Array 1 50253-47592 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOIU010000029.1 Phocaeicola vulgatus strain MSK.17.64 NODE_29_length_68446_cov_196.061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 50252 47 97.9 30 ...A........................................... ACTTGCATTCTTGGCTATTATCAGGCTGGT 50175 47 100.0 30 ............................................... CCTCGGGTGTACGCTTAGCACTCGTTACTG 50098 47 100.0 30 ............................................... CGTTGAGGTTCCCGTACCTTCCAAGATTAT 50021 47 100.0 30 ............................................... TTGTTTATCTATCACCTAAACAGCTTGTTC 49944 47 100.0 30 ............................................... TGTCAGCCGGATATATCAAAGGACTTGTGC 49867 47 100.0 29 ............................................... TACAATGAGGATGATGTTTGCCAATGCTG 49791 47 100.0 30 ............................................... GTTTTTCAGGTAAGAGCATATCCCGTGATA 49714 47 100.0 30 ............................................... ACGATAACAAGTGCCAAGCGCTCTATTTCT 49637 47 100.0 30 ............................................... CCTTCAAACTCAAGGCGCTTTGACAGAGAA 49560 47 100.0 30 ............................................... ATTAACGATTTAAAATTATTATGATTATGC 49483 47 100.0 30 ............................................... AGCAGCAGATAAGGCGCCAATTACAAGTTT 49406 47 100.0 30 ............................................... GAGAAGCCTTGTACAACTTAACTTTCTCTT 49329 47 100.0 30 ............................................... AGTTTGCACCAACCCAACCATTTGCAGTAT 49252 47 100.0 30 ............................................... TATAGTTTAAAACGTCCTCTTTAATTGCTT 49175 47 100.0 29 ............................................... CCGTAAAAATAACTAAACTCGAGTATGGG 49099 47 100.0 30 ............................................... GTTTCATTATTTTTCATAAGTCTAAATTTT 49022 47 100.0 30 ............................................... CCGGCGAGAATATATTACACCAAAGTTTTC 48945 47 100.0 30 ............................................... TTATAACGGCACCAGGACGCAAAACATAAT 48868 47 100.0 30 ............................................... GTGACAATGATTATAGAGTTTGGAGAAATC 48791 47 100.0 30 ............................................... GCAATGCGTGTACCTGTATACTTATTCGTA 48714 47 100.0 30 ............................................... TACTAAATTGAACTACTTCTTTCCAACGCT 48637 47 100.0 29 ............................................... AATATGTTCATTATCATAAGTAAGTGTAA 48561 47 100.0 29 ............................................... TGAATTTGTTGGTAATCTTGGTTTAAGTA 48485 47 100.0 30 ............................................... GTAAGGTTTGCAGCTGAAGAAGCTATAGCA 48408 47 100.0 30 ............................................... GCAGGAGCCGTTGCCTTGCGCGCGGGGCGC 48331 47 100.0 30 ............................................... TAAGGCTAATCCTATTCTTACTGATGATGA 48254 47 100.0 30 ............................................... AATTAAGCGAAGCCCCTAGTTGTGTGCGAA 48177 47 100.0 30 ............................................... CGAACTCTTCACATAGTTCTGACAGCCCAA 48100 47 100.0 30 ............................................... ATCAGCATGGCAGGGTAATCCTGCCTTGCT 48023 47 100.0 30 ............................................... CTTCTTTGTAATGTCCATAATCTTTTTGTT 47946 47 100.0 30 ............................................... GTGGCGAGTTTGCCCATTTACTGTCTGCAA 47869 47 100.0 30 ............................................... AGTTAGAGGGTGGTCGTGATGAGGCGGTTG 47792 47 100.0 30 ............................................... TCAGTTTCTAATTGGATATACCCTTTTCCT 47715 47 100.0 30 ............................................... TAATCTTTCTTTTCTTCCTGGCTCTGTCAC 47638 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 35 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGGTTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : GGAATATATGTTACAAACTAATTACCAATTAGTTACACATATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTCTGAAACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //