Array 1 142648-141239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWGT010000011.1 Cronobacter turicensis strain Cr170 NODE_11_length_162757_cov_59.984749, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 142647 29 93.1 32 ............TG............... ACAGCCGCGCGGGTAATACCCAGCCGTTTTAG 142586 29 93.1 32 ............TG............... TGATTAATCTACTACATAAAGTAGTATTGTCA 142525 29 93.1 32 ............TG............... CGCGGCCTGATTACAAAAACCAACAAATAACG 142464 29 93.1 32 ............TG............... CATCACGCAGCCAACGCCATGATCTGCATTCT 142403 29 93.1 32 ............TG............... GCGGTGCTGTATGAGCAAGTTCCGCAAGGGCG 142342 29 93.1 32 ............TG............... AGGTCGGGGAGGTTATCGCTGGTCATGGCCGC 142281 29 100.0 32 ............................. CAACTCGAATTCTCTGACGGCCAGGCAGTAAC 142220 29 100.0 32 ............................. TGGGTAGGGTGGTTAACCGGCTTCTTGTATGC 142159 29 100.0 32 ............................. GCGATGAATCCCTTGCCGCCTGGATAAAGCGC 142098 29 96.6 32 .............G............... ATAAGTTGCCGGGTTGGCTGGATTACTGGAGA 142037 29 96.6 32 .............G............... TAGGCAGTGTTCGCGGGCATATAGCGGTTATA 141976 29 96.6 32 .............G............... AGCTAGAAAACTCTTCGCCCTCAAATAAATCT 141915 29 100.0 32 ............................. CGTACGAAGTTGTGGGATGAGTTCGGTTATCC 141854 29 100.0 32 ............................. CAGATCTGAGGGGCTTTTGAACCCACACAAAA 141793 29 96.6 32 ................T............ CGGGGGCAATTATTCGGTAGTGCGCGCGTATA 141732 29 100.0 32 ............................. GTGTTGCCTACGGCGGGTATTGATACCACAAC 141671 29 100.0 32 ............................. ATCAGAGCAATTACTCTGGCTGGGTTGTAGTC 141610 28 96.6 5 .....-....................... ATGCC Deletion [141578] 141577 29 79.3 32 .CA.G.ATG.................... ACTCTGGCTGGTCGGCGGATATCGATTACCTG TAAAAG [141560] 141510 29 100.0 32 ............................. CCACTGCGTGATCTGCTGCTTCTTTACGCCCA 141449 29 96.6 32 .............G............... ACGTTTGCTGCGCTTGGCGTGTTGCGGGAAAT 141388 29 100.0 32 ............................. TCGACCATGTTTTCCTGCCCGTTATATTTTTC 141327 28 96.6 32 .....................-....... CGCTCGGCCTGTCTGATCTGTTTACCGTCAAA 141267 29 86.2 0 ..T.....G....G..............T | ========== ====== ====== ====== ============================= ================================ ================== 24 29 95.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCGTGCTGACCGCAGGTGAAATCGAACCGCCGCAGCCTGCGGCAGACATGCTGCCGCCAGCGATTCCACAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTGGTCGTGACGGAAAGCGTCCCGCCCAGGCTTCGCGGGCGGCTTGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGGGATGTGTCGCGCCGGGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAAGAGGGCAATGTAGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGGCTTGTTTCGTTTTTACCCTTGGAAAATCAGTAGGTTAAAGGTTCTTTAATAATATGAGATTGTAAACCAAATGTTGGTAGGATGTTGGCTGCCAAAAAAGTTTAATAAATACAGAGATGTAGCTTTAGA # Right flank : CATCCGTTTAGGCTTCTTTCTGCACCACCAGCGGTTCCCTGCTGCGGCGGATGCGCTTCGCTTACCCATCCTACAGGCGCAGATCTTCATGCCCGGTGGGTGCGCTTCGCTTACCCACTCTACGGGCGCGCATTCTCATGCACCCGTTTTACAAAACCTTCACTACGCCTGCTCCGATTGAGCAATAAACCGGCATCCGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCAGGGTAAGTACTTGATAGCTATACGCTAAAGTACTGAAATCTCTCCCCCATAGCCTTAGTGGTACAAAAACTGTGTATCACCCGTAGGCTGCACTATGTCTCTTATGCTCTC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7075-6497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWGT010000007.1 Cronobacter turicensis strain Cr170 NODE_7_length_206565_cov_60.730023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7074 29 100.0 32 ............................. GTAAAACGTGTATGCAATATCACTTTTCACCC 7013 29 100.0 32 ............................. GAGACCTTAATTGGAGCGCAGCTTGCTAACCG 6952 29 100.0 33 ............................. GAAAAATATATCCATTGTCTTATTGGGATAAGC 6890 29 100.0 32 ............................. GTATCTGATGGGTGGATTAAACATGCGTGGTC 6829 29 100.0 32 ............................. CCCTCGCACGCAACGATTTTGCAAACAACCTG 6768 29 100.0 32 ............................. CCGCATGGTCTAAGTTCAACGAACCTACGTCA 6707 29 100.0 32 ............................. GGATGTGGCGGCCACTCATGCGGCAGCATGAT 6646 29 100.0 32 ............................. GGATGGGGCCAAATGGTCTTAAAAGAAGTGGT 6585 29 93.1 30 ...........T.A............... TATGACATGCGGGCTCTTAATGATGCAAAT 6526 29 89.7 0 .......T...............C....T | C [6523] ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGTTAACATCAATATCAACTATCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACCGTCACAAGTCAGGTGAAACAGCTTAACGGTAAAAGCGGGATACTAAGCCAGGTCATCACGCTGGAGCCCGAAGGCGAGGTAGTCGCCGATGCGCTCATCACCTTTGTGTGCATCGATCTGAAAACCCAGAAAGCGCTGCCGATTGACGGCGAGCTGCGTGAAAAACTGGAAAAACTCACAGGGTAAATTCTGCAATAGCGGTGCGTGTGCCCGCCATCGTGGATTTATCGCCGCTGAAGATAAACAATCCAGTAGATGTTAACGGCCCACAAGCGTTGCTGAAAAACGCCTTCAAAATCAATAGGGCAGCCGTTCTTTTACAAGATGGATTGTTGTAAAAATGTTGGTAGGATGTGGATGTCGAAAAAATCCTAAGCAGTACAAACGGTTACCGTTAGT # Right flank : TATAAATACGACCTGGAAAAATAATAACCGCGTAGCATGTTCATTTAACAAACGGACAATAAAAAGCCCGCTATCGCGGGCCTTCACTTTTAATAGTATCCACCGCCGCCCGGACGGGAGTCAGATGATCTCCCACCACAACGCGTGCCGTCAGCAGCCCTGTCGTCGTCGTGATTGCAGGCAGCGTATGATTGCGTAGCAGAGCCGAAAGAAAGCAAGACGAAGAGAAACGCGAATACCTTTTTCATTTTTTATTCCATAAAGTGCCATCACATAATGGCCGTCTCATTGTATGAGGCGGATTATTAAATTCGATGGGGAAGGTCACAATGCAGACGGAGATAAAAAAATAAGATTTCGCCATGTTCTGGAATGCACCTCCCACAAATAATCTTAAGCCTGGCTATTACTCCAGCCCCATCTCCTGTCACATTCTTCAGCACCGTTTATACTTCAAAGCCATTGTTCAATTTTCAAGACTGCGCAACAAAGGAGAGGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //