Array 1 458410-458116 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBR01000001.1 Listeria sp. ILCC804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 458409 30 100.0 36 .............................. CGCCTGAGCGATTGGCCGTCGTTTCGATGCACCTGT 458343 30 100.0 35 .............................. TCGTAAATATAGCTTAAATAGCGCTCCGCACTGTA 458278 30 100.0 35 .............................. GTGGCTGGGCTAAAGATAAATAGATTGCCCATGTG 458213 30 96.7 38 ..C........................... GTTGTTAGACCTGAATAGGCTACATCATCTTGAATGGA 458145 30 80.0 0 ..............CC.A....C....TG. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 95.3 36 GTTTTAATCTATGTATTGTGAAATGTAAAT # Left flank : TCAAGCGAAGCGGCGCCGATGTTTTCGTGACAGGAGATATTTATTATCATACAGGGCACGACTTACTTGCGATTGATTTACCTACGATTGATGCGGGGCATAATATTGAAAAAGTGATGAAACGTTATTTAAAAACGGAATTTGAAAAAAGGGCGGAAAATCTAAAGTATGAGGCTGATTTTATCATTTCAGAAGTCGATACTGATCCGTTCACGTTCTTATGAAAACGAAATTAATTTTTTAAAGCGGCAACTCAGGCAGTGGGAAAGCAACGCTCTTTCAATGTCATTAGAGTAAATTTTTAATTCAATCTGTCGATGTCTAGTAATGTGAAAATGCTGGGACATCGACAGAAATCCGGAATTCATTGCGGGAGAAGGGAAGATGGCGGAAAGAGAGACAATGACTTTCTTTTTCTACTCCATTTTTCTCCAAAAATCCGGGGGTCGACAGAAAATCACTTTTGAGCTATGATGGGAGTAAGAGTCACGAGGGTACCT # Right flank : TTAGCCAAATAAAAAGTTAAAGCACAATTAGAGCATATATTAAAACAAAACAAAAAGCATAAATCCAGTAGTGATTCCATTTCAGAAATGGTTTTTACTGGGTTTATGCTTATTTTTTATCGACCGCCGTTTTTTAAATGTTCTAATCGGGCGCGGCGTTTTTCTTCCATGTTTTTCTTTTTGGCACGCGGTAGAATGGCTTCGGCGCTTATTTGGTGGTGGCGTTCCCAAGTTGTGGGGTCATCTGGTTCGTACTGGTCTAAAAAGACGAGCACTTCTCGGATAATATGTGTTGGCGTGCTAGCACCAGCAGTTATCGCCACTTTTTTAGCATCTTTAAGCCAATCTAAATTAATTTCGCTCACATCGGCCACTCGATATGCGGGGACTAAAGCTTTTTCAATCGAAACTTGGGCGAGACGATTCGTGTTATTGCTCCGCGGGTCGCCTACAACAATTGTGACGTCAGCGCCGACAGCTTGTTCTGCAACGGCTTCTTG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 28794-29215 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBR01000003.1 Listeria sp. ILCC804, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 28794 30 100.0 37 .............................. TAAATCTTTTTAATATTTTATAACTTGCCATGTTTCA 28861 30 100.0 35 .............................. TGATTTGTTTGTCGGCATAAGCTTGTCCCTGTTGT 28926 30 100.0 36 .............................. GCGCTTCTTCTACAATTTCTTTTAAAGCTTCTATTT 28992 30 100.0 35 .............................. TTTGAAGTGTTTACTTCACATCTAGTATCAACAGC 29057 30 100.0 35 .............................. GCTGTATCTTTGATTTCAAATTGAACTCCAGACAG 29122 30 100.0 34 .............................. CCACATCAGAACGTATCTGGCCCAATTCGGCAGT 29186 30 86.7 0 .............C...G...G...G.... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.1 36 GTTTTAATCTATGTATTATGAAATGTAAAT # Left flank : TTATCAAGGTTTTAAGATGTGGTGGTGATTTTATGTATATTATCTTAATCTATGATATTCCAAATGGCGAGGGCAGTGCGAAAGTTGCGCGTAAGATTTTTAAAACTTGTAAAAAATATTTAACACACATTCAAAAGTCCGTTTTTGAAGGGGAGGTTACACCAGCACTTCTCATGCAACTAAAGCTTGAACTTAATCAACATATTCGAAAAGAGATGGACTCTGTCATTATTTTTAATAGTCGCAATCAAAAGTGGCTAGAAAAAGAGTTTTTAGGTCTTGAAGATAGTAAGACATCTAATTTTTTCTAATCTGTCGATGCTAGATAGCGTAAAAACACCTGGGGGTCGACAAAAACTTGTTATCCGTTCTGGCAGAATGGATAACAAGTTTTTTTGTTTGTGAAACTAAGGAAAACTTGAAAAATAACTCCCGAAAATCAGAGGTCGACAGAAAAGCCTTTTTGAGGTAAGATGGGAGTAGGGCTCGCGAGGGTACCT # Right flank : TACAGGAGGCGTATTTTTAGGGTGTTCCATACATAAAGTTTTAATCCGTGCATAAAAACTACAGTTTCTGCATTTTTGTGGTATTCTAGTCTACATATTATGAAATATGGCTGCAATTTAGCATTGGGAAACTAGTTTTTTTAACTACAAAACTACACATTCTAAAAAAGCAAAAATCATTAGAAGCGCAGTGCATCTGCGGAAATGATTTTTGCTTTTATATGTGTTTGTATAGTGATTGCATATGCAATTTGTTTGCGGGGATAAAATGGGTAAAACCCGCTGTTTTTGTAATAATCCGCACTAGCTTTCTTCAAAATGAACAAAAAAGGGGATTATTTTTGCGCGATTGTTCAAAAAATGTCTACAGAAAATGGCGGTGAAGTCTGGTAAGATATTACTTGTGATGAGGAAAACACTGTATGCCTCATCATAAGTATTCCTTTAATTACAAAACGAGCTGTTCAACCTTTTGACCTAGCCATCTTATCTTGGCTAGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 45761-45206 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBR01000003.1 Listeria sp. ILCC804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 45760 30 100.0 36 .............................. ACTGTGAAACATGAGATAAACGGTGAGTTTAGCTTT 45694 30 100.0 36 .............................. GCTATTTTGTCTTTTGCCGAAAACCAAGAACTTTGG 45628 30 100.0 34 .............................. ATTTTCGAAGCTTGGAAGATATTAAATCGGAGTA 45564 30 100.0 36 .............................. TGCAATCTTTTACTACTTCCTCAATAACGCTTAAAG 45498 30 100.0 35 .............................. AAAGGACTGGTTTCTTGCAAAATCCCATAGACATA 45433 30 100.0 37 .............................. CTGATGAAGCGGGTAATTGGCTTGACTGGTACGCCAG 45366 30 96.7 35 .............C................ CCATCTGTAATCTCTAGGATTTGCTTGTGCGAACT 45301 30 86.7 36 ...........CA....A.........G.. TCTGTTGTGATCTTACTTTCAAACTCATTCGCCGCT 45235 30 70.0 0 ....C...T.......CA.A..T.C...TC | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 94.8 36 GTTTTAATCTATGTATTGTGAAATGTAAAT # Left flank : AAACAACGAACTGTGGTTCCACGTCAAGGATTTGCCTGGTTCGCATGTTGTGATCCAAGACCCGAATCCCGATGAAACAGCCATCGAAGAGGCCGCCATGATTGCCGCTTATTTCTCAAAAGCACGTCTATCAAGCACCGTCCCTGTTGACGCAACGCTCGTCAAGCACGTGAAAAAACCAAACGGCGCCAAACCCGGCTACGTCATTTACGATAATCAAACGACCTATTTCGTAACGCCTGACGAAGAAAAAGTCCAAGCATTAAAAAATAAATGAGCCATTGCCCCGGTATGATGTGTATCGGGGTTTTCTGTCGATGTTCGGTAACGTAAAATTGCTGGGGGAACGACAGAAAGTTGGGAATCATTGGGAGAGTAGGAGAACGAGGAGATAATGGAACAATCAATTCGTTTTTCCATCCCATTTTCCACCCAAAAATCTAGGGTCGACAGAAAACCACTTTTGAGCTATGATGAGAGTAGAGCTCGCGAGGGTACCA # Right flank : CCATTAAAATCCCCCGCCAAAATAAAAACTCTGGTGGGGGATTTTTTATGTTTGGTTTAAACAAACGATCGGAGCTCCTTGTTTTTTGCGAATTTGTAGCTGGCAATGCTGAAAAATAGGAGTGTGTAGCCGAGTAAAATGATGATGTTTAAACTTAAATCGGCAAGTGTTCCGTTTTGTTGGAGTTTTGAGACGGCGTCCATCACCCAGTATTGCGGCATGAAAGCGGCGATTTTTTGCATGATTTCTGGCATGATAGCAATCGGGATTAGTGCGCCAGAAAGTAGCGTTGAAATCGTGAAAATCGTCGTTTGCATCGCTGAAATACTCCTTCTGCTTCCTGCGACAAAGCCGAATGCGAGTGACAGCACGACCGCCATCAGTGAGAACACCGCAAGGATTGCAAATAAATCGACGTATGCAACACCCGGATTAATCCGGAAGGCAAAACGCATTGCAAAGAGACAAATCAGCACCTCAACAAGCACAATCACATAGGC # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 82709-81747 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBR01000003.1 Listeria sp. ILCC804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 82708 36 100.0 30 .................................... CCTTAGCTTCTTTACCTGATGAGGAAACGT 82642 36 100.0 30 .................................... CAGATTCATTTGCTAATATTTTCCATGCAG 82576 36 100.0 30 .................................... TTAGATGTGACTGTTGGCGGTGGTGCCGTA 82510 36 100.0 31 .................................... CCCAAGGCTTTTGAGTTAGAGCGTAAGAACC 82443 36 100.0 30 .................................... AACCAAGTTTATTCGAAACCGAGGCACCTG 82377 36 100.0 30 .................................... ATCAAGGTCTCGCCTCAAAATTCGGCGGTA 82311 36 100.0 30 .................................... CAGCTTCGTTTTGTTTAATTCTTTCATTTT 82245 36 100.0 30 .................................... GAGAGAATTTAGACAGTATACCACAGTAGC 82179 36 100.0 30 .................................... AAAAAGCAGTTGGCTATTCGCTCACAGGTA 82113 36 100.0 31 .................................... CTATGGGCTGGATAGATATAGAAGTGTGGGA 82046 36 100.0 30 .................................... TTCTTCCGCTATCATCAGATGTGATTTTAT 81980 36 100.0 30 .................................... AAATTCCTCATCACAATATAATGAGTACGA 81914 36 100.0 30 .................................... TCTTTTATTTGGTCTTTTACCCATTAAATA 81848 36 100.0 30 .................................... AATAACCTCGACTTCGACCTCGGTGACGTT 81782 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 100.0 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : ACCTTCTTCAATTACATCATCTAAATAAGAAATCCCTCGGCGTTTAGCTAAGTGCATTAGTGCAGTATAAATTTCTGATACTTCTAGTTCTTCATGTAGCCCCTTCACTCTTAACTCGTAAGGGTTTTCATTCACTTTATTACAAGTACTTATACCATTTTCCATAAGTAAATGTTTAATTCTTTCTCTTCGATGCTTTTTACGTCTAGTTAAGCGTCTAGATTGACGGTTAATTCTCCTATCTTCATTAGCTGAAGCGTCCCGACTACTAAATAATCTTACCCCAGTATCTATTACTTCCCCATTTGTAGCGTCTATAATTCCCCATCCTACTGAAGCAACACCAATATCTAGGCCTAAAACCAATTTTCTCATATGATGATCTCCTCTCACCTTGTGTACTAATCAAATTATACAATTTAGCGAATAGAAAATCCAATATATTCTGTGTTATAATAAAAATAAAGTAGTTTATAGAACCTTAAATTGACGAATTTGAG # Right flank : TTTTGCCCATGTCTGCATCAGCGCCTAGTTGTTTTAGTACTCTCAAATCAACAAACTTACTAAATAATGGTACATTCCCAAATATCGAATTGGCGATCCTGCTTTACAAGCAAAGAATCTGGAACATAAATAAAAAATAAGCATAAACCCAGTAAAACCCATTTTAAAAGATGGTATTATTACTGGATTTATGCTTTTTTATTTTTCCTTTTATAGAGGGAAAAATCTGATTATGTCCCAAGCTCTTTTGCTTTAAGATTTTTAAAACGGCATTTTAAAATTACCAAATGGATTTTTTCCTTTTTTACCTTTTCCGCCCATGCCGCCGGACATTTGTTTCATCATTTTTTTCATTTCATTGAACTGTTTGAGGAGGCGGTTTATTTCCTGAATTGGACGGCCACTTCCTCTTGCAATTCGTTTTCTGCGACTTGCGTTAATGATATCTGGATTGTCTTTTTCCATTTTTGTCATGGATTTAATGATGGCTTCGATATGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 88626-89450 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBR01000003.1 Listeria sp. ILCC804, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 88626 36 100.0 30 .................................... TTGGAACTATCGATGTAATTAAATTAATGC 88692 36 100.0 30 .................................... TCATGAACAGACGGGAACATATAAGGTAGC 88758 36 100.0 30 .................................... GCAACCTCTTTCGGGCAAACCGGCCAGCTC 88824 36 100.0 30 .................................... TCTAAAGTTGTTTCCCACCCGTAAAATTTA 88890 36 100.0 30 .................................... GTGATGGAGTATATATTCGCTTTAAAAGTA 88956 36 100.0 30 .................................... GATTCAGGGGAAAGCTCGGCAACGGAATCG 89022 36 100.0 30 .................................... TCGACATCATAAGAACAGATTTGTTATCTA 89088 36 100.0 30 .................................... GTACGGCGCTGGGTACACCTCTGGGTACGG 89154 36 100.0 30 .................................... AGGCTGCTGTCTTTGCGTCTTGTTTGGTCA 89220 36 100.0 30 .................................... GCGCACCTCTTAAATTTGCATAACTTAAAT 89286 36 100.0 30 .................................... GCGCACCTCTTAAATTTGCATAACTTAAAT 89352 36 100.0 30 .................................... ATTAGGATTTTCGTACTACGTCACTGGAGT 89418 33 86.1 0 ..........................C---....G. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.9 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : TGATTAAAAATATTGATGATACGTTACGTTATAATGAATTCGAGGAAGTCATGGATCTCATAAAACAACTTACACTAAAATATTCTAATTTTTACTGCATGGTATTTCCAAGTCAAATCGGATACGTTTATGTTAGCGAAGAATACATTGATAGTATATTAGTTATGGGTGAAGAAGCACACTCATTATTTGATAGCGTTACTTTATATGAACGTGTCTGTTCTCATTATCCGGATAAAATTATGCCAACTTATCATGAATTTTTATCATGTTTAAAAATTGTTGCGCCATATTTATTTACGAGCAAAAAACAAAGTATTCGAATGAATGTTAAAGAGTTAGTTTTAATTAAATTAATCAACGAATTATTCCAATACTTTGAGTTTACTCCAGCTCCGGCAATGCTTCATAGTCAACTAGAGTATAATTTTTTGTATGAAAGCTAATAAGTTTTATGATAAGATAGAAAATATCAGTAGTTTTTAAAACCTTAATTTGAG # Right flank : CTGATACATTTTTTGTTCGCTTGCTATGAAACTTAATATGTGAATTATTTCACGAATGAAGAAACTTGTTTTTTTGAAAAAAATTAACTGATTTGAAGTAGGTGTGCAATCTACTTCTTTTTAGTTGTATCCAAGTTACTATGAGCTAAAGGGACTAAAGACTATCGAATGTATTTAAAATCCTGATTTTATCCAACTTTTTATTCAATAAGAACCAAAAGAACTATTTTTATCAGAAAGCTACTTTTTACTTTATTTTTTCCACATTACTCATTATATTATAGATAATCAACTAGAGAATCTGGTAGTCAGGCGAAGGAGGGGTGCATAATTCTGAAAAATTAATATCGTGTTTTTAGGCAAAGAAATTGTTCGGTCTTTGTAGATGTTAAGGGAAGCATACGCAAATTTTTATGAACAGTTGTGATAAACATAGGGGGCCCTTTCATGGATTTTCAATACTCGCCGAAGGGATACGGCGATAGGGGGAAAAATGATGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //