Array 1 215110-212945 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBT01000005.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2716 NODE_5_length_287671_cov_4.87841, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 215109 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 215048 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 214987 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 214926 29 100.0 32 ............................. CGGTCTGTAGTCGCATGGCACGTCCTTCGGGG 214865 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 214804 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 214743 29 100.0 32 ............................. ACCATGCATTGAAATGCCAGATGAAAATTGGG 214682 29 100.0 32 ............................. CTGCGGGTATCAAAGCGTTCAACGTTCTTGTC 214621 29 100.0 32 ............................. TTTCTGACTTTTGAGGGGGATATTTAGACGGG 214560 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 214499 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 214438 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 214377 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 214316 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 214255 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 214194 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 214133 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 214072 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 214011 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 213950 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 213889 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 213828 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 213767 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 213706 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 213645 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 213584 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 213523 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 213462 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 213401 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 213340 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 213279 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 213218 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 213157 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 213096 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 213035 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 212974 29 100.0 0 ............................. | A [212947] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235028-232742 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBT01000005.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2716 NODE_5_length_287671_cov_4.87841, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 235027 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 234966 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 234905 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 234844 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 234782 29 100.0 32 ............................. CCTTTCGTGTCGTCTGCCTCGCTGGTTACCGT 234721 29 100.0 32 ............................. CCTCGCATAAACGAGGCTCGCTCTGAATCTGG 234660 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 234599 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 234538 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 234477 29 100.0 32 ............................. TCTCGCAAACATCCTTCAGGCAAAACCACGGT 234416 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 234355 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 234294 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 234233 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 234172 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 234111 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 234050 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 233989 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 233928 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 233867 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 233806 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 233745 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 233684 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 233623 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 233562 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 233501 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 233440 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 233379 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 233318 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 233257 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 233196 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 233135 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 233074 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 233013 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 232952 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 232891 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 232830 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 232769 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 97.8 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //