Array 1 53536-55780 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBFV01000005.1 Legionella pneumophila strain NMB001869 503188-08_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 53536 32 100.0 35 ................................ CAATCAAAGTGATTAAATCCGAAAATCAATCCACA 53603 32 100.0 37 ................................ TAGCCGAACAAGCCATGTATGCGTACCCACGTGGAAA 53672 32 100.0 34 ................................ CGCTATCGAGCTATTAAAAATAAACAAAACAGCG 53738 32 100.0 35 ................................ ATTCTCAGTAATTGTTTTTACTCTTGTGTTATTAT 53805 32 100.0 35 ................................ AATTTTCTCAACATTCAGTAAGTGAGGTTTTGCAG 53872 32 100.0 35 ................................ ATGCCTAACAGTAGCTAGCATATACGCAGCATGGC 53939 32 100.0 35 ................................ CTGTTATTGGTTGCATTGTTTTGTAGTGAGATTCG 54006 32 100.0 35 ................................ TGTTGGTATAGAAGAACCATCCCATAATTGATTAA 54073 32 100.0 35 ................................ TTATTTAAAATTTGGCGTAGACTGGTAGGTCAATG 54140 32 100.0 33 ................................ ACTACTAATATAGAAGTTATAGACTTAGATAAA 54205 32 100.0 36 ................................ ATTTTTATCGCGCACTATCCAAATTAAGTCTGCGAT 54273 32 100.0 36 ................................ CCCCGATCCTATTGTCGGTAAACCCGACGCACTAGT 54341 32 100.0 36 ................................ CGATAAAGCCCGCATGGAATCATTAAAACCCTTCGC 54409 32 100.0 35 ................................ ACACCATAGGGTGGGTCTGTAATCATTGTGTTCGG 54476 32 100.0 36 ................................ TAAGGAGAATATAATGCAAACTTTACATATACCAAC 54544 32 100.0 35 ................................ GTACCACTACTTCTAACGGCTTTTACCATCATAGC 54611 32 100.0 35 ................................ AATGTTATGTGCCAACAAAAATCGATGTATCAAAT 54678 32 100.0 35 ................................ TTCGGTATATTCATTCTCATTTTGTTTTTTTGGTT 54745 32 100.0 35 ................................ CCTGCGTCCGGCGACAATTTAGGCGCAGGAGTAGA 54812 32 100.0 35 ................................ TACGATTGTTTTACCGCGAGGATAAGCGTACAAAG 54879 32 100.0 35 ................................ TGCTCAAGAGATGGGGAACCATCTCACCCTGCAAT 54946 32 100.0 35 ................................ AATGATGAATTAGTTAATGAGATCAAAGAAGAAAC 55013 32 100.0 33 ................................ AAATTCGACTGCTAAGTTATAACTGTCGGTATA 55078 32 100.0 35 ................................ CAGAAAAGTTAAAACAGAATATATCTTAGAACGTT 55145 32 100.0 35 ................................ AAGAATTTTACTAGCATAATGAAGAGGGGATAATC 55212 32 100.0 37 ................................ ATGTCTAATCCTCATAATTTGGAATGGGTATGAAATG 55281 32 100.0 35 ................................ AAAACAATAGAATAATTCATTTTATTGTTCCTCAA 55348 32 100.0 35 ................................ ATCTCGCCTTGGAATTTGGTGCACACTAACTTCTA 55415 32 100.0 35 ................................ TGCCAAAAACGCTACTAGACGGCCTGCCGGCGGTT 55482 32 100.0 35 ................................ TTAAATCCACTATCACTAAAACAGATTAATTATTA 55549 32 100.0 34 ................................ CAAACCTCATTGGTATTTCAAGCAGCGGTTTCTT 55615 32 100.0 35 ................................ GACCTTGACTTGCTTGGTTTTGACGAAAACGAAAT 55682 32 100.0 35 ................................ AGGAATAGCAATTGTGTCAAATAGAAAAGTAGACG 55749 32 90.6 0 ...................T.C........T. | ========== ====== ====== ====== ================================ ===================================== ================== 34 32 99.7 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AATTTTATACTCCTTATTTAGTGAAGTAATTATGTTTGTAGTAATAACTTATGATGTTAATGTAACAACTTCTGGTGGGCAGAAACGTTTACGGAATATTGCAAAAACATGTCTTGATTATGGTTTTAGAGTGCAAAACTCTGTATTTGAATGCGAAGTTGAACCTGATCGGTTCGTTGCGTTAAAAAATACACTTTTAGAGTTATTTGATCCTGATGCTGATAGCTTACGATTTTATTTTTTAGGCAAAAAAGGGAAGGATAAAATCGAACATTTTGGAGCTAATAAGGTCATCGACCCCTTGAGAGATCCACTGATACTGTAATTCGCTAACTTGAAGTTCTCATATTTTTACCGGTCAATTATCGGATTATAACCACTTGATATTTATATTTTTTTTTATGTGTGCTTATCAAGCTAATCAATAAATATAATTTTTTATTATTATTAGCGATATTTAGCATTTTTTTCGATATATTTCAATATGCTATAATCATACT # Right flank : CACGGGTAGCATGAGTTTTTTAAGTGAACAAAAGCGTCGCGTTTAGCAAAGATAGTATGAATAAATTTTAATTAAAATGAACTTGATGTGAATTGTTACAAACATTTCATATCGATTTTAGGTATATTTAGCCAGAAGCTCTTTGTCTTTATCTTTGACTTTGATATCTTAAAGAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCTAAGACTATCCTGAGATTTTCCTGGCATTTTATAAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTCATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGGATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGTGTGATTCTGGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //