Array 1 29810-27912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEM010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-19 NODE_2_length_337750_cov_5.183349, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 29809 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 29748 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 29687 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 29626 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 29564 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 29503 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 29442 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 29381 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 29320 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 29259 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 29198 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 29137 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 29076 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 29015 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 28954 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 28893 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 28832 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 28771 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 28710 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 28649 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 28591 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 28530 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 28469 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 28408 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 28347 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 28286 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 28225 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 28164 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 28063 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 28002 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27941 29 93.1 0 A...........T................ | A [27914] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47708-46092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEM010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-19 NODE_2_length_337750_cov_5.183349, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47707 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 47645 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 47584 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 47523 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 47462 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 47401 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 47340 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 47279 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 47218 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 47157 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 47096 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 47035 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 46974 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 46913 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 46852 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 46791 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 46730 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 46669 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 46607 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 46546 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 46485 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 46424 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 46363 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 46302 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 46241 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 46180 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 46119 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //