 ............................. AGACTTCACAAGGCGAGATTAGGCTTAAGCAA 494645 29 100.0 32 ............................. GGCACCCACGTATCAGTAGTAACCCACGAACC 494706 29 100.0 32 ............................. TGGTTTTGGTGTTGTTGGCATGGCTTTATTTT 494767 29 100.0 32 ............................. AGTATGAGCTTGGCTCACGTCTCATGGACGCA 494828 29 100.0 32 ............................. AATAAAGAAATCTTTAGTAGTCAAAACACCCT 494889 29 96.6 32 ............................T GCTGAGATTGGCCGTATTCGCGCGCGTATGTT 494950 29 100.0 32 ............................. AATGGAATTTAAGTTACCAGAAGAGCCACCTA 495011 29 100.0 32 ............................. ATGAGGGCAAGTATTAGCCGTCGTAAAGCTGA 495072 29 100.0 32 ............................. TCCAATCACGAGCGCTGCCATAACAATGCGTG 495133 29 100.0 32 ............................. CGAGCATACCGCCCACAAGTCCAGCGCCCAAG 495194 29 100.0 32 ............................. ATGGATTGATACGTGGTCTCAGCGCGTAACTA 495255 29 100.0 32 ............................. TTCAAACCAGCCATCGAGATCAGAATCCATAC 495316 29 100.0 32 ............................. GTGCAACACCTTGGAAGCCCTTATCAGACGAA 495377 29 100.0 32 ............................. CTGCGTAAGCGTGCGAAAGAGAAAGAGGAGCA 495438 29 100.0 32 ............................. GGTGGTTCAGGCTCTGGTAAATCACGGTACTG 495499 29 100.0 32 ............................. CACCGCAGGAAGTGCGGGAAGCAATCAAAAAA 495560 29 96.6 32 A............................ GACGCATCCATTTTCGCGCGTTGTGCGTTAGC 495621 29 100.0 32 ............................. TGTTCACGGCTGGCTGCTGGTTGATTTGAAAT 495682 29 100.0 32 ............................. AAGAATTAGCGATACTCAGGCAAGAGGTGCGC 495743 29 100.0 32 ............................. ATCTCCTACCTTAAAAACCTTTGGAAAAGGGT 495804 29 100.0 32 ............................. AAGTGGATTAGTTACGCGCTGAGACCACGTAT 495865 29 96.6 32 ............................T ACGCCAGCCGAGCCAGCACCGCTGGCAGTGCC 495926 29 93.1 0 .........................C..T | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.6 32 CTATTCCCCGCGCATGCGGGGGTATTTCC # Left flank : CGCCGTGATTTGCGCCAGCAGATTCATAAAAGAAAAATTATTGCCGACATGATTGACGCGTTGATGGTTGTTTTGACGCCCCACCTGCCAAATCGTGATGACGATCGTTTGATTGACGACGGCGGCGAGGAAGTTGATGGGCATGTTCAGTATGGGAAGGATGACTGATGTTTGTGGTCGTGTCTACTTCGAACGTGCCGGCGCATATGCATGGGTATTTGTCCCGATTCTTAGCTGAGGCCAATGTGGGACTGTATGTGGGGACGATGTCACGAGTTGTAGTTGAGCGCTTGTGGGAGCGTATTAGTACTGCGGTGGGTGAGGGAAGTATTACAATGGTGATGAGTGATTCTCAACGTGAGCAAGGTTTTTCGGTGTTGACCGCCGGGCCACAGTCTCGCCAAGTTTCAGATTGTGATGGGGTGACTTTGATTTGTGGTAGCCGATTGCAAGTGGCAGAAAAGCGGGATTTTGTGAAATAATTCCGCAGGTGGTTTAGT # Right flank : TAAATTTTAGATCGATCTATTGATTCGCAAAAAGTTTTGTACTGAGTTAGTGAGAAAACTGAAAGACTCTTGTTGGGGGCGGAGCTAGAATTGCGCCGGTCATACAAGAGCCTTAATGAAATTATAGGCAGGCATAAGGAAGAAAACGCAAGCGCAAGCCGCCCGGCATAAAATCGCAGTACGTGTAGCAGTTGTACTTGCGGCTCGAAAAAACACACCTTTTGCTCGGATCTTGTTGGAACGTAAGGTAGTGAGAAAATGTTGGCAATCTCAGTGTGCACGTTGTGCACAGGTCAATTCCGGCGTATGTGGGAGTTTTCCAAACAGCACGCACAATCAAACAGAATGATAGTGAACCAAAGTACGCAAATTCTGATTCCTCACCCCATACGCTTAGCAACCTGATAAACAGTCGCCCCTCTCATCAAGCAGCGCATTCACAGCCTCCACACGCTCCCGCGCCTCAAAACAGCCCCAACACTCGTTGACTTCGCCACAAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGCGCATGCGGGGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 1850180-1855533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCS010000001.1 Arcanobacterium pluranimalium strain DSM 13483 Ga0451112_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1850180 36 100.0 28 .................................... ACTGCTGCTATTGGTGAGCTGGATAAGC 1850244 36 100.0 28 .................................... CGAGCTTCATTGATATTTTGGTTAGCGT 1850308 36 100.0 28 .................................... CTAGCTCGCGCGGGGAATCAAGAACAGA 1850372 36 100.0 28 .................................... ATCACTATCTTTTTGAGTATCCTCAACC 1850436 36 100.0 28 .................................... ATAAGAGTAGGAGTCAGACTTGCAGCGG 1850500 36 100.0 28 .................................... AAACTTGCAGCTTGGCGAAAAAGGCTTG 1850564 36 100.0 28 .................................... TAGATCCGGAACACCCTGCAGGAACTCC 1850628 36 100.0 28 .................................... GTTTCTTTGAAGCCTACAGCGGCTTCGA 1850692 36 100.0 28 .................................... CACGTTCTCCGCGACGCTATTGATTTCT 1850756 36 100.0 28 .................................... CCCTTACCTAAGCATAGGATATGTAGGT 1850820 36 100.0 28 .................................... TTCATTGTCAATGTTTGTCTTGGAATCG 1850884 36 100.0 28 .................................... TCACCACAGATATCGCGTACACTAAACA 1850948 36 100.0 28 .................................... CCTCGTGTGATTCTTATCGATAAGGACG 1851012 36 100.0 28 .................................... ATGGTCGAGCTAGCTGTCACGTGTCTTC 1851076 36 100.0 28 .................................... CGGCCGTGGTTTACGCCAAATTCTGGTA 1851140 36 100.0 28 .................................... TAATAGTCTGCCGACCTCTGCCATTGCT 1851204 36 100.0 28 .................................... CGCTGAGCATTCTAAAGCTCTCGATGAT 1851268 36 100.0 28 .................................... TGGACTTTTAAGCACAAAGCGCCAAAAA 1851332 36 100.0 28 .................................... ATTATCTTCCTGCATGGCTGGTGGAGCT 1851396 36 100.0 28 .................................... CCCGCCACGACGGTGCGAGCACGCCATA 1851460 36 100.0 28 .................................... ACCAAAGGCGACGGCTGCTGTTCCCGCC 1851524 36 100.0 28 .................................... GCTGTTTGTCGCGGTGGCCGCGGCCTGG 1851588 36 100.0 28 .................................... CTCCTGAACCGCTCTGATATCCTTGGTA 1851652 36 100.0 28 .................................... CGCAGCGACTGATTGGCGTATCCGGCTA 1851716 36 100.0 28 .................................... CTGATTGACGACGACGCTCCAATGTGCT 1851780 36 100.0 28 .................................... AGTATCACGCGTAGGTGACGAAACAGCA 1851844 36 100.0 28 .................................... ACGTAATCCTGCTCTACCGGTAGATTCG 1851908 36 100.0 28 .................................... CCCACCAACATGAATGCTGGTGGGTTTT 1851972 36 100.0 28 .................................... AATCAACACTCGTACACACCAAAGTGAC 1852036 36 100.0 28 .................................... TACTGGTAAGAAAGTGCATGCGGCAATT 1852100 36 100.0 28 .................................... TGGCTTAAATACGGGTATGCCATGAACG 1852164 36 100.0 28 .................................... GGTCTGGAAGCTGCCAGAAGCGGCAGAT 1852228 36 100.0 28 .................................... TGACCTCACTGCTAAAGCTTTGAAAGGC 1852292 36 100.0 28 .................................... CGCAAACGGCTCTCTCACACTCGCCGCC 1852356 36 100.0 28 .................................... TAAAGTCTATCCATATCTATGTGGTGTA 1852420 36 100.0 28 .................................... CAATTTTAAAGACCGTGCGTCCGCCCCA 1852484 36 100.0 28 .................................... GCTCGCGCTAGCAATGTTTTTCGGCGGC 1852548 36 100.0 28 .................................... ACATCATCAAGAACTCGTCGAGCTCATC 1852612 36 100.0 28 .................................... TGCCGAAAAGATGGGGGTCTAAAACGTT 1852676 36 100.0 28 .................................... GTTGTGTCGGATTGGTGAAGTACTCGAT 1852740 36 100.0 29 .................................... CTTCGCGGTGACTTTCGCGCCGCTGTTCT 1852805 36 100.0 28 .................................... GTTATTCGAGACCTTGGAAGGGAAACGT 1852869 36 100.0 28 .................................... AGTTTCGATAACTTAAGCTCACTATTTG 1852933 36 100.0 28 .................................... ATGATCTGCTGCGATCCTCACACCGGTT 1852997 36 100.0 28 .................................... CTCATGGACTCACTCGCGCGTGGATTCC 1853061 36 100.0 28 .................................... CGCTCGAAGAGCGGCAGCAAGCACACCG 1853125 36 100.0 28 .................................... TACGTAGCGTTGCGTGGTGGCCGGCGAG 1853189 36 100.0 28 .................................... CATAACCGCTGAGGCTGCCGCTGAATGG 1853253 36 100.0 28 .................................... TTCCATTTTGTCTCCTATCGGAAGTCAG 1853317 36 100.0 29 .................................... AAAGCCGTTTATAGGTATCAAGCGTTCCT 1853382 36 100.0 28 .................................... CTGCGCGATGCGGCCATGCAGGCTGGAG 1853446 36 100.0 28 .................................... GGAGTGAAAGGGGCTTTTGCCAAGATTC 1853510 36 100.0 29 .................................... AGGATTGGAGGCATCGCATGAACTCGCCA 1853575 36 100.0 28 .................................... ACGCCGTTTGCCATCGGTGCCGTATCCG 1853639 36 100.0 28 .................................... CCAGTACGGCTCGGAGGTCGAATCACAC 1853703 36 100.0 28 .................................... CAGCGTGTTCGCGGAGGCGGTGACGCGG 1853767 36 100.0 28 .................................... GGTTACAAATTGGTTGGCATACGTGCAA 1853831 36 100.0 28 .................................... TATCCGATTTTCGTGTATCGGCTTGATC 1853895 36 100.0 28 .................................... CTTACCTAAATGTTCAGAAAATTGCTCT 1853959 36 100.0 28 .................................... CTGTTTTTCAACGCTAGGAAAAAGAAGC 1854023 36 100.0 28 .................................... GTATGTTGGCCGTAAATTAAAGCTGGTT 1854087 36 100.0 28 .................................... CAAGATCGAGACCAAGACCGGACACTCA 1854151 36 100.0 28 .................................... CTACGTTTGTACGCGCACACAGCTAAGA 1854215 36 100.0 28 .................................... CTACGTTTGTACGCGCACACAGCTAAGA 1854279 36 100.0 28 .................................... AGATAAGCTTAATCGTGCTTCTAAGACA 1854343 36 100.0 28 .................................... TGGCGCGCTTGATACTGCTGAATATGCC 1854407 36 100.0 28 .................................... GTATTCTCCATGTCGAATCAGCTGGATT 1854471 36 100.0 28 .................................... GCATTCTTGCGCTGAGCATCAGTACCTT 1854535 36 100.0 28 .................................... TCACAGCAGAAAGCTCTGCAGGGCATTC 1854599 36 100.0 28 .................................... CCTGCTCTCCGGGCGCTCGGCCGTGTAC 1854663 36 100.0 28 .................................... ATCTAAATCGTCACCGCAAATAATTGGC 1854727 36 100.0 28 .................................... AAGCAATCTCAGCAGTGTACGTCACATG 1854791 36 100.0 28 .................................... TGCAGCAGCTCGAGATCGGCAAGCTCGT 1854855 36 100.0 29 .................................... GCGCGGCTGCGTGAGGTAGTTAATCTTGC 1854920 36 100.0 28 .................................... GCTTCGAAAGTTATTGAGGTTGTTCGTG 1854984 36 100.0 28 .................................... TTCGACGGATTCTGCAACTTTTGCAGCA 1855048 36 100.0 28 .................................... ATCCGCTCCGATTACCCTTTTGCCGTTT 1855112 36 100.0 28 .................................... ATCCGCTCCGATTACCCTTTTGCCGTTT 1855176 36 100.0 28 .................................... CAGATCTGGGCCAGGAACCTGCGAGGGG 1855240 36 100.0 28 .................................... CATCAGACTTAGAACAGTCAAGAAACAT 1855304 36 100.0 28 .................................... CACTAAAGCTGATTTTGTCGAGTCTTTA 1855368 36 100.0 29 .................................... AATGGCAAAACATCGGTCTTAAAAAACCG 1855433 36 100.0 28 .................................... TTTCTCAAACCCGGGATTTTTCACCATT 1855497 36 75.0 0 A...C........A...C.A.C...CA......G.. | A [1855526] ========== ====== ====== ====== ==================================== ============================= ================== 84 36 99.7 28 CAAGTCTATCAGGGAGTTAGGTAACTGATTCCCAGC # Left flank : GTGAAACCGGCAATTCAATCCCGTCCGAATTAGTGAATCTTGCCCAACATTACGGGCAATACTTGGAAGGCGATATTAATAAACTTATAGTTAACGTGTGGAATCCCACACTTGCACTAGGAATTTATGATGGCGAGTGAACCAATGTGGTGCGTTGTCATGTTTGACCTTCCGACCAAAACAGCGCAAGACAAACGCGAGTACTCACGTTTTAGAAATTCCCTGCTAGACATAGGTTTCTCCAGGATTCAATACAGCGTGTATGCTCACTATTCCCCCACCGGACTCATTGGCACTCGACTTGTAAAAGCAATCAAAGCAAACCTACCCATTGGTGGCGAAGTGCGTATCTATCACTTGACGGATAAACAGTGGGCAAAAGCTATTCGTTTTTCCAATCATCATGAAGAACTACCCGATCCAGAGCCCGAACAATTGATGATTTTTTAATCAAAACGGCGTCAGAAAGTGGCTTTCTGACGCCGTTTTCTAACTCTCCT # Right flank : CTACCCAACCACTCGACACCACCAAAACAGCCAGAATTCCCCGTTCGTTCAGCCCCTTACTTCTACCCCATCTCACTCATTCACTGAGCAAATACCGAATATACGTCTCCAAAGAACCATCGGCAATTGCTGCATCAACCTCATCTTGCACAGCCGGATTCTCAATCTGGAATAAGTACGTCAAGTCAGATTCTTCGCCACCGCGAGACGCGAGCACTGCTTCGCCGTCTTCCGTGCCTTGATGCCCGATCACCGGCTCCCACCCGCAAGCGCGCACCGCCTCAAAAATGGTCTCCAGACGTCGCTCGTAACTGGCCGTAAATCTCTCACCTTCCCAGCTCCAAGCCGCCTTTTCGCCGTCTGGCTCTCTCGGAAATTCCTTTTCGTTCACGTCACTCACTCCTCTTGAGCTGCAGCTTCCTCAAACACAGCAATAATGCCACGATTGAAAGCTTCGATATCGCGCGGGCTGCGTGAACTCAACAGATTTCCGTCGCGAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAGGGAGTTAGGTAACTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //