Array 1 13358-12671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPR010000001.1 Microcoleus sp. FACHB-1 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 13357 37 100.0 37 ..................................... TATTCCCACCTGATCAAAGGAACAGAAGAATACAACA 13283 37 100.0 36 ..................................... TCACCATCCTCTATGAATGGGGCCAAATTCTTTAAG 13210 37 100.0 34 ..................................... AACCTGCTTACAGCATTGGGTCTGAAGTTATTGT 13139 37 100.0 34 ..................................... GCTCTAGGCTTCAACGGCCTTCAACAAGAGGGAT 13068 37 100.0 34 ..................................... AATTCCTGGGTCCAAGACCCAGTGATCGCGATAC 12997 37 100.0 35 ..................................... AAGTTGCTCTTGTTCTTTGCTAGCTAATCTCGAAA 12925 37 100.0 36 ..................................... CAAGCAACGACGCTCCCTGGACAACCTTATGTCAAA 12852 37 100.0 35 ..................................... TTCCCCGAACCCGTTGCCGCAACCAGAATCCCCGA 12780 37 100.0 36 ..................................... TACCAATTTCCTAAAGCTGTCGAGCTGACCGCATAA 12707 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 35 CTTTCAAATTAATGAATCCTGGCAACGGGATTGAAAC # Left flank : GCCAAACCCTATTTTATTTGGTCATTTATGACTTACCTAACAATAAGGCAGCGAATAAACGGCGGAAGCGATTGCACTCTTTGCTCTGTGGCTATGGAACCTGGACTCAGTATAGTGTTTTTGAGTGTTTCTTGACGGGAATACTGTTTGCTAAACTCAAAGTTAAGATTGAGGAATTGATTAAGCCAGCCGAGGACTCAGTGCGTATTTATGTCTTAGATGCAGGTGCTGTGCGGAAGACAATTACCTACGGCGGAAAGAAACCTCGACAGGATGAGACGATCATCTTATGATCGTAGCCAGCGTCAAATCTGACGGGTCGAAGCGGGGGCGAAAATCATGGGGAGCCGTCAAAACGCTCAGAACCTTGAAAATTAAAGAGTTGAGCCTTTTAGGGATATTCCTAACTGTTGCTCGTTACCCCATTTGACGCTCCTCAAATTGGGAGCCGTCAGAATCAGTTCTAGAACTCTCTCCCAGACTCGGTTTTAGAGCGCGGA # Right flank : CAACGTAGATGCTCAGTATACGATCGCGCTTGGATGAAGTAGATTGTGTTTTCCCCTATCAAGAAATCGCCGATGACTTCTTTGGTTTATTGCGGGCTTTGCATGAAGAAGCCAAACGTCGCGAGATCTGGAAAAAGTTTCGCTTAATTGTCGTACATTCGACGGAAGTTTACGTGCCCCTGGATATGAATAAATCCCCCTTCAATGTGGAACTACCGATTGAGTTACCAGAGTTTACTTCACAACAAGTACAAGATTTAGCTAGACGGCACGGACTCGATTGGAATGCAGGCTCAGTGGAGAAGCTGATGGCTCTTGTGGGAGGACATCCCTACCTATTGCGACTAGCGATGTATGCAATAGCGCGTCAGGACGTTACCCTTGACACTGTGCTGCTTTCTGCTCCCACCGAAGCAGGTCTTTACAGCGACCATCTGCGACGCCACTTATGGAATTTGGAAAAGCATCCAGAGTTGATGGAGGCGATGCGAGAGGTGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATTAATGAATCCTGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 36307-33712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPR010000047.1 Microcoleus sp. FACHB-1 contig47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 36306 37 100.0 37 ..................................... ACGGAATCCCAGATACGGGAAGCGGTCAAGCTGTTAT 36232 37 100.0 34 ..................................... TGATACTCTGCGGCCTAGAGCCAACTCATAACTA 36161 37 100.0 42 ..................................... AATGAGTCAGGCTGTAGCAATCTTGCTGAGTGAGCGGTTAGA 36082 37 100.0 34 ..................................... TTTACGGGATGACTCCCAATGAAGTGATGGCACT 36011 37 100.0 43 ..................................... GATGACATCCCGCTGGGCATTCACAAGGATTCGGTGGGTGGGA 35931 37 100.0 42 ..................................... CCGGCTGATGGCGTCAGAGGGAGTGGCAAGCGTGTTCTCAAG 35852 37 100.0 35 ..................................... AATGCACTAATTAACTGATAATCTAATGACATAGA 35780 37 100.0 40 ..................................... TGCTGAGTACTAATTGAAATCCTGGCACTGTTTGCCCTAA 35703 37 100.0 34 ..................................... CCCTTGGCTGATATCCTGCTGCGATAATTTGCTG 35632 37 100.0 33 ..................................... TATTGGATATGGCGAACGGATTGAGCTTGAGAA 35562 37 100.0 33 ..................................... GTCGCTATCACCAGATTCAAGCCGAAGCGCAAC 35492 37 100.0 36 ..................................... ATAGATGATGCGAGCAACTCCCATCACAGCAGCAAA 35419 37 100.0 37 ..................................... GCATTTAGAAGACGAAGACGAAGACAATGGCGACAGC 35345 37 100.0 37 ..................................... AAAAGTCCCGGATAGGACGGAGATTCCTCTTCCTCAA 35271 37 100.0 40 ..................................... TCTCAGTTGGGGGCAAAATACGATTGTTGGGTAGATTGGG 35194 37 100.0 35 ..................................... CGTATGATGGCTCAAAACACCCATTGCACAAGGCT 35122 37 100.0 44 ..................................... TGGGTCAGAGGAACTATACCGACCCGTAAAGGTTTGGCAATTGT 35041 37 100.0 32 ..................................... TCGCGTGTTAAGCCGAAGCATTAAACAGTTGA 34972 37 100.0 34 ..................................... TTCCTGGTTGACCAGGGGGGTGTTAGCGCTTTCT 34901 37 100.0 33 ..................................... CGAAGAGTGGAGAGAGACATATATCCCGAAAAA 34831 37 100.0 35 ..................................... TGATTTCACGGTAGTTAGGCAACTGAACCGGGATG 34759 37 100.0 34 ..................................... AAACTCCTGGGGATTGCTACAAAACTGCCACCTT 34688 37 100.0 37 ..................................... CATGTGATCGCTTTGAATTGTTTCATTTCGAGTCTAA 34614 37 100.0 34 ..................................... TTGGACGCGGCGACAGAGTGCCCTGACTCTAGGA 34543 37 100.0 40 ..................................... ATTTTTCGTGCTTTCCCCGGACGGGAAAACTGGGCAACTG 34466 37 100.0 33 ..................................... TCAACACAGCGATCGCATTCTCATCTGATATGG 34396 37 100.0 34 ..................................... ACGAATGAATATAGAAGTGATTGTGGACACGGCT 34325 37 100.0 36 ..................................... ACTCTACACAACCCTTCACATCATGAACTTTTTATC 34252 37 100.0 35 ..................................... GCGATCGCAAACTTTCTCTTTCATGCAGGACACAA 34180 37 100.0 35 ..................................... TCTATTGCGTAAGCGACCCAGCGATAATTTTCCAA 34108 37 100.0 35 ..................................... AACGGGGCTGAAAGCCGGGAGACTGAGCAAGATTT 34036 37 100.0 34 ..................................... GATATCCCAGCATCGCCAAGACCTGCCTTATCGC 33965 37 100.0 33 ..................................... GCTTTTATCAGATCGAACACAATCACAGTAGAG 33895 37 94.6 35 ........T.....G...................... AAAAATCTACGGAGTCCGTGGAAATGAACATACAA 33823 37 91.9 38 ...................T..........A.....T TCCAACTCGTGTTGTCGCCCATACTTTGGCAAAAGAAA 33748 36 86.5 0 ...T.....C......T...-......A......... | T [33741] ========== ====== ====== ====== ===================================== ============================================ ================== 36 37 99.2 36 GTTGAAATCGACTTAAATCCCTATCAGGGATTGAAAC # Left flank : GATTCGGCGAATGTGTTTCACAACTGTTCCACCCGTTTTGCCGATGGTTTCCGCTATGGCTTTGGTGCAGAAGTGGGAATTAGTACCCAAAAGATGCCGCCGCGTGGGCCGGTGGGGTTAGAAGGGTTGATTACTTATAAGTATAAAGTGACAGGGAATGGTCACATTGTTGCTCCTTATGCGGGTAAGGATGCTAAGCCGTTCACTCATCGGGATTTTTAGGTTTTTGGGTGGGGTGGAGGCTGTTTTGGTGACAACCAGTAGGTGTTTTTTTGAGGGAGTCAAAAATTGGGGCTGTATCCCTTATCCCACGGGGGTTTTAAGCTTTTTTCTGAAAAATGGGGTTGTCGGAAGTCTTGAAAGCTTTACTGAAATTGAGTTTTAGGCGTTTTTCTGTTAGCGGTTATTTTTTTATCGATGGCTGTAATGGTATATTGAGGTCAGGTTGTCAGAATCTGCACCTTGAAAACTAAATACAGTATGGGGTCTAGGCACCAGCG # Right flank : ATTTTAAACTGACAAGATTTTGCATTAATTGTAACAACCGCCAGTGGTTAAAACCACTGTCTCATAGCTAAAGTCGTCTAAAGACGACTGGATGAGCATTTTAGTCCACTTAAGTGGACTTGAGCTATGAGCCGTGAACTTAAGTTCACGGCGGACTGTCGGGTTTAGAGAGAAGAGAATGAAGCAAGATCGTAACTTACTCATTTAGCAAAAAATATCAGCCCTAAATTATCTCAGGCCCAGAAGATTGGCGTTCATGTTGTAGAAACGCTTGAAAAATGTTAAGCTATGTTAGCTTAATTAGCTGTAACTTGTCATCTAATGGACTGTATTCAATTAACTGGAATTCGTTGCTACGGGTACACAGGTTACTTAGCAGAGGAGCAAGTACTCGGACAATGGTTTGAGCTTGACCTAACCTTGTGGATAGATTTAGCACCCGCGGGAGAGAGTGACGACATTACCGAGACGCTGGACTACCGCCATGCGATCGAGAAAGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCGACTTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 89844-89003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPR010000047.1 Microcoleus sp. FACHB-1 contig47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 89843 37 100.0 36 ..................................... CCAATGACCGTAAATGGGCCAACGTTAGCCTCTATA 89770 37 100.0 38 ..................................... GTTAGAGGGAAATGATTTTTATGCCATTTGATACAAAA 89695 37 100.0 37 ..................................... TTGTGACTCGGTTGTAACTTGCTCAGAACTTGGTGGA 89621 37 100.0 30 ..................................... CTAAGTTAGGTTCGCTAGGGTCATCTTTGG 89554 37 100.0 36 ..................................... CGCCCGAAAGGTCAACACATCCAACGGTTGGCGCGT 89481 37 100.0 33 ..................................... GGTTTGGTCTAGCAAACCAAACACCTTTTCTAA 89411 37 100.0 38 ..................................... GAGTTTCAGCGCAATACAGATTGCGATCGGTGAACCGA 89336 37 100.0 39 ..................................... GCAAATGTGTAGTTGTAACTACACGCTAAAACCACAAAA 89260 37 100.0 34 ..................................... GAAGTTCAGCATCTTCAACAGCAATCGCATTTTG 89189 37 100.0 35 ..................................... AGACTAAAGACGGCAACTGGAAACTAGAACCTAAT 89117 37 100.0 41 ..................................... AAGTATGCTTTTCCAGTAAAATCAAGGCTGGAAGCGACTTC 89039 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 100.0 36 GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC # Left flank : ATTCCGGAAGATAAGCGCCGGACTAAAATTCATAGTATTCTCAAGTCCTACGGGCAATGGATGCAGTACAGTGTGTTTGAGTGCAGTTTGACAGATACTCAGTATGCTAAGTTGCGATCGCGTTTGCGTAAGGTGATTAAGCCTGACCAAGATAGTATCCGTTTTTATTTCCTTTGCCAGTGTTGTCAGGGAAAGGTGGAACGGATCGGGGGTGAGCAATTGCGAGATGATACGATTTTCTTTGCCTAAATCCGACAACCTATAGGTGTTGAGATAGGAGGGGGATTTTTTTGGGCTGTATTCCTGGCGATACAAGGGTTTGCAGCCTTTTCCCTTTTTAGGAGGTTGTCGGATTTCTTGAAAAGCTTGTTATATAATGGTTTTATCTATTTTTGTTTTGGGGGACTTGTTTCGCCCTAAGACTGAAATGGTATACTCAGGAGACCTTGTCGGATTTGAACCTTGAAAACTAAATACAGTATGGTTCCTGGATGCCTGCG # Right flank : AAGTGGCAGCACTGGATAGAAAAAACTCTTTGCGCCACAAATTCATGGCTATGGGTAGAAGAAAGACTCTTAGCTACATAGATAGCCTGTAAAAGTCGATAACTCTACACTGACCTATGACAACCCCACAATCCCCCAATACCAGACCCACCGACTTAGAAACACCTGGAGATGTTGATACCCCAGATAAGCAGGTTGCAGCCTCAACCAACGCTGATGTTTTGAGAGAACAGGCGATATCCGATTCCCAAGCCAGAGAAGATTTGCAATCCAAGCAAGATACACAAGCGGATAGGCAAGTTGCTGAAGGGGAAGATACTTCCTCTGATATCAAAGCAGGCGCTGCAATACAGATTCCTGGTGAGCTTTAAGATACCCCAGCTTGGAAGGTTACTTTTTTAGGACTTACGCAAATTTATCTTTGAACCACCATCTGTAGGAAAAATCAAAGCCTCTCTCAGCCCAAAAAAATTATCCGCTTCCCTCTCCTTTAAGGAGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 55818-56441 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPR010000058.1 Microcoleus sp. FACHB-1 contig58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 55818 37 100.0 34 ..................................... TTCTTCCGCCTCACATGGGGCTGGGCGATCGCGT 55889 37 100.0 35 ..................................... TTAGCTAAGAATCCCACCCTTAAGATTGTTTTTTT 55961 37 100.0 35 ..................................... ACGCTGTATGTCCACCCTTAGCTAAGGCTATAGGA 56033 37 100.0 36 ..................................... TCTGCCAGTTATCCTCTTCCATGTACTCATGGCAGA 56106 37 100.0 41 ..................................... ATCTTCAATGGTTGGAGGTTGGGTGCCAACCAACCTTCTCT 56184 37 100.0 36 ..................................... CATCTACTCTATTCTTTGCTAGTGGTATTAGCGTAA 56257 37 100.0 33 ..................................... TGTGATCAATCCCGACACTGGGGAAAAAAAAAA 56327 37 100.0 41 ..................................... ACACCCTATGCAGGGAGACCCAGGATTAACCGCGCATTTGA 56405 37 91.9 0 ..................C.C...............T | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 99.1 36 GTTTCATTAACCCTCCCGTCTCTGGGTGGGTTGAAAG # Left flank : CTGAAACTTGATGATTCTTTACATCATCCAGCATTTGTACCTTGACAAGATAATATTGATTCAATAGCGCGTCTCGTTCTTCGCGAACAGATGATAAGTGTAAGGGCAGTTTAATTGCTTTCCGCCCTTGGTAGTTGTCCGCTTCTCTCTGCGGAACTTGTCCGCAGATAGGGTGCAGGGTCGCGCCTAGCATCAGAGGGCAATGTTTTTATAACAGTGGTTTAGAGCCTCTGGTTATAAGGATACAGGCTTACGTGTCGTGGCAGCTACCCCATCGCCTTCGAGCAAGAAGGAATCCTCCCTAATCTTTTTTTGACGGGTGAAAGCGGGGGCAAAAACTCCAGGCCGCCGTCAATAGTTCAAAACCCTTATCTGACACTGGTTTTAGGCTTTCACAGCAGTCAACTTTCTCCTTGGGAAAGAGCTGAAATGAACAATTTCAAATCAGCCGACAGAAATGTATTTATCAGCTTGTGTAGGTAAGGGTTTCAGCGGGCGCG # Right flank : TACCTAGTGCATCAGTTGAAGTATAGATTCCGAGTTGGGACTTTAAATACGGAGGATTGAAAGGCAGCAATACGGGATGCTCACGATTGCTAATCTGAAGATAGACACGGGCTTGCCACTTTTTCTATGTCCTGGATCATCAACGATCAGGGTCAATCGCTGTAATTCACCTATATAGTTTCTAAACTTCTGTTAGAACGTTAATTATCTCACCCGCGCTCAATTAGTGTACAAGTACTAAAAACACCCCGGTTTTGGAAATTAATTCTTTAAAACTGTTTTTTCAGTGCAATTATGTCGGCTATGAACCTGAAACGCCCTAGATTCGTAGTTTTGGAAATTAATTCTTTAAAACTGACCATTAATTCTTTAATGGACAATATTCGTACAAAATGACCCGGAGACTACGCCTGCCTCAAGCATCCCGTATTGCTGCTACCTTCCGGTCCTGACAAGATTTGGGCGTTGAAACCGCATAGTTCCAGGTCATAATTATCATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATTAACCCTCCCGTCTCTGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.50,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 28925-29106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPR010000059.1 Microcoleus sp. FACHB-1 contig59, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 28925 37 97.3 35 ...................A................. TTCGAGGGAATTGTGAGAGTTAGAGAAGGAGAAAG 28997 37 100.0 36 ..................................... CGATCGTGTGATAGCCGCTGACAAAAACACACTCAT 29070 37 97.3 0 ..................................T.. | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 98.2 36 GTTTCATCAACCCTCCCGTCATAGGGTGGGTTGAAAG # Left flank : GGTTAGTTTGACGGTTGGAAAACCGTTTTGCTTTCTGACCCTGGTAGCTGCCCACTCCTGATGCTGCCGTCTATTGAGTCCTTTGTCCAGACGGGAATCTTACCTGTGTTATCTAAGTCAGATAATCTTATCTCTGAATGATACAGCGTAACAGAGGTGCGCTCCCAGCAATAAGGAGTAATGCATGACTTGCACCAGCCCTTGGCAACAGGGGTGCGGGCGTTTCCTTGGCAACAAGGGGGCGGACGCTGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCTATTTATTTTTTATTTTTCTGACGGATCAAAGCGGGGGCAAAATCCCGGAGGAGCCGTCAATTGTTCAGAACTCTTGCCTAGTCTTGGTTTAAGACTTTTACTTTCATCAGTATTCTCTTGGGAGAAAGAGCTGAAATGAGGATTTTAAAATCAGCCGACAAAAATGTATTTGTCAGCTTGTGTAGACAAGGGTTTCAGCGGGCGCG # Right flank : GTCTGCCTTACGTTATTTTCAGAGATTTTTAGGGAGGGTTGAAAGGCGCACTTCGTTCGGGATTATTCTGATAGAGGTAAACCTTCTCAACAGGATGAGATGGTAACTTTCTTAGTTAATATTCCACGTTCAGAAGTCTAGCGACAACAATTTGTTAACAGTTGCCTAGATGAAGAGTCGCCGTTAACAGCGACGTCAGTTTGTTAAAAACGACATCAATTTGTTAACAGCGACGTTTAATTTGTGAATTTACAACTGTTATAATCGGGATGACAGGATTTGAACCTGCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGATAAGTTATAGCCGTAACTCACCTATGGTATCACATTGTATCGGCAATCAGCCTTCAGCTTGCTAGGATAATCACTGTAACTTCAGTGGGAGCTGGGCTGGGAGTGGTCGTTAAACCAGAATGGTTGCGTGTCAAAGCGCCTCAATGGGAACGAGTCGGTAA # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCAACCCTCCCGTCATAGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 44610-44859 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPR010000069.1 Microcoleus sp. FACHB-1 contig69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 44610 37 100.0 32 ..................................... GGCTAATTTGAAGGCGTCGGCGTAGAATTCAA 44679 37 100.0 36 ..................................... TTCAGGATTTGATTTACAGCCTCATTAGTCTTGATG 44752 37 100.0 34 ..................................... AAATACCCACGAGCCACTCCCGACTGGTTCGTGA 44823 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 100.0 34 GTTTCAACGACCATCCCAACTAGGGGTGGGTTGAAAG # Left flank : AAAATTAGCAATTGATGCCTATAATTTTCGCTTACAAGCTATAATATAATATAAGAAATGTACCTAGAAAATTAAATATAAATAGCGCCGCAGTCCATGCTGTAAAAAGCCTCTGAACTGTGAAAAATACGGGTTAGTTTGACTGTTGAAAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCCTGAAGCTGCTGTTCTAAAAAGACAGGAATTAGGTGCGCCCCCAGTAATAAGGATGCGGGTATACCGCAGTGGTGGCTACTGAATCACCTCCGAGCAAGGAGGAATCCACCCTTTTTATTTTTATCTGACGGCTCAAAGCGGGAGCGAAAACCCCAGGGAGCCGTCAAAAGTTCAAATCTCTTATCCAGACTTGACTTCATAAATTTCGACAGCGCTCAATCTTCTATTTTTTAGGGAGATTGAACAAGAATTTTAGGGAGCCGTCAAAAATGCTTCTAAAAGGCAGTAGAGATAAGGGTCTAGGTGGGAAGG # Right flank : GTTTCAAAGGTCTTCAAAACCTTGATTTTTTATAGAAAAGGTTGGGTTGAAAGCGAGTCCAGTTGTGTCCTTGTTAGCTGCTTTAAAAGCTAAAGCCGTTAATCTAGACTAGAACAGACACTCTCGATGAGTGCTTTACCAAACAACTAAAATAGTTGGACTATTTTGGCGATATCAATTTGTTATGAGTGACAAGAATCTGTTAAAGATGACACCAATGTGTTACCGATGACAAATAATTAGTTACTGTACACCTTGAAACCCTTGTCAGTCATTATTTTGAGCATATTTACGTAAATGGACACAACTGGACTCGAACCAGTGACCCCTACGATGTCAACGTAGTGCTCTAACCAACTGAGCTATGCGTCCGAACACAATTTAGAATGTTAGCACAGACATCATGCAAAACACAAATAAAAAAAATTGACGGATTTTGATGGGCGATCCGAAACTAAAACCTAAATTAGTGCGTCTTAAGGGCGACGGCTTCTGCTAGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGACCATCCCAACTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 28974-26412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPR010000007.1 Microcoleus sp. FACHB-1 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================================== ================== 28973 23 100.0 51 ....................... GTCATTGGTTTGCTTTGAATGCTGTTACACCAATCATCTTTCCGCTGACTT 28899 23 100.0 50 ....................... CTATACCTAAATCATCTCTAAGAAAACCAATTAATCCTTTCCGCTGACTT 28826 23 100.0 52 ....................... CTTTATGGCAGTATAGGTAAACCTACAGCAGAACGGTTCTTTCCGCTGACTT 28751 23 100.0 50 ....................... TCGTTAGTCAGTACTTGATTGCCAATCGTGATAAATCTTTCCGCTGACTT 28678 23 100.0 49 ....................... ATAATTTATCATTGGTCTTGTTTTTTCAGTATGTGCTTTCCGCTGACTT 28606 23 100.0 53 ....................... GAAAATTATGAAGATTGGGAATGGAGAGAAGGACATAAACTTTCCGCTGACTT 28530 23 100.0 49 ....................... CTCGAAAATTGACCCAGCCATCTTTTACCCCCCCTCTTTCCGCTGACTT 28458 23 100.0 51 ....................... ACAACGGGAACAGCTAATCCGATTGTGGATGCATTTGCTTTCCGCTGACTT 28384 23 100.0 54 ....................... ACGGCAATGTCGCGATTTGTCATCGCTCCAGCGATCGCTCCTTTCCGCTGACTT 28307 23 100.0 49 ....................... TCTTCTGTCATATATTTAGTTACTGTAAATATAACCTTTCCGCTGACTT 28235 23 100.0 52 ....................... ATTTCGTGGGCACCCTCACCCCAGGAGGAATATTCAGCCTTTCCGCTGACTT 28160 23 100.0 52 ....................... ACATTGATTTGACTGATGCCACCCACCGGGGCTTGAGTCTTTCCGCTGACTT 28085 23 100.0 59 ....................... ACCAATTCCACCCAGCGATCGCGCAATTAAGGGATGTTCGTCCAGCTTTCCGCTGACTT 28003 23 100.0 53 ....................... GATTACATCGCCGCTAGGCAAGATATAGCAAACCTAAAACTTTCCGCTGACTT 27927 23 100.0 55 ....................... TTTCTACGGTGGTAGGAAGCTTTTTTCTTTCGTAGGGTAGACTTTCCGCTGACTT 27849 23 100.0 52 ....................... TTGCCAATACATGAAAATCTGTTGATTCCTGCTCTCGACTTTCCGCTGACTT 27774 23 100.0 50 ....................... AAGACGATGGCAATTCCAAACTAAATTTGCCGTTAACTTTCCGCTGACTT 27701 23 100.0 49 ....................... AGCTTGTTTATCTGTCGAATGATCCACGGCTCCAACTTTCCGCTGACTT 27629 23 100.0 54 ....................... AGTAAATAGGTCGCCCCAATTCCCAAGCTGAACGTTGGCGCTTTCCGCTGACTT 27552 23 100.0 49 ....................... AACTGAAGGGATTAGCGGAATACTGAGCATGTCAGCTTTCCGCTGACTT 27480 23 100.0 51 ....................... ATCTGTTTAAACGCCTGACCAAACCCCCCATCGGGTGCTTTCCGCTGACTT 27406 23 100.0 56 ....................... TGGACCAATACTTAGCTCCAATGGCGCGTTGGATGGGGGTAGCTTTCCGCTGACTT 27327 23 100.0 50 ....................... AAAAGATTGACGCCTGCTGGATGTATCTCAATCGAGCTTTCCGCTGACTT 27254 23 100.0 50 ....................... GCTTTAAGCAACTGATACCCATTTGCAACGAGAAGACTTTCCGCTGACTT 27181 23 100.0 52 ....................... GATAAATTGGGGTTGGGGTCGTAGAGGGTTCGGGTTCTCTTTCCGCTGACTT 27106 23 100.0 50 ....................... CCCCAGACAGTTCAGAGTCAGCTCAATCTCCCTCCACTTTCCGCTGACTT 27033 23 100.0 50 ....................... CTTATAGATCCAGTCACGCATTGTGGAGAAGGAGTTCTTTCCGCTGACTT 26960 23 100.0 49 ....................... CCGCATTCTCTTGATAAACAAAAGCTGTCATGCCGCTTTCCGCTGACTT 26888 23 100.0 52 ....................... GCCACAGGCTTTATGCTTTATGTTCGCGGAGGGCACTACTTTCCGCTGACTT 26813 23 100.0 57 ....................... TCTAAAGATTTGTTGCCCTCGATCTGCTGCCCTGCCAATGCAGCTTTCCGCTGACTT 26733 23 100.0 50 ....................... CCTTAAGTGGGAATTGTTTGAAGTCATTAGGGAGAACTTTCCGCTGACTT 26660 23 100.0 51 ....................... AATTCAACTTCGACAATAGGCCGGAGTTTATCCATTTCTTTCCGCTGACTT 26586 23 100.0 56 ....................... TTTAGTAATGTCTCTGCTTTCACTGAGTACTCTTCTTTTAAGCTTTCCGCTGACTT 26507 23 100.0 50 ....................... AAGCTGAAGTCATCGTTCCTATTCAAGACGCCGAACCTTTCGGCTTAATT 26434 23 95.7 0 ..............A........ | ========== ====== ====== ====== ======================= =========================================================== ================== 35 23 99.9 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : TATTCTGCAAGAAGCGCTAAACCTAGCATGAGAAAGGTATCGGCATAGGTGCCGAATTTTTTGCCCACTAACAGGCTTTTTATCATCTGTAATGCTGCTCCATTGCTGGAGATTTATCTTGAACAGTATTCTACTCCCCTATGGAAGAGGGGTCTTCCAAGGTGGGGATTGGGGAAGTTTTTGGATACTCTATATATATGAAGAATTTTTGGGCGAGATTTGAGTAATAAGCTTTGTTGTCTCGACAAGATTAGGCAGTTGGCTTATGCTGAGTACAGCAATAATTTTCGTGGGTCAAAGCGAGGGCGAAAAACCGGGGAGTCCCACGAAAAACGCCAGAACCTTGACAATTAAATAGTTTGAGCATTTTCAGTTGCTCAGTAAATGAGAAATGGTTTCAATTAGTGGGGCTGAAATGAGGGTGAAAAAGAGTCCCACGAAAATCTTTTGTAGAACCCTCTGTCCGTCGATGTTTCAGACGGCGGACTTTCCGCTGACTT # Right flank : CGTTCTAATATCTTTAGCCCTGAATTGAAGCCAGATACTTTCGGCGCAGATGGAGACGATCTGGGGTGGGGTGGGATTATTAACATGAATATCCCTGTAAACGACGCTACACAGCCTTTTGCAGGCCGTCCTTTGTTCGTCACCATCATTGTTGATGGCAATGCGGCTGACTCGGTGATGTCATCGCCAGTGTTTCAAAAAGCTATCACCTCCGAAATCATAAATTCAAGTGGCTCTGTAGGAGCCGTCACGTTTGGCAGGCAGAGAACTGACTGGTCTATTACATTTGGAATAATGTCGGACAGCACAATCAAAAGTTTTGAATGCATAGACCCCGAAAAAGAAGCGGACAAGCCCCTTTGGGGACAGCAAATATGTGTATAAGACTACGGTATACCCCGACATGGCTTGCTGCCGTCACTCCCCTAGCGCATCCTCAAGTAAGTCCGTAATCTGCTCTTGCAAATTTTGGCGGTTGTCGTCATAGAGTTGAACCGTTC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 36722-39584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPR010000007.1 Microcoleus sp. FACHB-1 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================================== ================== 36722 23 100.0 51 ....................... CTCAACGGCTCTGCCCGTTCCGTCCCCAAGATCTGGTCTTTCCGCGAACTT 36796 23 100.0 51 ....................... AACACACGGGTTGTGGTCTTTCACGAGAGCATGGAACCTTTCCGCGAACTT 36870 23 100.0 61 ....................... GGTCGCGCAGTAGTTGCTCCGGCCTGCCCTTGTATGTGCTCTCACCCCTTTCCGCGAACTT 36954 23 100.0 52 ....................... TACTGGTCGCCTAGTCCCAATTTCAGGGCTACCTCAGTCTTTCCGCGAACTT 37029 23 100.0 48 ....................... ACGCAGTCTTCGGGAGCCATCCAAGCAATGGCGTCTTTCCGCGAACTT 37100 23 100.0 52 ....................... AGTGTAACTCCGCACAATCACAACAAACACAAAAGCCTCTTTCCGCGAACTT 37175 23 100.0 50 ....................... ACCCCTTGACCCTAACTATTTAGCTGGCGGCGCGAACTTTCCGCGAACTT 37248 23 100.0 51 ....................... ACCAGTGGCTTCAGCTCTTCCATGTGGTCTTTAAAGTCTTTCCGCGAACTT 37322 23 100.0 50 ....................... GTTAAAGAGCTGGTGCTGGGGGTAAAATTACTATTACTTTCCGCGAACTT 37395 23 100.0 49 ....................... AATAAATGTAGTAACGCTGAAGAATGGATTGATAGCTTTCCGCGAACTT 37467 23 100.0 46 ....................... ACGACGTGGTGTTAGTGGCGCTGTTGGTAATCCTTTCCGCGAACTT 37536 23 100.0 50 ....................... TTCAATAACTCTATCCTCAGAACCGATCCAGAGAGTCTTTCCGCGAACTT 37609 23 100.0 56 ....................... TTTGCAACGCTGGCAATTGTCTAAGCGCTTTTGTTCTTGCCGCTTTCCGCGAACTT 37688 23 100.0 53 ....................... ATTGAACTTAACACTTTCCATTTCACACCTAGTAAATCCCTTTCCGCGAACTT 37764 23 100.0 57 ....................... TTTAATTTTTCATCAGTAGCCTTAAAGATTTTAGGCTTAGTGGCTTTCCGCGAACTT 37844 23 100.0 50 ....................... AGTTCAACCATGATTGAAGCACGGCATGAAATCCGTCTTTCCGCGAACTT 37917 23 100.0 49 ....................... TATATGTTATTAGCTCCATTATGGTTACTTAGAAACTTTCCGCGAACTT 37989 23 100.0 52 ....................... TAGAACACCCGATAGTACTTGTCGAGCATATTACCCGCCTTTCCGCGAACTT 38064 23 100.0 62 ....................... CCATCCCCGTAGTTATAGCAATCGAGTAGGGTGTCGATTGAATCTTTCCTTTCCGCGAACTT 38149 23 100.0 50 ....................... TCTAAGGGATAGTGGGCCTTGAGGTAAGCGCCCTGGCTTTCCGCGAACTT 38222 23 100.0 58 ....................... CTATAGTACTGGGGGTTTCGACTAGGAAAATACCACGAGTTCAACTTTCCGCGAACTT 38303 23 100.0 58 ....................... GCCCCTACAGCACAGCCACAAACTGAGGCGATACGTGCTGCTACCTTTCCGCGAACTT 38384 23 100.0 50 ....................... TAAAGTTTTACTTTTATCTATCAATCACATATATTTCTTTCCGCGAACTT 38457 23 100.0 56 ....................... ATTAATGCCGAGCGGCAGGAGTTGGCACGAACTCGGCTGGAACTTTCCGCGAACTT 38536 23 100.0 50 ....................... GGCGGCTTAGTTCAAGGATTTTGGCTTTCATCTCATCTTTCCGCGAACTT 38609 23 100.0 52 ....................... CAGTAGATACATGAGAGAAAACACAAAGACGCTTAGAGCTTTCCGCGAACTT 38684 23 100.0 50 ....................... ATCAACATTAAACTCACTAACTGTTATCACATCATTCTTTCCGCGAACTT 38757 23 100.0 50 ....................... CTTAGTGGGTTACTACGGCAAGGGCGGGTATCGGCTCTTTCCGCGAACTT 38830 23 100.0 48 ....................... GAGGTAAAAGCTTTGTCTTGTACGACTCCTCCAACTTTCCGCGAACTT 38901 23 100.0 52 ....................... AATACAAACTGAATCTTAGCTGTACTGAAGTTGTTTAGCTTTCCGCGAACTT 38976 23 100.0 50 ....................... ATACCTGACTGCACGCCGTATTGAACCTCTGCCCGACTTTCCGCGAACTT 39049 23 100.0 50 ....................... CCTTCAGACGACCCATCGCGGCATTGGACGCTGGAACTTTCCGCGAACTT 39122 23 100.0 51 ....................... CCCACTCGACAAAATCTTCTCTAACTAGTCCCTTCAACTTTCCGCGAACTT 39196 23 100.0 50 ....................... GACTGGGGTTTTAATTTTCATGCACCTCACCTATGTCTTTCCGCGAACTT 39269 23 100.0 49 ....................... AGCTTCTGGGGATTCATCTTGAGGAGCGATCGCACCTTTCCGCGAACTT 39341 23 100.0 50 ....................... CAGGTTTAGGGGCATTACACCCTAGAACAATAGCTGCTTTCCGCGAACTT 39414 23 100.0 49 ....................... TAAGTAGTTCCAACAGATAAACCTGATACGTTCACCTTTCCGCGAACTT 39486 23 100.0 53 ....................... TTAAAACTGGCTTAGCCTTGCGATTTCTTCCACGCTTGGCTTTCCGCGAACTT 39562 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ============================================================== ================== 39 23 100.0 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : TCTACGATTTACCGGATACGAAAGCAGCCTCTAAGCGGCGAACTCGACTGCACAAGCTACTTTCGGGTTATGGTAAATGGACGCAGTATAGTGTTTTTGAGTGCTTTTTGACAGGAATGCAGTGGGCGTCGCTGCAAATCTCTATGGAGAAGTTGATTAAGCCCTCTGAGGATTCGGTACGAGTTTATGTGTTGGATGCGGGAGCATTGAAGCGTACCCTTACCTACGGTTCCGAACAGCCTCGCCAAGACAAAACTATCATCCTATAATTGGGCTAGTGAAATTTTTCGTGGGTCAAAGCGGGGGCGAAAAACCGGGGAGTCCCACGAAAAACGCCAGAACCTTGACAATTAAATAGTTTGAGCATTTTCAGTTGCTCAGTAAATGAGAAATGGTTTCAACAAGTGGGGCTGAAATGAGGGTGAAAAAGAGTCCCACGAAAATCCTTTGTAGAACCCTCTGTCCGTCAAGGTTTCAGATGGCGGACTTTCCGCGAACTT # Right flank : CAATTGTCCCAAGCTGACACCATCCACCTAGCTGGAACCTTTCGCATCTGAAGCTAAGTCTAGTTCTTCTATCTCTACTTTGAACGTTGTAACATGGTTCGTCGCCTAAAACGGTATCTCTTACTGAGTGTCCTGACGCTTGCCGTAATGGAAAATTCCCGCCCAGCTTATGTATCGCTGGCTCAGGAACCCCCTGCTGCGAACTCCTGCAATCCAGAAGAGCCATTGCAAAGCCGAGTGATTATACCTCTAGAGCAAGCCCGAACCGCGCTGGAGAACAAAAAAGGGGAGAGTGCACTTGATTCCTTACAAGAAGCATTGCCCATCGCCCTCCTGTTAAAGGATACTCGTATGCTATCTGACGTGTTACAACAATGGCTTTTGGATGCCAACGAAGGATATTCCACAACCCGATTTCAACGGCTGATGCAGCAAATTGACGTGAAAAATCAATCGGCACAGATTCAGGCCGTATTGGAGCAGCTATTACAACTCACCTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //