Array 1 107033-106393 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZW01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C2225 NODE_1_length_545981_cov_72.792382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107032 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106971 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106910 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106849 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106788 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106727 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106666 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106605 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106544 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106483 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106422 29 96.6 0 A............................ | A [106395] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124779-123165 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZW01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C2225 NODE_1_length_545981_cov_72.792382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124778 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 124717 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 124656 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 124595 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 124534 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 124473 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 124412 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 124351 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 124290 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 124229 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 124168 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124107 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124046 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 123985 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 123924 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 123863 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 123802 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 123741 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 123680 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 123619 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 123558 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 123497 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 123436 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 123375 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123314 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123253 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123192 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //