Array 1 121959-121011 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810182.1 Neisseria sp. HMSC067G12 Scaffold19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 121958 33 97.0 32 A................................ GGGTCGGCTCTACTTGCCAGCGTTGAGATAAA 121893 33 97.0 32 G................................ ACATTTACCGCCTAGATAGGCGGTTTTCTTTT 121828 33 93.9 32 GT............................... AAGACATAAGGCCATGCGGTCGGAGGTGTCTT 121763 33 97.0 32 .G............................... CCGCCAAGGGTACTCACGTTATGAGTACCCTT 121698 33 97.0 31 .T............................... AGCCGTCGCCTCTTGGTTTTTGATGTAACCA 121634 33 93.9 32 AT............................... TTGCGTCCTGCGTTCTTTTTGAGAATTAGCGC 121569 33 93.9 31 GT............................... GCTAAATCGGGCTTAAAGTAGCCGTCTGCCT 121505 33 97.0 32 .G............................... GTCCATTCCCCAATCGGGGCGGCTTGTTTCGT 121440 33 93.9 32 AA............................... GTGATTCTCGCTTCCCAATTTCAGACGGCCTG 121375 33 100.0 32 ................................. ATTGCCGTCTGCTTTGCTTTGCACTGTCGTGA 121310 33 100.0 32 ................................. CCTTTGAAACAAATTAATTTCGAATTAAAACA 121245 33 97.0 33 A................................ CAATCGCCACGCAACATCATGACATTGCCCACG 121179 33 100.0 37 ................................. GCAGTGTTTTGGCCGTGTCAGCAATCACTATCGCGGC 121109 33 100.0 33 ................................. CAGCAAAACCCTCTACTCGCTGCCTTTACCGGC 121043 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= ===================================== ================== 15 33 97.0 32 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAAACGCCAAACTATCACAATAAGCGAACGTGGTTCAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGCGATTGCCGAAGAATACTTTGCGACCAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCCCGTCAAATTGCGGATGGCTATTGATAATTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCATTGACATCAATCCTTTCGATTGTGTGATTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCATTTTGTTGGCAGGTATTCTCCAAATTCCTGACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATATCAATTTCCGCTTCAAACGGTAAAGGGATACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCTGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTTGGTCAATGTTGGGAAAATGGCGGTGGAGTTTGCTCGGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTAAGGGAAATATTCGGAAGCCTTTAACCGCCAATTACATGGCAGCCCTTTAGTCGATCAAGCTATCGCCGGAGCC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 124059-123438 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810182.1 Neisseria sp. HMSC067G12 Scaffold19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 124058 33 97.0 32 C................................ AAAGTCGCCCTGACCAACGAAGCAGGCGAGCC 123993 33 97.0 33 G................................ ATGAACCCTGTCGAATTGGCGGCCAATACGTTC 123927 33 93.9 35 AG............................... TGCCTGTACGTTTTCAAAAGTGGCTTTTCGGTACT 123859 33 93.9 33 GG............................... GCCGTTATCGTCGCCAGCGGTGGCAGAATCGCC 123793 33 100.0 32 ................................. AGCCATGCCCGAATCTGCCTAAACTTGAGGGC 123728 33 93.9 32 GG............................... TCGCCGGTGGGCTGGGCATTTTTCGGGATAGG 123663 33 100.0 31 ................................. CAGCGTATGGCCGTCAAAAGCTCGCAAAATG 123599 33 100.0 31 ................................. TCATTTTCATTTGGAATTTGGGCTTCTTATC 123535 33 93.9 32 GA............................... AGAACGTGATTGTTGATATTCAGCCTGTGCTG 123470 33 93.9 0 AA............................... | ========== ====== ====== ====== ================================= =================================== ================== 10 33 96.3 32 TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGATGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCAAAATTGTGTTTGGACTACGGCGTGCGCGTACAGTATTCGGTGTTCGAATGCGACATCGCGCCCGATCAATGGGTTGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGTCTGCGCTTTTACCATCTGGGCAGTAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAATAATCAGGATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAACAAGGCTTTTAAGAGAGG # Right flank : ATGGTCTTTCTTCTGTTCTTTCGGGGCTTCCGCTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGGGGTGTTTGTACTGCCGATGACTGCCTCGGGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGGAAGAGAAAGAAAGGATTCGATATGTGCAAGTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCATTGGTTTGCCAGTTCGTCGATTTTGCTTACTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTGGGGATATTTATCATATTGATGGTGCAGAATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGAGAAACGTCATCCACCTGTTCTCTAATGCAGGC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //