Array 1 14243-14872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRBT010000027.1 Levilactobacillus brevis strain BIO5542 Lactobacillus_brevis_BIO5542_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14243 36 100.0 30 .................................... ATTTATTCTCTACTTCAGATAGAAGATTAC 14309 36 100.0 30 .................................... TGCAGGAACATTGAATGAAGAAGGGTTACT 14375 36 100.0 30 .................................... TGCTGCTTAGCTATCTGGAATCATTGGTGC 14441 36 100.0 30 .................................... CCGACCCATTCGCATGTTCCACATTAATCA 14507 36 100.0 30 .................................... TTCTTCTAGTCCCTGTGGTAAGTCCATTTT 14573 36 100.0 30 .................................... TTCTAAAGCTAAAACAAATATTGCAGACTT 14639 36 100.0 30 .................................... GAGCAACACAAACATGGAATTAGTCGACTA 14705 36 100.0 30 .................................... TATTAACCGAGCTGTTGGCTACGGCATAGA 14771 36 100.0 30 .................................... CCGTTCAGAGCTTACCAAGGCGGCCAGCCA 14837 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Left flank : AAACGTGGATTTAAATGCGTTATTTCAACGAAAACTGCAAACGAGGTTGTTGAAAGTCTTAGCTGATGATCAAACGGTGGGCTTAGTGGATGGGCTGCAATCATTGCTATCTCAACTATTAGCGGATAGTTACTTGATGGATGTTCCATTGGAGTTGCCAGAGACACCAGAACTAGCAAAGCTGATAAAATTTAGTGGTATTCAACTAGTACCTGATTTAAGAGATGACGTATATGGTATACTAGAGACACTAGTTAAGGCGTTGATAGAACTGAATGATCACCGAATGGTGGTTTTGACCAATGTCGGCCATTATCTTCAGGTCAGCCAACTTCAATCGTTGGTAAGATTTATGGCAAATATTGATTTACCAATTCTTCTAATTGAATTTTCATCCACCAAGCAATCAGACTATTTCAGAAATTGTGACTATCACTACATCGACAGCGATTTTGTGTTGTGGTAAATTCTCAAGGTGAGATAATGGTGTGAAAATGTCG # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 25724-25874 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRBT010000016.1 Levilactobacillus brevis strain BIO5542 Lactobacillus_brevis_BIO5542_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25724 29 100.0 32 ............................. ATTGTGCGTCTTTAATAGATTTAAACTTTCCG 25785 29 100.0 32 ............................. TGACGTAGCCCAACGACTGCTTGATTTTAAGC 25846 29 79.3 0 ....A.................CAT.T.C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : GGCACAAAAAGAATTGGCGGAGCGCTTAAATTTGACGGCGCAGTCAACCGCGGAATTCGTTCGGAAATTGGAAAAAAAGGGATTCGTGACACGAATGAAATCTCCTACGGACCAGCGAGTTACCGTGGTGAGTATCACGGATGCTGGGCGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTCTTAACGATTTTAGATGATACGGAGTTGGATCAACTCGCGCATATTTTAGATAAGGTTAATCAGCATATGTATGAAGAAGTTAATGCCGCTAACCCAACCTGGTTCAACAAGTTCCATCAGGTCATTATGAATCGTATGTTATCGCAATTACATTCAGGCGAAGATCGGTAGGCTTGGTGTCAGTTTCGGCGATATTTATGGGGGCTGGTTTATTTGTTAGACAACCATGACGACCTGCACTCAGAAGCAAAGTGATGAGAATCGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGTTTTCTTTAGT # Right flank : CGCTACTTCCATAAACTACTAGTATTAGCGGAAGTAGCGCTGTCACAAGCAAAGAACCACCACAACTTGCAAGGTAATCAGGCTCAAAAGCCACCGCACAATTATCAGCCATTTGGCCTAACAATTGTGCGGTGGTTTGTAGTGTCGAGATTATTTTTAATTAAGCGGCATTTAAAATCCACAAGAACAAGACGAAGACAACCGCCAGCCCGTACATCATAGCACCGACTTCCTTACCACGCTTAGCAGCCAACATGGTCAAAGGATAGGTGATGAAACCTAGTGCGATCCCATCGGAGATGCTGTAGGTTAAAGGCATTCCCAGCACAATCAGAAAGGCCGGAGCAGCTACTTCGAATTTTTCCCAATGAATGTTCTTTAGGGATTGGGCCATTAGCACCCCAACGATAATCAAAGCGGGGGCGGTGACTTGATCCGTCACAACTGCCAACAATGGAGAGAAGAACGCGCCAAAGATGAAGAGTATCCCAGTGACGATG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52-1076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRBT010000018.1 Levilactobacillus brevis strain BIO5542 Lactobacillus_brevis_BIO5542_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 52 36 100.0 29 .................................... GCCAGCTGTATTAACTCATCCGGCATAGA 117 36 100.0 30 .................................... CCGTTCAGAGCTTACCAAGGCGGCCAGCCA 183 36 100.0 30 .................................... ATTTTATTTAACCAAGAAACTGACCAAGTA 249 36 100.0 30 .................................... GCCAGCTGTATTAACTCATCCGGCGTGGCT 315 36 100.0 30 .................................... AAGTTCCAAAGATTTAAGCAGTCAGTTTAA 381 36 100.0 30 .................................... CAACCCAGTTGATTGGGTGGCCGTCAAGTT 447 36 100.0 30 .................................... ATGAGCTGGAAGAATATAAGCCACTCGAGA 513 36 100.0 30 .................................... AATTGTTTTCCAATCTTGATATGCCCATGT 579 36 100.0 30 .................................... TGGCTGCCTCCATAGATAACGATCGCTGAA 645 36 100.0 30 .................................... TCCCAAAGGTAAATCATTAAATGATCCCGA 711 36 100.0 30 .................................... GAATCAAGTAAATGGGAACGCTGTTCCTGT 777 36 100.0 30 .................................... TCATTGAGGCGTTAATGTATAAACCGCCTT 843 36 100.0 30 .................................... GCCAAGAAATCAACGACTACATCGAATTTA 909 36 100.0 30 .................................... ACAATTACCAACAAATGCAACTCCAAGCAT 975 36 100.0 30 .................................... TTAATGTAAGGCGAACCATCCACGAAGGCA 1041 36 91.7 0 ...........................A.C.....T | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.5 30 GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Left flank : TAAATCAATAGGGTTAAGAACATTTTATTTAACCAAGAAACTGACCAAGTAG # Right flank : TACCCACTAGCAATGCTGCTAGGTGCTATGGTGTCTTACGATTTTGATAAAATGGCTCATTGATAAGAGCGAGATAACTTCTTTGAAGATATTAAATGACCTTGTAAAAAATGGTCTATAGATCTGTCAATTAGCACCAGTGGGCGTAAACATGAGAGTTCAATTCAACTTGCGAATTGAACTCTTTTTGTTAGCAAACGAATTATCACTAGCTTTGACAGCGAGGTACTTCAGTTAACCTAAACAATAACGGCAGTTTAACCACCAGACTATAAAAAATTGGTAACTTAACAAGACGCGGCATAACTTGAGCGCCCGCAACCGCCACTGCTGATAATGCTCGCCTTTTATCTGATCTCACGTATCCTTAAATCTGTATCATCTCAATCCAATCAACCAGCGTTTAGCAGTCCAAGTGAGTTAGCTGGGCCAACAAAGTGAGGGGCCTCACTCATGTTTAGGCCACCATACCGCGTATGATAGAGACGATAGCTAGAAGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //