Array 1 219688-221118 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFZ01000002.1 Salmonella enterica subsp. enterica serovar Gaminara strain 96-0357 NODE_2_length_351181_cov_2.87351, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219688 29 100.0 32 ............................. CCCGGTTTTACCGCCAACACTCACTATATTGT 219749 29 100.0 32 ............................. CGTTGCTGGCTATTCGAACTAACCTGATTGTT 219810 29 100.0 32 ............................. GCCTCAGCATTGTCATAACCCCACGCCTGGCA 219871 29 100.0 32 ............................. CGGCTCGACCGGGAGCTTGCCGGCATCGTGGA 219932 29 100.0 32 ............................. CAATCATCTGATTTTTTATCATTGAGAGATAT 219993 29 100.0 32 ............................. GCAACTTCTTATATGTAAAAAACCGTTATGAT 220054 29 100.0 32 ............................. TCCGGGGAAAGAACTCGCCTCGTCCAGCGTCA 220115 29 100.0 32 ............................. GCAATATGAATAACAACGTACCACTCATCGCA 220176 29 100.0 32 ............................. GAGCACTTTTACTGTAGGACTTGTATGAATCT 220237 29 100.0 32 ............................. CGGCCGTAGCGCCGCTCAGTCCGGGGGATGGT 220298 29 96.6 32 ...........A................. CAATTGCGTTCTTGCTTATGCCCAGCGACTTA 220359 29 93.1 32 ..G.........T................ ATTTCAAACACTCCGGGTCTGCCAGCGCCTCA 220420 29 96.6 32 ..G.......................... CGGCGGCGGACGCCGCTCAGATAGCCAAAACC 220481 29 96.6 32 ..G.......................... TATACAGGATTCTCACACTTTGGTTTGGTCGA 220542 29 96.6 32 ..G.......................... CGTTTTTTTTATTTGTACTATTGTCAGTACCC 220603 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 220664 29 96.6 32 ..G.......................... CACCAGGTAACAATATCGTCCCCGACCTTTAT 220725 29 96.6 32 ..G.......................... GCGAAATTCCCCAGATACCGCGCATCGGCACT 220786 29 93.1 32 ..G.........T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 220847 29 93.1 32 ..G.........T................ CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 220908 29 93.1 32 ..G.........T................ TTGCCACAACCACAATGGATCAGGAGCAATTA 220969 29 93.1 32 ..G.........T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 221030 29 93.1 32 ..G..........T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 221091 28 89.7 0 ..G....................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 96.9 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228971-230525 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFZ01000002.1 Salmonella enterica subsp. enterica serovar Gaminara strain 96-0357 NODE_2_length_351181_cov_2.87351, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 228971 29 96.6 32 ............................T TACGGGTGGCATACGACAGCACAGCGCGTACC 229032 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 229093 29 100.0 32 ............................. CGCCAGCGCTGAGGTGAATTTTAACGGTGTCA 229154 29 100.0 32 ............................. AAACAACTCTGTCTATTTTATGAATAGTTAAA 229215 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 229276 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 229337 29 100.0 32 ............................. GTACGTTGCCAGATTGCTTTCAATGATGGCGT 229398 29 100.0 32 ............................. TACTGACACCTCAACCTTTTATTTATAAGCCA 229459 29 100.0 32 ............................. GCCGGGGTTTCCCGGAGGCATTCTGATGAAAG 229520 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGA 229581 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 229642 29 100.0 32 ............................. AAAACCCAGGAACGGCACCAAAATTTACACAT 229703 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 229764 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 229825 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 229886 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 229947 29 100.0 32 ............................. GAGCATACGGAAATTAAAGGGGTTAACGATCA 230008 29 100.0 32 ............................. CGCGCAACATTCATTACTGCCCACTATTCAGA 230069 29 100.0 32 ............................. AACGCGCCGCCTTAGAAAAACAGCGAGGGGAT 230130 29 100.0 32 ............................. CGTCCTGTACGTGGTAGCGATAATCGTAATAA 230191 29 100.0 32 ............................. ACGCTGAAAAACGATATTTCGCTGACCTATGC 230252 29 100.0 32 ............................. GCTGATACGCAGACGATCACAAACTATATGGG 230313 29 93.1 32 ...........................TT TAATCATTTTGTTTAAATCCCGGATCACCTCC 230374 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 230435 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 230496 29 96.6 0 ............T................ | A [230523] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTGGTTTGTCATGAATGGTGTTGATGCTGAGGGATAAAGTATGATGAAATGAAGTAGTTAAATTTAATTAATTAAGGGTATTCATGGAAATGGATGTAGATAGAGAAGCTACAAAGATTTTGGTGAATCTAATGTAATAACTTCTCTATACAACGGAGTTAGAATAATACCCGTTATCCAACCAATCCAAAACGTTTACTATAATAGCTAGCTTCTCCGGCATCAGATACCAGCACAACCTGTCCGGAAGGGCGATGGTGGCGTTTTCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTGGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTC # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //