Array 1 1-391 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURR01000012.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002058 CFSAN002058_111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 96.6 32 -............................ CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 61 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 122 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 183 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 244 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 305 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 366 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1108 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURR01000068.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002058 CFSAN002058_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 96.6 32 -............................ TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 61 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 122 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 183 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 244 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 305 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 366 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 427 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 488 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 549 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 610 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [652] 652 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 713 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 774 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 835 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 896 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 957 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1018 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1079 29 96.6 0 A............................ | A [1105] ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 190186-191311 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURR01000104.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002058 CFSAN002058_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190186 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 190247 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 190308 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 190369 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 190430 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 190491 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 190552 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 190613 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 190674 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 190735 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 190796 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 190857 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 190918 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 190979 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 191040 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 191101 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 191162 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 191223 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 191284 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //