Array 1 5376-6623 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVD02000031.1 Salmonella enterica subsp. enterica serovar Corvallis strain HIY0169 NODE_31_length_56784_cov_40.196869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5376 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 5437 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 5498 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 5559 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 5620 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 5681 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 5742 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 5803 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 5864 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 5925 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 5986 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 6047 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 6108 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 6169 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 6230 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 6291 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 6352 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 6413 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 6474 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 6535 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6596 28 86.2 0 .........A..T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23170-26799 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVD02000031.1 Salmonella enterica subsp. enterica serovar Corvallis strain HIY0169 NODE_31_length_56784_cov_40.196869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23170 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 23231 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 23292 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 23353 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 23414 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 23475 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 23536 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 23597 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 23658 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 23719 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 23780 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 23841 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 23902 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 23963 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 24024 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 24085 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 24146 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 24207 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 24268 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 24329 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 24390 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 24451 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 24512 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 24573 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 24634 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 24695 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 24756 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 24817 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 24878 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 24939 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 25000 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 25061 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 25122 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 25183 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 25244 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 25305 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 25366 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 25427 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 25488 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 25549 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 25610 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 25671 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 25732 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 25793 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 25854 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 25915 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 25976 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 26037 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 26098 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 26159 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 26220 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 26281 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 26342 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 26403 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 26464 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 26525 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 26586 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 26647 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 26708 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 26770 29 96.6 0 ............T................ | A [26797] ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //