Array 1 786890-786619 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031393.1 Treponema medium strain ATCC 700293 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================================================== ================== 786889 24 100.0 75 ........................ AATTCTGCAACATCATGAGCGACCTGCACATATTCGCCGCTATTAAACTCGAAAACCATTGTCATCTGAATACCT 786790 24 100.0 51 ........................ TCATAATAATCCTCCTATAGATTATCCGTGTAAGTTATTACTCTAAAAATC 786715 24 100.0 49 ........................ AGCATTTCGACAAGCTGAGAAGGCGTGTAGTAATCCCACTCTAAAAATC 786642 24 83.3 0 ...................CTCT. | ========== ====== ====== ====== ======================== =========================================================================== ================== 4 24 95.8 59 AGACCTGCTTTAAGGGATTAAGAC # Left flank : TCAGACCTGCTGCGTGAAACCAGTGGCGTCCGTGCCGCTACCGAAACGGAGTTGCGCAAAAAACATCACTGCTCAGCTTTTTATTCAGAACTAAGTTTTGGAACCAAGGCGGGTTCTTAGGGCAGAGCCATAAGTCGCCGTTTTTCTTTTGGGGGTTATAGGGGGACTTTTCTTTTTATCGAAAAAAAAGAAAAGCCTCCCTAACTTTCTTAGACCTGTTTTAAGGGATTCTGTCAAAGAATGTACGTCCTGTACATTCTTTGACGGTGAGTTTTGAGCAAGGCTCAAAACATCACTTCTGCGTGGAACCACGCTCGTCCTTGGGCGTTCTGAAACGGAGTTACGCAAAAAGCATCACGGCTCAACTTTTTATTCAGAACCAAGTTATGGAACCAAGACGGGTTCTTAGGGCAACGCCCTAAGTCGCCGTTTTTCTTTTGGGGGTTATAGGGGGACTTTTCTTTTTATCGAAAAAAAAGAAAAGCCTCCCTAACCTTCTT # Right flank : AAGAGTGTACCTCCTTGTACACTCTTGAGGGCGAGTTTTTGCTCAATACCGCCATGGATGGCGGGCATATCAAACAGAAACGATGTTTTACAAAAATTCCATTTTTGTGAAACTTGCAAGGTAATGAGCAACACGGACGTTGCACATTACCGTAACCTCGCTACTGCGTGGAACCACGCCCGTCCTTGGGCGTTCTGAAGCAGAATTATGCTCACACGCTATGGGCGTTGAAGTAAATATATGGAGGAATTTATGTCTGAAAAATTTGATGAAAAGAAAAAAGTTAAAGCAAGTGAAAAATTTGAAGGCTTCAAATCATATCAATATACAGATAATGATTTTGAAAAAGTATTTAAAAATGAAGAAAAGATTAAAGAAAAAGTAAAAAAAGGAAATTTTGGAGAATATGCTGATTATATACCACTTTTCTTTGAAATGTTGAAAGATGTTTTTTCTGGAAAATATAAAGAAGTTCCTGTAGGTGCTATTGCTGCAATAAT # Questionable array : NO Score: 4.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.55, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGACCTGCTTTAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 787684-787364 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031393.1 Treponema medium strain ATCC 700293 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 787683 28 96.4 47 ....T....................... GAACTTATCAAACTCATCGTTGTAAACTGTATCATCATGGGACTAAA 787608 28 96.4 43 ....T....................... GAACCGTCTACGACTTGGATTGACTTGGAGCTTATTCTCTAAG 787537 28 100.0 45 ............................ TGTTAAGCCCTTTCCGACGATATTTGGAAGAAGATTTTCTCTAAA 787464 28 92.9 45 ...........AC............... CTTGCAAGCCTCCAGCTCTTAAAGCGCTTTTTTGCTTCCTCTAAA 787391 28 57.1 0 .............GCGT.AA.CC.GTGG | ========== ====== ====== ====== ============================ =============================================== ================== 5 28 88.6 45 AATCAGACCTGCTTTAAGGGATTAAGAC # Left flank : ACTCCCACAAACACGAGCATCAGTATATTGACGAGATAGTGTTTCTTGCATCTTTCGATTCTTTCGTCTTTAATGTTCTCAAATGATTCTTGTAATGTCATTGTTCCACCCCAAGAATATTTTACCATCTTTTGTACCGTGTGAGCTACTGTTTTTTTGACACTATTTATAATGCGGAATCCCTGTACCACATACCAGCCATATTTACCCTAGTTTTTTTCTATTTTTTCTGCTTGCCCTTTCTAAAGGAGGTGTGATAGAATAAAAGCATAGGTTTTAACTGCTTTTTGACAAAATCGCAAACCTCCAAAAAGTGTCCAAAACCCGCTTTTTAGGGGTAGGTTTGCGAAAATATATAAGTCTTTATTATTACAATGATTACAGGATTCATTATATCTATTTTTTCTATTTTTTTAGAGATCGCCCCCGTTTTACCAGAGGTTTTCGAAAACATCTTTCTAAGTCGATACCTCACCGAGCCTTACCCCACGCGCTCTAAA # Right flank : CGTCCGTGCCGCTACCGAAACGGAGTTGCGCAAAAAACATCACTGCTCAGCTTTTTATTCAGAACTAAGTTTTGGAACCAAGGCGGGTTCTTAGGGCAGAGCCATAAGTCGCCGTTTTTCTTTTGGGGGTTATAGGGGGACTTTTCTTTTTATCGAAAAAAAAGAAAAGCCTCCCTAACTTTCTTAGACCTGTTTTAAGGGATTCTGTCAAAGAATGTACGTCCTGTACATTCTTTGACGGTGAGTTTTGAGCAAGGCTCAAAACATCACTTCTGCGTGGAACCACGCTCGTCCTTGGGCGTTCTGAAACGGAGTTACGCAAAAAGCATCACGGCTCAACTTTTTATTCAGAACCAAGTTATGGAACCAAGACGGGTTCTTAGGGCAACGCCCTAAGTCGCCGTTTTTCTTTTGGGGGTTATAGGGGGACTTTTCTTTTTATCGAAAAAAAAGAAAAGCCTCCCTAACCTTCTTAGACCTGCTTTAAGGGATTAAGACAA # Questionable array : NO Score: 3.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.43, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCAGACCTGCTTTAAGGGATTAAGAC # Alternate repeat : AATCTGACCTGCTTTAAGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 865089-865710 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031393.1 Treponema medium strain ATCC 700293 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 865089 35 100.0 36 ................................... TAATATAACCCCCTATAGTGTTTGTCTTATAGCTAT 865160 35 100.0 39 ................................... TAGATATTGCTGCCAGAAGCTTTTTATAGATTCGCCTCA 865234 35 100.0 37 ................................... CATACGAAAATAAGGTTTGTTACATTTTGTCCTACTA 865306 35 100.0 38 ................................... AAATTTTATATTTCCTAATGTTCCTTTTGTTGAATAAA 865379 35 100.0 39 ................................... TTTTCGTCGCCGTTCAGCTTCTTGATGTGCTTTTTTTGC 865453 35 100.0 41 ................................... AGGAATAACGCAGACGTCAACATCGTCATTGTTTAGAAAGG 865529 35 100.0 39 ................................... CGATAAGATAGTTGCGAACTCCTCTTGAAAGATATCCTA 865603 35 100.0 38 ................................... AAAATTCGAAGACGGTTTTACCTTTCAACATTTTATCG 865676 35 88.6 0 ..............................CTCT. | ========== ====== ====== ====== =================================== ========================================= ================== 9 35 98.7 38 CTCTAAAAATCAGACCTGCTTTAAGGGATTAAGAC # Left flank : TTCCTACATTGGACAAAATATACACATCTGACATATATCTTTAGTATAGCACAGGCTATTGCTGCTGTCATTGAGTATTTTATTTGCATAGAGGCGACATTCCTTACGCTATTCCGCACCATAGTATAGCAATGAGCAAACATCTATATGGATACTTTGTGTGTATGTGTATTAACCTCCTCTATTTTCACACGGCTGGCGAAAAAACTCTTTAAACAATAATTTCTGTTTTTTCTGCTTGCCCTTTCTAAAGGAGGTGTGATAGAATAAAGACATAGGTTTTAACTGCTTTTTGACAAAATCGCAAACCTCTAAAAAGTGCCCAAAACCCGCTTTTTAGGGGTAGGTTTGCGAAAATATATAAGTCTTTATTATCACAATGATTACAGGATTCATTATGTCTATTTTTTCTATTTTTTTAGGGATCGCCCTCGTTTTACCAGAGGTTTTCGAAAACATCTTTTTAAGTCAATACCTCACCAATCCTTACCCCGCGCGCT # Right flank : CAAGAGTGTACCTCCTTGTACACTCTTGAGGGCGAGTTTTTGCCAACGCAAAAACTCGCTGCTGCGTCGAACCACGCCCATCCGTGGGCGTTCTGAAACGGAGTTGCGCAAAAAGAATCACGGCTCAGCTTTTTTTAGAACAAACGACTGGAACCAAGGCGGGTTCCGCGTGGAACCAGCGGTGTCCGTGCCGCTACTGAAACGGAGCTGCGGAGAGGGAAAAGTTGGTAAGAAAAACTGGAAGGTTTGTCTTACATACAACAACATTCTGCTTTGAGGGGTAATTGTAAAGAGGGTATACAGGATATGCCCCCTCTTTACCCGTCATTTTTCTTTTTGGGGTTATAGGGGGCTTTTTCTTTTTATCGGAAAAAAAGAAAAAATCCCCTAACCTTCTTAGACCTGCTTTAAGGGATTAAGACAGCTCAAGGATGTACGTCCTTGTACATCCTTGAGCACGAGTTTTTGCGGGAGCAAAAACTCGCTGCTGCGTCGAACCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTAAAAATCAGACCTGCTTTAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //