Array 1 437140-437534 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042512.1 Serratia marcescens strain E28 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 437140 29 100.0 32 ............................. CGATGTTTAGCCGCAAGCAGGCCACCGACGAT 437201 29 100.0 32 ............................. GTGAGATAAAAACGCCGGTAGTTAACGCGGTC 437262 29 100.0 32 ............................. TGAACATGATTTCTTCTCCTGGGTCTTCGGGT 437323 29 96.6 32 ............................A CCCGCCGGGCATCGCTTTGTCTGAAATAAGGA 437384 29 100.0 32 ............................. CGCCTGCATCCGCCGCCACAACTGAGTTTTTG 437445 29 100.0 32 ............................. TACGACCTGACCGGGGGCGATTTTGCCCCTAA 437506 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : AGCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACCACGCCGATCTTCTACCTGTCCGGCACCATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATTCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAACGAAGTGTGGGGTGACGTGATGATGATGCTGGTGCTCGGCGTGGTCTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAGCGACGGGCGTAGGGGGGAGTATCTTGTTGTTATAGCGTGAAAATTCGGTGATTCTGCTTTATTGCTATAGATGGTTTTTTTATTTATTAGATTTCAAAGAGTTATGTGACTGCCCCGATGCTTAAATCGCGGTGAAATCTCGTAGATGTTGAAATCCATTTAATTCAATTAGATATATTTATA # Right flank : GGGCGCGACAACGAAGCCTACCGCGGTATTAGCGTGTTCCTTACGCAAGTGTGGGGAAGTAAACGCATCAAGAGATATAATAATTCAAATGAAATAATACCATGCTAATTATATTAAGTAGTATAAGGAGTTTTTGTCTTATTTAAGAAGCTATATGAAATTTAAATTAATATCATTGCGCTTTGATTTTACTGTTGTGAGCTTAATTGGCTTTTTGTGTTTTCGAATAAAATATAAGTACCTTTAGCCTGATGGAAGTGCTAAAGATAACAAGGCATTATTTATATCTAAACGGGATTGTTTATGGGAAGTGATATCCCTGACTATATGCGCTACTGGGGAAAAGCAAAAAGAGCTGACTTACCCGGAGAGAGTGACGATTACCACCTATTAGCTTATCACTGCCTGGATGTTGCTGCTTGCGGGTACCAGATGGTGATTGATAATCGTTTTCATGCCGCCGATATTCTGGCAGAGATAGGCTTCTCTCGTGCCGATGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 447132-448812 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042512.1 Serratia marcescens strain E28 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 447132 29 100.0 33 ............................. GTCAACGGCGTTGACCGGCTGGCCGAGCATCGC 447194 29 100.0 32 ............................. TAATAACGCCGCAGCGTTAGCGCTTGTTCAAT 447255 29 100.0 32 ............................. GGCCGGTGGAAATGCCGCAGGGCGCGACGATC 447316 29 100.0 32 ............................. GGCACATTGCCCATATCGCGCACGGTCGAGCG 447377 29 100.0 32 ............................. AAATGCTGCTCTATCTCGCCCGGGGATGGCTC 447438 29 100.0 32 ............................. GTCGAGAACTACGCCGAGCCGGTGCCGATTGA 447499 29 100.0 32 ............................. GGGCAATAATTTCTAACCCAATTCTGGGTAGC 447560 29 100.0 33 ............................. GATGCATGGGGCGCTCAAATCGGCGCTCTCCGC 447622 29 100.0 32 ............................. GTGGGTTAATCGTCTAAATAGGATTTGATGAT 447683 29 100.0 32 ............................. GTATGGTTCCGCTGATCATCCAGGTGCCAATC 447744 29 100.0 32 ............................. CCGACGCCGACACGCCTGTTTACCGATATTGA 447805 29 100.0 34 ............................. CTTACTACCGCCACTCATAATGCCCCCGTCATAC 447868 29 100.0 32 ............................. CTTTTCAAGCACCGCCGGCGAATGCAGGTCGA 447929 29 100.0 32 ............................. CCCTTCGCCGAGGGGCTTCGATAATGACAACC 447990 29 100.0 32 ............................. GGATCGCCGGCACGCATTGCAAGACCGAATTT 448051 29 100.0 32 ............................. GCATTGCAGCCAGCGGATTTCTGATTTCGTCG 448112 29 100.0 32 ............................. AGTACAACCGTAATCAGCTGCTTCTCTCTGGT 448173 29 100.0 32 ............................. TTTCTGGACCATAAATTTTAGCGGGATGTATC 448234 29 100.0 32 ............................. AATACTCGATTTTTTCCCCTGCTGTTCCCCGC 448295 29 100.0 32 ............................. GGAATGCCTCACTAAAGGACGTGCCGGCAGAG 448356 29 100.0 32 ............................. GCGTGAACGTCAAAGACAGCGCAGGACGTCTA 448417 29 100.0 32 ............................. CATCGACGATTTAGTTTCTATCGCCACTGCCA 448478 29 100.0 32 ............................. CGCCCCAGATTGAGGGGTTGTAGTTTGAGCCG 448539 29 100.0 32 ............................. GCCGCCTGCACTTTGTCAAATCGCGCCTTGCC 448600 29 100.0 32 ............................. AGAAATGATTACTGTTACAGCCTGGGCGGAAC 448661 29 100.0 32 ............................. TCCGTTAGGTCGATATGCTTGCAGCTGAAGTC 448722 29 96.6 32 ............C................ ATTATGTCCAGAAGTGGTTAGAGGAACAGGGA 448783 29 82.8 0 ............C............CGAT | C [448804] ========== ====== ====== ====== ============================= ================================== ================== 28 29 99.3 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TTGATTGAGGAGATTCTGGCTGCGGGGGAAATCGAACTCCCTAAACCTTTTGAAGATGCGCAGCCCCCTGCGATTCCTGAACCTGTTTCGTTAGGGGATGCGGGTCACAGGAGCCGTAACTGATGGGCATGCTGGTTGTCGTGACGGAAAACATCCCTCCCCGGCTACGAGGCCGGTTGGCCGTGTGGCTATTGGAGGTTCGGGCGGGGGTGTATGTCGGTAATACCTCGCGTAAAGTCCGTGAAATGATCTGGCATCAGGTTACTGCCTTGGCGGGGGAAGGTAATGCCGTTATGGCTTGGGCGATGAATAACGAGTCCGGTTTTGATTTTCAAACATGGGGAGAAAACCGACGTGAGCCGGTAGATCTCGATGGGTTAAGGCTGGTCTCTTTCTTCCCCATTGAAAATCAGTAAGTTATCGATCTTTAAAAATATGGAAAAGTTGGTGGAATTTTAGAGGCTTAAAAACTCAAGTTATAACAATTAGTTAATCTTAGA # Right flank : TTTTTATTGGACTATGTGCCAAAACAATCATTCATCAGTGGCTAAATACCGGCGGCATTTAAAAGTAAAACGCTCTCATATCACCCCACCAACTCCAGCCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCGGCGTGGTCGGTCAAGGCCAGCGGCTGCTCGCCGCGTTCGTTGGCGCGGAAGGCATCGATTTGCGCCAGTGTCTCGGCACCCTGCGGCGACAGCCGCACGATGTCCACCAGTCCCTGCATGCTCGGGAGCTCGTTGCCGAGGTTGTAGCAGTAGCCGCTCATGGTCTGGATGCCGTTGAGCACGAACACCTGCTGCTGTTCCTGCGAGCGCATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCATTCGTCCTTGCCGCGGTTTTCCGAGCGGGCGGTGAAGCAGCGCGCCGAGTAGGCCAGCGGCAGGTGGCCGTAGCTCAGCACCTCCACCTCGAAATCGTGGCGGAAGCCCAGCTCGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 452217-455526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042512.1 Serratia marcescens strain E28 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 452217 29 100.0 32 ............................. AGGTGAGCGGCCGCGTTGATTGGAACTCATTC 452278 29 100.0 33 ............................. TCATGCGGCTACGCGCGGCGGCCGCGTGTTTGC 452340 29 100.0 32 ............................. CGCAACGTGCGCAACCAGCAGCAGCCGGACGG 452401 29 100.0 33 ............................. GTTAATCTTGTCGAACCCTTGCGCGATGACATC 452463 29 100.0 32 ............................. TTCGACCAGCACCAGCCGCAGGACGTGGACAC 452524 29 100.0 32 ............................. CGGCCATGCTGTTACGCTCCCAGCTTAACGCC 452585 29 100.0 32 ............................. TCGCTGTCTAACGTGCCGCTGGATGGCGTGCT 452646 29 100.0 32 ............................. GTTGCCGAGCAGCTGGCCAGCATTGCGATCGA 452707 29 100.0 32 ............................. CCTTTACGATGTCGGCTTTCGATAAATTAGCG 452768 29 100.0 32 ............................. GAAATTGCCTTGTTCCTCGGCGCGTAGGCGGC 452829 29 100.0 32 ............................. GTATCTTTGCCGAACCTACCCTGCAAAAGTCG 452890 29 100.0 32 ............................. CATACTATGGGCCACTCGTTCGAAATGTCCGA 452951 29 100.0 32 ............................. CGGTCAATAAAAAAGAGGTCCGGCCGCTGACC 453012 29 100.0 32 ............................. CCCAGGTCTCCGCAAATACGTTATCCAGCCAG 453073 29 100.0 33 ............................. GTTTCCCCGTTCTGCGGGTAGATATTCACCTGC 453135 29 100.0 33 ............................. TTCGTGAGGGCGATCATGACGACCGCTGATTAC 453197 29 100.0 32 ............................. CTCCTGACGTTCTGCGTACTGGTGTTAGAAAA 453258 29 96.6 33 ............................A GCCGCAACGGCCGGCCGCTCACTGAAGCCGTAG 453320 29 100.0 32 ............................. CAAACTTTGTTAATTAGCCAGTGCTGCGACAG 453381 29 100.0 32 ............................. GATGGAAAATGGCGGCCAGTTGAACCCGGCGC 453442 29 100.0 32 ............................. GCCGAAGAAACGACGGCGGCGGGGATTGTGGC 453503 29 100.0 32 ............................. CCATCGACAAGCGCGCCGCGCAGCTACCAGAC 453564 29 100.0 32 ............................. CCGGGCTATTACGTCCAGCCATATATCAACGT 453625 29 100.0 32 ............................. CGAAACACCGCCGCAAATGACCAGCGAGGGGC 453686 29 100.0 32 ............................. GGCGAAATGTCCACGCCAACAACGAACCCGCG 453747 29 100.0 32 ............................. CGTCTGAACATCGTGATTTGCCTGGGTGAGAG 453808 29 100.0 32 ............................. GGTAAAAAAGTCCACCCGCGCAGTGTTGCGGC 453869 29 100.0 32 ............................. TGGGTGGATGACGTGGCGGCCGGTGAGATTGG 453930 29 100.0 32 ............................. ATGTTCGCATTGAGGTGTTCGACGGCCAGAAT 453991 29 100.0 32 ............................. TCGTTATCCGGATCGCCCATGTTGCACTTGAC 454052 29 100.0 32 ............................. TTGATGGATGTTGCATCGGGCGCTTTGGAGGA 454113 29 100.0 32 ............................. GCACGATTATCGCGCTATTACGGGCTGTTACA 454174 29 100.0 32 ............................. TTGAGCCAGCATTGCGGAGTTGGCTTGCAACT 454235 29 100.0 32 ............................. CTCACGTTAAAAACCGAGGATTACCAGGGGGC 454296 29 100.0 32 ............................. CGGCGACGTTATCAGGTGCGGCTGGCGCAGGC 454357 29 100.0 32 ............................. CTGGCGTTTCACATGACAGGCCGCGTGATGGT 454418 29 100.0 32 ............................. GAGGAAGAAGACGACGAAGCAGCCTTTACCGC 454479 29 96.6 32 A............................ CAATCGCAAGTGTCATCTGGCGAAAAGTCTAC 454540 29 100.0 32 ............................. GCCGGAGGATTCTCTTTGCTTCCAGGAAGTAC 454601 29 96.6 32 ............T................ GCCGCCAATTCTTTTTGCGTCAGGCCGAGTTG 454662 29 100.0 32 ............................. CGATCAGCGCCGGTGATGTTGACTACTACGAG 454723 29 100.0 32 ............................. AGGTGTTCGGGCCGACAGACAACTGGCAGCGC 454784 29 100.0 32 ............................. CGATTATGAGACCCTTGATAGGGCTATATAAA 454845 29 100.0 32 ............................. GTGTCACGCTGTACAACCCGCGCACCATCGAA 454906 29 79.3 12 .................CCA.T.G....C CATACGCGGCAA A [454923] Deletion [454948] 454948 29 100.0 32 ............................. TCCACGGCCAGGCGCTGGGTGTGCAGGCTGTT 455009 29 100.0 32 ............................. TCATAGGGCAGCATCTCCCCGCCTGCCGTACA 455070 29 100.0 33 ............................. GCAGGGGTGGATGATGGCGTTGCAGTCCTCCTC 455132 29 100.0 32 ............................. CCCATGGTCACGAACTCGGCCGCGATGCCATT 455193 29 100.0 32 ............................. AATTTATCCGGTCGATGCCGCCGGATGCGCGA 455254 29 100.0 32 ............................. GCGTCGTCAGGCTGACGAAAGATGGGCAGCGA 455315 29 100.0 32 ............................. TAGATCGCATTGCATCCGGCGTTATGACAATA 455376 29 100.0 32 ............................. CTGGCTACGCCGGTGCGGTTGCCGCCGGTTCA 455437 29 100.0 32 ............................. TTGATAAGATCGCTGTTGATATCGCACAGCAG 455498 29 82.8 0 ............T.........GG...AA | ========== ====== ====== ====== ============================= ================================= ================== 55 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGCCGCGTTCAGCCCGGTAGACGTGGCCGGCGAAGACCGACAATGGGTGGCGCTGGCGCCGCTGGCGGTAGACGAAAGCCTGCGCCGCCAGGGGCTGGCTGAAAAGCTGGTTTACGAAGGCTTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGATACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACTTGTTGATAATTAATTTTAATTTGGTGGAAAAGGATTTCACCGAAGTGTATTTTAAAATTTGATTATAAATCAAATGGTTGTGTTTTTTCAGAAGGCGAAAATATTTGGTAGGATTTAAGGTCTTTAAAAATACATTTTAATTCAACCATATACTCTAAGA # Right flank : ATTGAACGCTCGCAATCACATAGGCAGCTTTGAAATGCAGGGGGAGGAAAAAACCACGTAATGAAATCTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCTAGCGTCAGCTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGGTGCCAGTGGGGCAAGTCCATCATTGGGGTCCTGTGCAAGGGTAGAAACGACATCAGGCCGCCATAGCCAAGCGCGGTATCTCTATTTTGTCACGATTTAACGATGGATTTCACCACTGGCGGAACGGTTTGTTTATTCTGTCTTGACGATAAAGGGTTATTTTAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //