Array 1 132553-132775 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JABXLA010000003.1 Listeria innocua strain 2012L-5520 NODE_3_length_488869_cov_22.9164_ID_5, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=============================	====================================	==================
    132553	    29	  96.6	    36	.G...........................	AACACAAGATACCTTAGTGAGTTTAAACAAGCAGAA	
    132618	    29	  96.6	    36	.........G...................	ATTAAAACGCCTCTGCCGGGTCTGTTTCTGGAACTT	
    132683	    29	 100.0	    35	.............................	AGATACATCCAGCGGTAATAATCGAGGTCATTCTT 	
    132747	    29	  96.6	     0	.A...........................	|                                   	
==========	======	======	======	=============================	====================================	==================
         4	    29	  97.4	    36	GTTTTAGTTACTTAATGTGAAATGTAAAT	                                    	       

# Left flank :   ACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTTATTACATCGGATTCCATCGACCTTCCTGAAGAAAAACAATTCGAAAAACTAACCACGATCTCCATTGGACGAATCTTAGGCCGAGCAATCGAAGGCGTACAAGAAAACCGTTCATTGCATCCGTTGTTTTAAGATATAAGCAGAAGACAGCTACTAGTAGAGTTGCTGTTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAACGTAAAAAACACCGAAGACCGACAGAAAGTTGTGAATGCTTGGAGGAAGTGGAGTTTAGAGATATTTGCTTTAAAAATGTATGCTGGTAAAAGTAGATTTTATCTGATTTGGAACAGGTCGACAGGAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCAC
# Right flank :  TGTAGGAAGCGGCTTTAAAGAAATTATTAAATAATCTGGAGGACATTTTCATGAAAAAAGTTCTAATGCCACTTGTGCTTCTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGGAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCTAACAGTGATTCTATTGTTAAAGTGAAATTTTTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTGAAAAACTATAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCCGAACCATGGTATTTAAGTGATGATAAATATGTCGCAGTTGAAAACTATATTGCGCTTGAAAAAAATAAAGAATATACCTTGTTTCTAAACGAGAGCGACGATAAAATAAGTTCTATAGTTAGCATGGGTTACGGTAAATTCAGTGAAAAGCTCCAAGGA

# Questionable array : NO	 Score: 5.42
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTAATGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:81.48%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.68   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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