Array 1 1370794-1369968 **** Predicted by CRISPRDetect 2.4 *** >NC_022737.1 Staphylococcus pasteuri SP1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1370793 33 100.0 33 ................................. AACTTAATCTTCCTTTTTGTGTCCAACGTGTTT 1370727 33 100.0 33 ................................. AACACAGTGGTTGGTTACCCTTAACATTAGTAA 1370661 33 100.0 33 ................................. AACAAATTATTTGGTTTGCACTTTTAAATACTA 1370595 33 100.0 33 ................................. AACTAAAAGAGGGAACTTGGCGTACCGAAGAGA 1370529 33 100.0 33 ................................. AACGGTATGGCGCTAACGGTTGGACAGGTTCTC 1370463 33 100.0 33 ................................. AACAAAGATGGAGAAATATTAGACCCGGTGAAT 1370397 33 100.0 33 ................................. AACTACAATAGAACGTACTTGCGACTTTCTCAT 1370331 33 100.0 33 ................................. AACCAAACACCTAATGTTAAAGCGTCTTCAGGT 1370265 33 100.0 33 ................................. AACTATGCAGAATACGGTCATACTTATTTAGTT 1370199 33 100.0 33 ................................. AACGAATTAGGCTTTATCACTAACAAAACCGAC 1370133 33 100.0 33 ................................. AACCAGAAGTTCTTGATTCAATGGATGAGTTAG 1370067 33 100.0 33 ................................. AACCTGAGGCAGAAATTAATAAAATGCAGCAAT 1370001 33 100.0 0 ................................. | A [1369969] ========== ====== ====== ====== ================================= ================================= ================== 13 33 100.0 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : ACAATACGGTGGCAAGTTGCTATTAATATATTTGTATCCTGAAGCAAATTTAAGTCCAAAAGAACAAATACGTTTGAAAGAGTTAATAATATCACTTGGAATTGATATTATAGTATTAACAGGGTCATTGCATTTTTTAGCTGAGGATTGGAAATATAATAACTATATTAGATGTGATAATCAAAAAATATCATCTGAATTGGTAGATAATCTACTTTGGAATGCCCCATTAAATTTTGAAAGAAGTGAAATAGAGCAGAGTTTAAATCAATTTATATTAGCTTACCAGGATAAAATTGAAATAAAACCGATTATCTCTAATTATCAAATTGCTCAAATTATGTTATTTAGTTCAATTGATTTATATGTAGGAGTTTCATATATGCAACATTGCAATCATGAATTTATATTGAATATAGATGAGACGAAATTACCCTTAAGTATGGCTAAATATTTAGAACAGTTTGTTAAAGAAAATTAACTATAATTTTGCGCTAGAG # Right flank : ATTGGAGGATATATGAGTAGCATGAGGAAGCCGATTATAAAAAATATTAGTTATTCTAATGAAGAGCTAGTCAATTCATTAGGCGAGTGGCAACAGAGTGATGATTCCAAATTTTTACTCAGATATCCCACTGTCTATATAATAAATGATAAAAATAAGTCTGATCACTTTAATTTGTATGTTGGTGAAACAACGGATATCAAAAATAGAACTATTCAACATTTGAAAAATGATGTGAAGCTTAAAGACTATTGGAAATCATTTTACAGTTCTGATACGTCTTCGATGTATGTTATAGGACATCCGTTCTTTAATAAGTCTTTAACTTTAGATATAGAAAACAAGTTTATGCAGTATTTGTCTAGTGTAGATGCTGTGACTTCAATATTTAATAGTAGAACAAATCAGCAAAATGAATATTATACTTCTGAAAAATTAGATGAAATATTCACAAATATTTGGCAACAATTACATAAAGAGAATAGCAAACTTTTTCCTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1376964-1376468 **** Predicted by CRISPRDetect 2.4 *** >NC_022737.1 Staphylococcus pasteuri SP1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1376963 33 100.0 32 ................................. AACGATACTACGCATTTTTCTAATTTTAGACT 1376898 33 100.0 33 ................................. AACCTTGCGGATAATGATTCGAATTGTTTGATT 1376832 33 100.0 33 ................................. AACTGGTCAAATGGAATTATGGTCATCAGTGTA 1376766 33 100.0 33 ................................. AACACCACTACCTGATTTCTTTAAGTTTTCAGC 1376700 33 100.0 33 ................................. AACGAGTTATTAATTCTTAATACTTACCATCTA 1376634 33 100.0 33 ................................. AACATTATACACAATTTTCGGATACATCCAGTA 1376568 33 100.0 33 ................................. AACTGAATAAGAAAGCATTCCTAAGCCAGTATT 1376502 32 87.9 0 ....................G.A-........T | AA,T [1376471,1376475] ========== ====== ====== ====== ================================= ================================= ================== 8 33 98.5 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : AAGGATTATATACAGACTTCGTCATCGTTAATCAACAAGGTCATCGTGTGCGACCAGGGCAAGGCTATGTACATCATGTCGCAGTCAATCTACCTACAGATATAGACTTAAACGATATTTATGAGAAAATAGCACGACAACCTAACCCTAACTCCGGCATCATCGATCGATACTTCTTCAAATCATTATACTATCGACATAACCAAATCCTATTCGAATTTGCGACAGCAGAGCCAGGGTTTACCGTTGATACACCCGTCGATAAACTAGGTCAACAACTCAACCTCCCCGATTTCCTAGAGGACAAAAGAGACGAAATCGAAAGCCAATTGAGAGAAATATAAAATACAATATAAAAGCACTCGCTAGTACGGCGAGTGCTTATTTGTGGTTATAAAAGTAGATTTTTATTTGTTTAAGATATATATTTAGATTATCAAGTAGATAATACGAAGTATGTATTACTAAAATTTTTAGTAGTAAAGATTTATACGCTAGAG # Right flank : AATATTTTAGTTGCAATGCTATTGAATAACAATTATAATTTAATTACAGACAACAAGTTTAGCTAACTTGTACTCATACCTAAAATTACAGAATCTACTGAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGATTTTTTTGTTTTAGAACAACTTATGTAGAAAAAATATAAAAAGTAGTGCCACGTTTATTGGTTTTAAATTATAATAAAATAAAACAAATAAGGTGGGTGTAAACTATGAAAGAAAAATATATTTTGGGTTTAGATTTAGGTATTACATCAGTAGGATATGGAATTATTAATTTTGAAACTAAAAAAATTATAGATGCAGGAGTTAGGCTTTTTCCAGAAGCAAACGTAGATAATAATGAAGGTCGTAGAAGTAAAAGAGGATCTAGACGATTAAAAAGACGAAGAATACATAGATTAGAACGAGTAAAATTATTACTCACAGAATATGACCTAATAAATAAAGAACAAATACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //