Array 1 11464-11736 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000020.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11464 29 100.0 32 ............................. TCCACCGAGTCCGGGTGGGGCGCGTTCGGGCC 11525 29 100.0 32 ............................. GTGTTGGTGCCGCTTTTCCAGCTGTACGTCGC 11586 29 100.0 32 ............................. TCAAGGCAGTAGGGCTCCACGAACACGCCGGT 11647 29 100.0 32 ............................. AGCCGGTGGCGCTGGAGTTCGCACCCCTGGGC 11708 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 CTGAGCTCCGCGCACGCGGAGGTGGACCG # Left flank : CGGCACATCAGTCAGCCTGGAGCCGGTGTAGCCAGGTCCGAAAGAGCAGGTTTGTCCTACCTGTGGTTCTCAACTCAGGGCGGGCGGTGACGAAGTCAGGCGCTTACCAGGTGCTTCGCCGCCGGGCCACGCGCGCGGGTGTGGGACATGTGCTCCCGCATCGCTTACGGCATGACTTCTCGCATCGCTACCTGGACAACGGCGATGTCGAGGGGGAGCTGATGGAGCTCAACGGCTGGGATTCGCGGCAGATGCTGCGCCACTACGACTAGGCCATGGAGCGCTGTGCCTGAGGTCTGTTGAGTGGGGTGCTGACAGTGGTGGACTGGTGGTTGCTGTCAGTGCTTCCGTCAGCGCTCTTTGGAGCTGAGACGCCAGTATGAATTTCGTGCGTTCGTTGTGTGAGGATGGACTTCGGCTGAGCAGGGGCCAAGTGGGTGGCGCGCCTTCAACTTAGCTTGCGGCGAGATAACGGGTTCTGTTTCTGCAGGTCATTTGCT # Right flank : GACGGGGGCGCCGCCATGCCCGGCGACGCCCCCTGAGCTCCGCCCCGCTCACGGCGCGGAGCCATCCTGGAGAGTGATCAGAGGATCAGCATCGCGGTATGGGGAAGACGGTCCTTCCGCCTTCTCCGACGGCGACGGCCGGGACCCAGCCGAAATCGCTGGAGCTCAGGCGGATCCGGAACCACACATCGCTGCTGTAGCCGCGGTAGGTGATCTCCTGGTAGCGGCCCCAGCACTCGGCCTGATCGATGCCCGACCAGATGAGGAAAGAGACCTGGGGGCTGGTGTTGCGAGGCTGGGCACGCACAATGACCCGGGTGCCGGGGACCGGGGCGGCTGTGTAGTCCTGGGTCGTGTGCGCCACCTCCGCCGAGGCGCGGCCGGGCATCGCGATCGGACCGGCCGCCATGAGGGCGACCAAGGCCGTGACCAGGACGCTCCTCACCCCGGGGCGGGCCGTCTCACTGCGTGTCCCAGCACCGCGCACCCACGGGCAGGTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCTCCGCGCACGCGGAGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 17911-18062 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000021.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 17911 30 100.0 31 .............................. CCCAGCGCGGCCACCAGACCACCCAGGACGC 17972 30 96.7 31 .............................C GCGGGGACCACGTGCGGATGACCTCGGGCAG 18033 30 86.7 0 ....................C...C.TT.. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 94.5 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CGCCACACCAGGGTGGACCCGCACCATGTGGTCGCCCACGGGTCAGGCGCCGAGTTCACCGTTGGTGTGGCGGTGCCGGACCTGTGCCGGGCCTGGTTCGACGCGGACGACGATTCGGGGGAGAGCACGCTGTGGCTGTACGACACCGCGGGCTCGTGGGCGTCGGTGGACTACGTGCCAGGTGCCGGGGCATACGCGGTTGAGCAGGCTGGCCCCCGCAGTTTGTGGGCGGAGGTTGAGTCCGCCTGGAGGTGGTGGGAGACGCACGGGCGCCCTGACCGGAGCCTGTTCGAGGTCACTGTGGGTACTGAAGGCCAGCGAGTACGTCTCGTCCCTTCGGGTGACCGGATACAACCCACCGACCTTCCGAGCGGCCCATGACCGATCACCCAACCGTTACGGCCACGGTTCCGAGGGCTATGCGCTTCGTCCTTTTTGTCTCTTTTTTAAGAAGTTGGAAAAACGGCTGCTTGCCGCTGGTAAGTTCGCAGGTCTTTGGC # Right flank : GTTTTTTGCGAATAGAGGTAAGGTGGGGGCATGGTGAGTGCACTGCGTGAAAGAACCCTTCTCCCGCCGGACGACCGCTCGGAGCTGGCCAGGTTCGCGCGCGGATTGGCAGATCCCCAAGCGACTTCACGCGCCCGCCTGGTGGGCCCTGACGGCTCCGAGGTCGAGATCCCCAACGAGTTCTACGGTGTTCTGCGTGACGTGGTGTCCGCCCTCTCGCAGGGGCTTGCGATCTCTATCGCGCCTCACAACACGATGTTGACCACTCAGGAAGCTGCTGATCTCCTGAGTATCTCTCGCCCCACTTTGGTGCGCCTGCTGGATGACGGGGAAATCCCTCACAGCATGCGCGGCCGACACCGGCGGGTTCTGCTTCGTGATGTGCTGGCCTACCAGGAGAGCACCCGACGAGACCGTGAACAGGTGTTGGACCAGATGGCCGCGGAGGCGGAGGAAGACGGTTTGTACGAGGTTACTTCCACTCCTGAGAACACCAGGTG # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26644-26309 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000019.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 26643 30 100.0 31 .............................. CCGCCCGGTCTGGCCTGGAGACTCTGCGTCT 26582 30 100.0 31 .............................. CACCAGGACCGCACACCAGGAGCTACTCCGG 26521 30 100.0 31 .............................. GTCCGTGAACGGAACCGCCGGGCGGGTGGTG 26460 30 100.0 31 .............................. GCGCCGACCCCACCCGGGCCGACGCCGTCGA 26399 30 93.3 31 ............................TT CGGTCCGCCGTCCGCACTGCCGGACGCCCCC 26338 30 93.3 0 ...........A................A. | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 CTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GCTCCCAGCGACCGCCCGCCCCAGCGGCCGACGAGGGCGGCGACTGGCGGGAAGGTTCCACGTTGCTCGATCCGCGGCGCGTTGTCGGCGCCGACCCGGGTGCGCACGTCGCCATCGCGGGAATGCTCCCGGGCCTGTTCGGGCATGGTGCGAACGGCGAGGCGGGCACGTTCCAGCTCTGGCTCTGGGACGGCAACGGGTCGGCCGCACGCGTGGCCTACGATCCGCGGTACACGCGGTGCGGCGTCGAGCAGCAGGGGCCTCGGGCCCTGTGGGAGGAACTGGAGGGCGCCTATCTCACCTGGGTCGGCTGGGGCCAGCCCAGCCGGGCCCGGTTCGGGCTGACAGTCACCACCGAGGGCCAGCAGGTGTGGCTCGACGAGCCCACCCGCCTGGTAACGGGCCCGATGTGACCGCGTCTCGATGTGGGTGGAATGTCTGTTTCTCGGGAAGTTGGAAATTTGGCTGCTTGCCGCTGGTAAGTTCCCAGTTCAGCGAGT # Right flank : TGAGCAGGTTTTGTAGGAACTGAGAAGGGGCCGCCAGCGGAGAACGCTAGCGGCCCCTTTACGCGTGTTACCGGGAACGGACGCTGGTGAGGAACGCTGCCCACTCGGCTGAGGGCGCCTCCAGGTGACCGAGGTGACGGTTCTGTGTGTCACGGACGGCGGCCCCGGTGCCGGTTTCCGCGACCTCGACGCAGTTGCCGGAGGTGGGCTGACTGTAGCTCGACTTGCGGAAGTTGAGCGGTGTGGGAACTGAGGTCATGGTCTTCTACTCGATCATCTGTCGAAGGTGGTCGATCGTCTCGCCGGGACGGAGAGCGGCCAGGCGCAGGTGGTTCATCAGGTTTCTGTAGCGGGCGATCTCGTCGGGCTCCTCCAAGTAGATCCCATCGGTGTCCGTTTCCAAATAGACCACCGTGGGATCGACCGATTCGGGGAACTCCAGGATCACGAAGGGGCCTCCGCTTCCCGCGTTGAGCTGGGTCGCGCGCGTCACCTGGAGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28813-28163 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000019.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 28812 29 93.1 32 ...........G..T.............. TGGCCCGGCATGTACGTCGACAGTTTGGAGGA 28751 29 100.0 43 ............................. TGGATCGTTTCGCTCTTCATGACCTACCACCCGGTGGGGATTA 28679 29 89.7 32 .......C...G.C............... GGCACCGTGCGGCGGTGGCCGCATGAACCCCC 28618 29 89.7 32 .......C...G.............C... AGGAGTTTCGGGGGCGCTTGTTGGATCGGGTA 28557 29 93.1 32 .......C...G................. AAGGGCATCGTCGGGGTGTGGAACAAGGTGGC 28496 29 100.0 32 ............................. CTCACCGGCACCCAACTCATGGAGTACCTGGA 28435 29 86.2 32 .......CT..G..T.............. TGGCCCGGCATGTACGTCGACAGTTTGGAGGA 28374 29 100.0 32 ............................. GTGGGAGACCTGTGGGCCCGGCCATTCGTCCT 28313 29 96.6 32 ...........G................. GTGGAGATCCGCCCCGCGCCCCGGTGGCTGCC 28252 29 93.1 32 .......C...G................. TCGGCCGGGGTCAGGCGCCCGAAGGCGTGGGC 28191 29 86.2 0 .......C...GTG............... | ========== ====== ====== ====== ============================= =========================================== ================== 11 29 93.4 33 GTGCTCCTCGCACACGCGGGGATGGTCCC # Left flank : CCGGCCAGGACCCGCCACGGCTGGGAGGCGATGAGCCACCACAGGTAACGCCAGGGGCCCCGGGCGTCCGGTGTGCCGGGGGCGGGCACACGCGGACGCGGGCCGGTCGCGGCGGCGGACGTGCGGGGGGCGGGCGCCGCCTCGGTACCGGTCACGGGGCCTCCGTTCGGATCGTCGGATCAGCGGCTCTCGTTCTTTTCCCCTTCATGAAAACAGGACCACCGCCGCGCCGGAAGGCGCCTCCTACTTCTGTGGAAAACTCCGGGGAGTGCCGTTTTCCGTGTCCGTGAAACCTCTCAAATAACACCAGAAACACCAATAACAAAGCCCGAAGGGGAAGCAGTAGTGCCTCTCCGAGATTCCGTCCAGCTGGGCGAGTGTGCCGGTCCCGTGTGTGAAACCATGGGTTGGTTCGGACTTGGCTTTGTGGGCGGAATGTCTGTTTCTCGGGAAATTGGAAATTCGGTCTCTTGTCGCTGGTAAGTTCCCAGTTCAGTGAC # Right flank : ATGGAGATTTGCGACAGCCAGGCTGTGGTCGCCGACAGGGGAGGCGGCAGGCACGAACGGCAGGGAGCCAGCGCTACCCCGGCCCGGCACCGCGCAACCGGCGCTGTCCGAGACCGGCCGATTCCCATGGCGGGTAGTGGCAGGAGGGTTACCCTCTGTGTGACCTGTTCCCCTGTGGAAGGAACGCCATGGCCAAGCACGAGGGCCAGCCCAAGCCCAGCAGGCCGTTCGAGCCCGAACCGCCCTCGCCGGACTCCCCGACACCCGGCGGCGGCACCCGTGAGAAGCCCAAGGGATGACGAGCCCCGAGTCCCTCGCGGACGACCTGAGCCGGTCGGGGTACCTGACCGACCGGCGCTGGCACGCCGCCTTGGCCGCCGTCCCCCGAGAGCTGTTCATCCCGGCCGCCGCGCTGGCCGTGCCGGTGGACGGCACACCCCGGTACCCGATCGACCGTGACGCCGACCCCGACACCTGGCGCACCGCCGTGTACACCGACA # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCTCGCACACGCGGGGATGGTCCC # Alternate repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 33571-33358 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000019.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 33570 30 96.7 31 .............................T CGCGGTAGCTGTTGGGGGAGTCGTGGGCGGT 33509 30 100.0 31 .............................. TGGGCATCCGGTTCTGCCTCCGCGTCATGGG 33448 30 96.7 31 .............................C CGACCAGGTGCTCGGAGGCGACGCCGAGCTG 33387 30 73.3 0 ..G..................CG..CTTGA | ========== ====== ====== ====== ============================== =============================== ================== 4 30 91.7 31 GTTCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GGAGCCGGTCGGTGTCCTCCTGGCCGTACTCCGCGATCCGCTCCCGATCGAAGCCCTCCAGGGCCCGCCGGTAGTTCTCCCGCTTGTTGAGCACGGTGGACCAGGACAACCCGGCCTGCGCGCCCTCCAGGACGAGCATCTCGAACAGGTGCGCGTCGTCGCGGGAGGGCCTGCCCCACTCGTGGTCGTGGTAGGCCACCATCAGCTCGGAGGACCCCCGTGCCCAGGCACAGCGCTGGTCGGACATGGCAGCTCCTCGGGGCCGACGGCGGTGGTCGCCTCCATGGTGCCGCAGGTCGGTGACAGTCCGGGGGCGGCCTCCGGTCGGGGTGCGTTGCGCAGGTGTCTCGCTGGTCGCGGTCCTGGGCAATGGGGCGAGTGCGCCGGTCCTGTGTGTGAAACCATGGGGTGGTTCGGACTTGGCTTTGTGGGTGAAATGTCTGTTTCTCGGGAAGTTGGAAATTCGGCTGCTTGCCGCTGGTAAGTTTCCAGGTCAGTGA # Right flank : GTCGGAAGGAGCGTTCTTGACCGACACGGACGCTCCGCGTCCGGGAACCCTCGCAAGATCCCCGGCGAGAACTCTCTCTCGTCAGGCTCACGAAAAATTAACCTCCACCTTTCAGAGCGAGAGGTACGGTTCGCGCTATGGCAACTAGGAAGTACCTGGTAACCCTTCCGGAGGAACTAGCCGAAGCCATCCGCGCCGAGGTGGGTCCCGATGGGTTCAGCCGCTACGTCACTCAGGCCGTCGAGCGTCAGCACGAGCGCGACAGGCTCCACGAGTACGTTGAATGGTGGGAGTCCGAATACGGTGCGATCACCGATGAGGAACTCGCCGAGGCCGAGGCGGAGCACCGTGAGATCGAGCGCCGACATGCCGAACTGGTCCGGAAACACGATCCTCTTCGGAAGGCTGCTGAAGGAGCCCGTCACCGTCTTCACCTCCGACAAGGACGACATGGACCAACTGTGCGGTGACCGCGTGGTGGTCTTCAAGCTGTGAGTCGG # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10161-9581 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000026.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 10160 30 100.0 32 .............................. AGGCGATGCGCGACAACACCGCCACGCAGCTA 10098 30 96.7 31 .............................A TGGGGACTTCCCTTCGATCCTGGCCGGTCGC 10037 30 96.7 31 .............................T ACGGCTTCGAGCAGAGGGGCGAGCAGGACCA 9976 30 100.0 31 .............................. GGTTGGTGTACCCGAAGTCGATGGACAGGTA 9915 30 93.3 31 ............T................A CGACTCCGGCCGCGAGCATCCGGTCGTGCAG 9854 30 100.0 31 .............................. CCGTCCTCCACGCACAGTCCACCCCGAACAC 9793 30 96.7 31 .............................A CGGTCTGCGTAGCCACACGCCCCTTGGACGT 9732 30 100.0 31 .............................. CCCACGAGATCGCCGTCCTGGACAGCGGCGC 9671 30 96.7 31 .............................A GGGCCAGGACCCCGCCCGGCCACAGCGGGGC 9610 30 96.7 0 ..........................T... | ========== ====== ====== ====== ============================== ================================ ================== 10 30 97.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CGACGGAGCGTGCCAGGACCTGCGGATCCCTCCGGCCCCGATCGCCGACGCGTGGCTGGGCCCGGTGCTGTCCGGGCTCGCGCTGGCGCGCGAACGCCGCCGCCGGGACCCGGGGCGATGGCAGGCCGCGATCGACCAGAACCTGGCGGCCGCCCGCGAGCTGGTGGCCAGGCCCGGCCAGCCGACCGCCTACCAGCGCGGCGCGACCGGTTCCGAGGACTGAAGGGACGGCCGCGAGTACGGGCGCTATGGTCTGGAGGGGTTCCAGCAGACCAAGGGGCTGGTGCTCGGCGCCGATACCGTCGGCTCCGGTGGATACCGCTGCCGGAAGCGGTGCGGGCGGATGGCCGCTGCTGGGAGAGGAACGAAAGGGCGCACTTCTCGACCGGTATTCTGCGGCCATGGTGTTTCCAGGGCTGGGTGCTTCGTCTGCTTTGTCTGTTTCTCAAGAAGTTGGGAAAATGGCTGCTTGCCGCTGGTAAGTTCGCAGGTCGTTGACT # Right flank : ACGCTTCAGCCCGGACCCAGGACCTGTTGGGGTGCTCCCCGCGCACGCACCGACATACCACGGACTACTGCTGGCGGGGATTCTGGTCCCAGGGGCCACTCTGTGGTGGCTGCTGCTCGTAAGACTGCTGCGGGTACTGCTGCTGCGGGTATTGCTGGGGCGGGTAGTAGCCCTGGTTCATCTGGTGGTGCGGATGGTGGGTGTACTGCTGGGTGTGCCCCTGACCGGCGGCCTGGGCGTGGAACGCGAAGAACCACTGGGACACGGGCCGGTGCAGCAGGACCACTCCGGCGATGGCCAGGGGGAGCAGGAACAGCGCCCAGATGACGCTGTTTCCGCCGAGCAGCAGCATCGACTGCAGCACGATCTGGATGATGAGGACGACCTTGGCCATGGTCCGGGCCCAGGAACGGCCGCGGGTGACGGGGAACGCTGCCACTGCCATGAGCACGCCGATGACGGTGTGGGGCAGCGAGGCGCCGAACGCGTATCCGGGCTCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21510-20615 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000026.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 21509 30 96.7 31 ..............T............... GCTGAATCTCCCCGACGAAGTCCGCCACATC 21448 30 96.7 31 .............................T GGTGGCCCCTGGCCATCTCAACCTCGGTGGA 21387 30 100.0 31 .............................. TGGTCAGCGGCGCCGTCGGCTCCTGACCACC 21326 30 96.7 31 .............................G GCGAGAAACACGTCTCCGAGTGGCCGGAGCC 21265 30 96.7 31 .............................A ACGAGGTCCGAACCGACGGGGATTCTGTGCC 21204 30 96.7 31 .............................G TGAAGTACAGCTTGTGCAAGAGGCCCGTTTC 21143 30 96.7 31 .............................A CGCGGTAGATGCTGCCGGTGGCCTTGACCTC 21082 30 96.7 31 ............................T. AGCGGGGGCAGCGGCCGTGGTCGGCCAGGAT 21021 30 96.7 31 .............................T CCGACGACCGGGTGCCCAACCTCCTGTTCCT 20960 30 96.7 31 .............................A GGGCCGGGCACTCTAGGAGGCGTCGCGCTCC 20899 30 100.0 43 .............................. TGGGGTCACTGGCGCTGGAACGCCTACCCCGGGCTCGGAAGCA 20826 30 96.7 31 .............................T GCACCCGGATACGGGTGTCAGGGGTCGCGCC 20765 30 100.0 31 .............................. CTGCTGCGCGTGGCGTACCACGCCGCGAAGT 20704 30 96.7 31 ..............T............... CGTCCAACTCCTCCGAGGCGTAGGGCATCGC 20643 29 90.0 0 ..............T..........-...G | ========== ====== ====== ====== ============================== =========================================== ================== 15 30 96.9 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CGAGCCCGACCGGGTCGAGGACGTGGAGGTGTACCTGCGGGACTACGCGCGTCGGCAGCTCACGGTGGTGCTCACGCCGCGGCTGATGCGGTTGAGGCGGATGGTGATCGGTGAGGTCGCGCGGTTCCCGGAGTTGGCGCGGGTGCTGTACGAGTGCGGGCCGCAGCGGGCGATCGAGGGGCTGGCGGAGAGCTTCGCCCGACTGGGGGAGAGGGGGCTGCTGGCGGTGGAGGAGCCGCTGCGGGCGGCGTCCCACTTCAACTGGCTGGTGATGTCGGAGCCGGTGAACCGGGCGATGTTGCTGGGCGATGAGGCCATTCCGACGGAGGCGGAACTGTGCCAGCATGCGGAGGAGGGCGTGCGGGTGTTCCTCGCTGCTTATGGGTTCGGTGCTCGTTAGGGGAGTTGTGGGTCTTATGGGGTTTATGGGTCCGGTGTCTGTTTTTCGAGAAGTTGGAAATTCGGCTGCTTGTCGCTGGTAAGTTTGCAGGTCGTTGACT # Right flank : GGGCGACTCCAGGCCCACCGAGTGCAGCGTCAGGCGCTCTCCTCGCTCAGGGTGCCGCCGAAGCTCCTGCGCCGTTCCGCGTAGGTGTTGACGGCGCGCACCAGGTGGGGGCGGTCGAAGTCGGGCCAGAGGGCGTCCTCGAAGACGAGTTCGGCGTAGGCGGTGTGCCAGGGCAGGAAGTTGCTGGTGCGCTGCTCGCCGGCGGTCCTGATCAAGAGGTCCACGTCGGGCAGGGAGGGATCGTAGAGGTACCCGGCGAGGTCGGACTCTGTCATGCGCGTCGGGTCCAGCCGCCCCGAGAGCGCCTCGGCCGCCGCGTGTTTGACCGCGTCCACCATCTCCTGGCGGCCTCCGTAGTCCAGGCAGAACGTGAACGTCACCCCGCTGTTGCCCGACGTCAGCTCCTCGGCCCACTCCAGCCGTTCGCGGAGCGCCGCATCGACCCTGGTGCGGCGGCCGTACCAGCGCATCCGGACGCCCCGGGCGTGCAGGCGCCCGGT # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5469-6343 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000263.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================== ================== 5469 30 70.0 142 ...T......G...GAT........CG.TC TGTAGGTTTGGTCTTCTGGAGCTACAGCTTTTTGGTGGTTGGTGGGTTTTTGGTTCTTTTGGGTCCTATGGTTCTTGAGTCTGTTTCTGAAGAAGTTGGAAAAATGGCTGCTTGCCGCCGGTAAGTTTGCAGGTCGTTGACT G [5471] 5642 30 100.0 31 .............................. GGGCGGGGCCTTCCTGCCGGAAGATGGTTCG 5703 30 100.0 31 .............................. GCGACGAACGTTGCCGTTCTCGTCCCGCACC 5764 30 100.0 31 .............................. GCGACGAACGTTGCCGTTCTCGTCCCGCACC 5825 30 96.7 31 .............................A TGGCGACCATGGCCGAGGACGAGCAGCCGCT 5886 30 100.0 31 .............................. AGATCATCCACGGCGACACCGCCGTGAACAC 5947 30 96.7 31 .............................A TCGGGCAGACGACAGGGGCGTCCACTCCCCT 6008 30 96.7 31 .............................C GAGGTCGATTTGCGACCCGCCCGTGTTGCTA 6069 30 100.0 31 .............................. GCTTGTCCTCGCCCTTCTCGGTCGCGTCCGG 6130 30 96.7 31 .............................A GAAGGTCGACGACGCCGTCGACCGCAACGCC 6191 30 93.3 31 .........................C...T GCTTCGCCGCGTCGGTGCTGCTGGCGGAGAC 6252 30 86.7 31 ..............G..........C..AT GGCTTCCGTCGCGGGTGAACACCTTCCCGAA 6313 30 86.7 0 ..............T..........CTT.. | A [6339] ========== ====== ====== ====== ============================== ============================================================================================================================================== ================== 13 30 94.1 40 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : TTCCACCCCGGCCTGGTTGGCGTCGGCGTACAGGCGGGCCAGGTCCTGGCCGTAGCGGTCGACCAGCCCCGCGTAGACCAGCCCGTGCTGGGAGGTGACCTTGCCGGTGGTGTGCCCCGTCGTGCCCTGGCCCAGGCGCCCCGCCTCCAGCACCGCGACGGTGCCCGCACCGGCCCGCCGCGCCAGCAGCGCGGTGGTCAGTCCGACGATGCCGCCTCCCACCACCGCGACGTCGACCTCCACGTCCTGGTTCAGACGGGGAAACTCCGGCCGGTTCTCCACGACCGTCCACACGCTCCTGTGCTGCATTCTCTGCCCCTCCCGATCAGGTCCAGACGCCGTCGGCCCCCGTGCGACGGACAGCGCCTACACCAGCTACCCAGCGTTCCCGGTCGCTACCGCCGGAGTCCCTGGTCGGGGCATGGACCCGTGCCGCTTCCAGAGGCGGGGAGGGGTGTGCGATGGATTCGGGCTGGGTGAAAGGAGAGTGGTGGTGTGTG # Right flank : GGCGGCCACGGAAAACCGCTCGACGGCTTCGCGGCGACCTGACACAGTGGCGCACCATGACGGGTTCCCAACTTGTGACCGCCGAGGACGTGCGGCTCATGCAGGGGCTGGCGCAGCGCGTCACCGCGATCCGCCCGGACCTGGTGAACAGCGACGCCTCGTTCGGCGAGCTGGCCTGGAACTGGGGCAGGGGGCACGCCAGCGACGGCGCGACCTGGCCGCGTCGGCTGTGGTTCTCCGGCGGGGAACCGGTGGCGTGGGGCTGGGTCCGCCTTCCGCGCCGGGTGAGACTGAGCGACGGCTCGGTCAGGGACGTCACCGGCGCCTACCTGATGCACCAGGTCCACCCCGACCACGCCGGGCTGGTCGACGAGGTGATCGCCTGGTACGACGCCACGGCGGCGGGCCTCGAACGCACGGTGCTGCCCAGCGCCGCCGACGGGTTCGCCCTGGAAAGGTGGGCGGCGCACGGCTACCGGACCGACCCCGAATCGCTCGGC # Questionable array : NO Score: 4.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.84, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 12504-12970 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000054.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 12504 30 96.7 31 .............................C ATCCACACCACCCCGACCACGGTCGGGGCCG 12565 30 100.0 41 .............................. GTTCAACCACAAGGGAGAAGCCGCATGACGGTTCATGACAT 12636 30 96.7 31 .............................T TCTGCTGCACGGCGCAGAGATCGTCATCACC 12697 30 96.7 31 .............................C ACACGTGCGGGCCTCCTCTCGTGTACGGCGG 12758 30 96.7 31 .............................G CACTCCAGGGACGGGGGAACGCACTGGGGAA 12819 30 100.0 31 .............................. CCGACGGCGCCAGCTTCCCGCGCGAGACCGA 12880 30 96.7 31 .............................G TAGTTGTCGAGCGTGGTTGAACCACCAAGGG 12941 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ========================================= ================== 8 30 97.5 33 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : GAGGACACCGGGTGCTGCGGGTGCGCAGCCCCGCGGTTCCCAACGCGCTGGCCGCGGTGCTTCTGTGCCTGCGCGACGAGACCGGGGCGGTGCCCCACTGCTACTTCGCCTGGTCGGAGGGGAAGCCGATCCGCCAGGTGCTCCGTTTCCTCGTGTACGGGGAGGGGGAGACCGCGGCGTTCACCCGGGAGGTCCTGCGCGTGGTGGAGCCGGATACGCGGCGTCGCCCCGTGGTCCACGTCAGCTGAGCGGCGGGGCCCTCCCGCGCGGCGTTGTGTGAGGATGGAACCAGGAAGGCAGGGCCCACGCGGGTGGGTGTTCCGAATTCCGCGCGTACGAAGGCGAACCGCTTCCCGGGGTGGCTGGAGTGAGTTCTCGAAGAGGCGGTTTTTGTTTTTGGTGGTTTTCGGGCGATTTCGGGGTTGGTGGTGCCTGTGTCTTTTTCTGAAGAAGTTGGGAAATCGGCTGCTTGTCGCTGATAAGTTCGCAGGTCGTTGACT # Right flank : ACCAGGTTGCCGCCCTCAGCGACGACGGCACCCCCCAACGCCGCGCCGCGAGCTGTGCGCCGCGACGTTGAGGGGCGTGTGCTGACCGCTGCCGTCAGCTGTCCTGGCCGCCGACGGGGACGAAGTTGGCGTACTCCTCGATGCGCCTGATCCGGCCGGCGTCGTCGAAGCCGAAGTAGACCGCGGCGTGGACCTCGCCGCGCGTGCCGCTGGTGGTGGCAACGTGGATCACGTGCTGCTGGAGGACCTCGCCCGGCTGGGAGAGCTGGCGCAGGACGTCGTAGCGCATCGACTCGATGGAGGCCAGCAGCCCTTCCATACCGGCGATGTTCTCCTCGATGGACTGCTCGCCCTTGCCGTCGTTGTGCCAGACGGTGGCCGTCTCGGCGCACAGGCCCCGGGCGCTCTTCCAGTCGCGGTTCTCCAACGCGCGGAGGTATTTGATGGCCCTGTCCTTCAGGTCCTGGCTCATACGGGTCTTCCTTCGGTGTGAATGGGTT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3319-6699 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000003.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3319 29 100.0 32 ............................. ACGCAGTGGCGGACGAGACCGGCGCGGTCCAG 3380 29 100.0 32 ............................. TCGCGGCGCGCGGGTGGTGCCCGGCGGAGCCA 3441 29 100.0 32 ............................. GTATGCCTCGTCGGCCGCCTTCTTCGTGTCGT 3502 29 100.0 32 ............................. TAGCAGCATGACAGCAAAAAGCCCCCGGCCGG 3563 29 100.0 32 ............................. CCAGTTCTCCGAACCCCGGGTAATGGGAAGGA 3624 29 100.0 32 ............................. ACCCGAACACAGGACCGTCTCGACGAACTGGT 3685 29 100.0 32 ............................. GCGGCCTTTTCGTCGAGGCGGCTGGAGAACTC 3746 29 100.0 32 ............................. AAACTATGTAGCGCGTGTTGACAATGTTCGAG 3807 29 100.0 32 ............................. AACAGCTCACCGGTGTCCAGGTTCAGCCGCAA 3868 29 96.6 32 ............................T GCCCACCCCCGGGCGTGTCCGTCGAATTCCAG 3929 29 100.0 32 ............................. TACGCGCACTGGACGATCGAGGCCGACGCCGC 3990 29 100.0 32 ............................. GGCATGTCCATCAGCTTCTGGAACCCCGCGGC 4051 29 100.0 32 ............................. TGGGGCAGGGTGCCGAGCTTGCCCAGGTAGAC 4112 29 100.0 32 ............................. ACCCCGCACCGCGAGCGCACCTCTGGTGGTCT 4173 29 100.0 32 ............................. CTGACCATCGAAGACGTCGCCCGCGTGGAGCA 4234 29 100.0 32 ............................. CCGCTCATGGCGCTGGGCTCCGAGCACGACCA 4295 29 100.0 32 ............................. GAGCGGGGGCTGTCGGGCGTTAGCCCCGCCCG 4356 29 100.0 32 ............................. ACCGGACGGTATGTCCAGGTCGAGACGTTCGA 4417 29 100.0 32 ............................. GCGGGCGTGCCCGTGGAGTACTGGAAGGGAGC 4478 29 100.0 32 ............................. TCCCAGTCGGTAGGGGTGAACGTCTGCGCCTG 4539 29 100.0 32 ............................. CAGGCCATCTGGAACGCCCAGGGCCGACTGAA 4600 29 100.0 32 ............................. TGACCCGCGAGGACTACTGGTACCTGCCGCCG 4661 29 100.0 32 ............................. TGACCCGCGAGGACTACTGGTACCTGCCGCCG 4722 29 100.0 32 ............................. CTGTTTTCGAACGCCGTCACGAATGACGCGGT 4783 29 100.0 32 ............................. GAACGGGAAGGGCCCCGGACCGTTCGCGGTCC 4844 29 100.0 32 ............................. TCGTCGGCGGCGGCGTTTCGGTCTTCCATGAC 4905 29 100.0 31 ............................. CCCACTACGAGCACGATAGCGGGTGCGTGTG 4965 29 96.6 32 ............................T CCGCGGTGGCTAGTTGGCCAGGAACGCGACCA 5026 29 100.0 32 ............................. CTGCACACGTACACGCTCTGGCTGCTGGCGGA 5087 29 100.0 31 ............................. AACAGCGGCGACCCTTGGACGCGGTTGCTGC 5147 29 100.0 32 ............................. CGGGCCCCTCGCTGGCCGGTCCCGCCGCTCCC 5208 29 100.0 32 ............................. CGGAAGGGCGCGGAGACACAGAAGCGCGTCCG 5269 29 100.0 32 ............................. CGGCTCCCACCCCCCGCGCGCCTCGGCCACGT 5330 29 100.0 32 ............................. GGCGCTGCCGCCACCCCCGCCACCTTCGCCGC 5391 29 100.0 32 ............................. GCACGGACGCCACCCTCCTTCTTGGGATTGGG 5452 29 100.0 32 ............................. CGGTCCACCTTGTCATCCGGGCTCAACTCCGG 5513 29 100.0 31 ............................. CAAACCGTTCGCGGTTTTACAGCGTTCACTC 5573 29 100.0 31 ............................. TTGGACCCCCCCGAAAACCTCGGCCTGTTCG 5633 29 100.0 32 ............................. CGCCCACGACCCGAGAGGTTCGCGCCGTCATC 5694 29 100.0 32 ............................. CTGGGGCGCGCGCTGGGCTGCCTCCTCGGCCG 5755 29 100.0 32 ............................. CCGATGAACGCCGCTGACATCCTCGGCGAGGA 5816 29 100.0 32 ............................. GAGCCACGTACAGGCCGACACCCCGCGCCTCC 5877 29 100.0 32 ............................. AGGAGACCCCGATGCCCGGAATCACCGGCATG 5938 29 100.0 32 ............................. GGGGGCTAGAACGGGACCTTGTTGGGGTCCTC 5999 29 100.0 32 ............................. CTGGTGAGGTTGCCGCGCAGGGCGAGCACCGC 6060 29 100.0 32 ............................. ACGACGTGCGCGGGCTCCCAGCGGTGCCCATG 6121 29 100.0 32 ............................. GGGCGCCGGGCCTGGTCCCTGGACGACTATCT 6182 29 100.0 32 ............................. CCCCCGCGTCCCGAAGGGTGTCGTGCGGTCGG 6243 29 100.0 32 ............................. AGCCAGAGCCTCGGGGTGAACGGCGCGCAGTC 6304 29 100.0 32 ............................. CGGGCGCTGACCCCCAACGAGTTGCGTACGTT 6365 29 100.0 32 ............................. ATCCAGGGGTCGGGGTACCGGCGGAACGGCGT 6426 29 100.0 33 ............................. CGTGGGCCTCGCACTTGACCCGTGGCAGCAGCT 6488 29 100.0 32 ............................. ACGCGTGCCGTGTGCGGCTGCCCGCGTCCTCG 6549 29 100.0 32 ............................. CGGTTGGGGGGAGCCCACTCCCCGCCGCCCGA 6610 29 100.0 32 ............................. GGTGAGCACCTCGTGTTCGCCTGCTGGATTCC 6671 29 93.1 0 .C.......................G... | ========== ====== ====== ====== ============================= ================================= ================== 56 29 99.8 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GGGCGGCCGCGGAGTGGGCGCTCGGGAAGGTCGGCAAGCCATATGTGTGGGGCGGGGTAGGGCCTGACGGTTTCGACTGCTCGGGGCTGACCATGATGGCTTGGAGAGCCGCGGGGGTGTCGATCCCGCGGGTGACTACCGACCAGGTGAACACCGGGATCCGGGTTTCGCTCGACGCCCTGGTGCCAGGGGATCTGCTCTTCTACGACACCGGGAGCGGGCCCGCGCCCTCGCACGTGACGATGTACGTCGGCGACGGCCAGATGGTCAACGCTCCTCGTACGGGTACGACCATCCGTGTGGAACCGGTGGAGGGGCCGTACTACTCCGCTCGCTTCATGTCTGCGGTTCGCCCCGGCTGAAGGGCTTGTTCGGATGCTGGAGCGAATCCTTGGCTCCTGTCGTGTGAGGATGGACGCATGGGGATCACGAGGGTGGTCGGCATGTCCCAGAGAAGATTGCGGGGAGATAACGGCCCGCGTCTTCGCAGGTCGTTAAGC # Right flank : GGACTGCGCAGTTGTCGCTCTGCCGAGCACTGGAGTGAGACCCACGCACATTCCGAACCCAGATGTCGTCGTCGGCTTTACCTCCGGTGAGGCATCCCCTGTCAGGGGTGTCGTCACCGACCAGCCATCCGGACAGACGCGGACGGCCCCGCCCGGCAGGCAGGGCCGTCTCCTTCACAGTCCCTGGAAGGGATCCTCCTCAGGTGTGGGCGTCTCGTCCCCGACCTGGCGCTCCGGAGCCTCGGGCAGCCACTCCGGGTCCTCCTCCTCATCGACCTGCGCCGTCAGCCGGATCAGCTGGAGGCCGTCGAAGTCCAGCACCTGCCGTCGCCGCTCGCCCGCCGTGAGAACGACGTAACCCTGCTCGTTGTCGGCGGTGTGCAGGCACACCGCGGCGCCGTCTCCCACCGACGCGCTCACGGCGGACCACAGCTCCTGACGCACCCGAGCGTTCATCGTGCCGACGTACAGGCCCGCGTCAGGTTCGGTCATCCACCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 16412-19735 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000003.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16412 29 100.0 33 ............................. TGCGTGGCCGCGGCCGGGCGGCCGCCGGTCAGG 16474 29 100.0 32 ............................. GAGGCTGGACCGCGACCTTCCCCGGTGCCGTT 16535 29 100.0 32 ............................. AGGGCCCCGAGTTGGTGCGGTTCGAGTCGCCG 16596 29 100.0 32 ............................. GTCCACAGGCACTCGCGGCACTGGGTGTCGTC 16657 29 100.0 32 ............................. GTGGAGGCCACCCACCCCTACGACCATCTGTG 16718 29 100.0 32 ............................. AGTGGTGACCCCATCGTGACCACCGTCGCCAA 16779 29 100.0 32 ............................. CCCGCGACCTGCTCACCGGACAGTACGGCCAG 16840 29 100.0 32 ............................. GTTCGCCGGATCGCGGCGGATCCGGCGTCGCC 16901 29 100.0 31 ............................. GCACGCTGGTCGCTGATTATGGCCGTGATTG 16961 29 100.0 32 ............................. CCCCGGCACGTGACGATCGTGGGGGTGTCCGC 17022 29 96.6 32 ............................T GGCAGACCGTGACCGATGGCGGATTGTCCCGC 17083 29 100.0 32 ............................. AACGTCGGCGAGCACGCGCCATACGAACCACG 17144 29 100.0 32 ............................. ACCGGTGGGCGGGGGTTCCGGGGCGGGCGGCG 17205 29 100.0 32 ............................. TGGGCTGACCAGGTGTGCGACGCCTGCATAGA 17266 29 100.0 32 ............................. CCCCCGCCCGAGGAGGGCGGGGGCTTCCGGAA 17327 29 100.0 32 ............................. GGCATAGGGCGCACGCCCAGGGTGGCGCTCCG 17388 29 100.0 32 ............................. TGGTCATGGCGTCATCTCCTGACAGTGGATTA 17449 29 96.6 32 ............................T GCCGTCGACGTGGCTGGGGACACCGTTTCCGC 17510 29 100.0 32 ............................. ACGTGCCGGTCCGCCGCGCCCGCCGACCTGTC 17571 29 100.0 32 ............................. ACGGAGCCCGCCCCGCGGTGCGTCGTGGTGTG 17632 29 100.0 32 ............................. ACCGCGTCGTCCATCGCGAGCAGCGTCCGTAA 17693 29 100.0 32 ............................. CGGCGTGCGGGGGAAGTGCGCCACGGTCTCGG 17754 29 100.0 32 ............................. ATCGCGGGGGTGCCCGCCGGGTTCACCGATGA 17815 29 100.0 32 ............................. CGGAGCACACTGGCGGTGGGCCAGAAGCGTTC 17876 29 100.0 32 ............................. CGCTGGGCGAGCGCCGGTTCCGCCTCCAATCG 17937 29 100.0 32 ............................. AGTTCGATGAGGCCTCGGTCGATGGCCGCTAT 17998 29 100.0 32 ............................. TTGGAGGAAGCGGCCCAGTTGAGCGGCACCGA 18059 29 100.0 32 ............................. GCCCGCAACCGGTCCCGCACCACGAACCTGTC 18120 29 100.0 32 ............................. TCGAGCGCGCCGTAGATGGCGGGCATCTTCGC 18181 29 100.0 32 ............................. CGGCTGGACGTCACCTACGAATCCCAGGTGTA 18242 29 100.0 32 ............................. CCGCTGTTGGCCCAGGCCGGGGTGCGTACCGC 18303 29 100.0 32 ............................. TGGTGCACGTGTCCCCCCGGGCACTATGCGTG 18364 29 100.0 33 ............................. ACGCGCCGAGGGACTCGTCTCCCCGAGCCCTTC 18426 29 100.0 32 ............................. GCGTCGGTGGTGGTGCGGTGGGCGTTGGGGTG 18487 29 100.0 32 ............................. CGCTGTTCGTCGGCACCGGCCGGTCGGTGCTG 18548 29 100.0 32 ............................. ATGCAACCCGGATGATCGAGGCGCCCTACACG 18609 29 100.0 32 ............................. CGCTGCGGATCGTGGGGACCAACCGGTCGCGT 18670 29 100.0 32 ............................. GTGAGGTGGCCGATGGTGTCGTGGTCGCGGCT 18731 29 100.0 32 ............................. TCACCCTTGACCTGCACAGTTCCCAGTGTCAT 18792 29 100.0 32 ............................. ACCGGCTCCACACCCTCGAAACCGTTCTGGCG 18853 29 100.0 32 ............................. GTCGACGGCGCGTCCATGCCGTGCCCCGGCGG 18914 29 100.0 32 ............................. CGGGCCCTGTGGTGGCCCGGAGCACCGCACCC 18975 29 100.0 32 ............................. TGCACGAGGACCTGGTCAGGCGCGGCGGGTTG 19036 29 100.0 32 ............................. ACGGTCGGCGACATCACCGAGGAACAGCACAT 19097 29 96.6 32 ...............T............. GCGGAGGCGGCTCTTACCTTCAAGGTGACCGG 19158 29 100.0 32 ............................. GCGGGGTAGATGCCTGCCTCAAGCGGGTTGAC 19219 29 100.0 32 ............................. GTTCGTGTCGCACGTGACCTTGACCAGGTGGC 19280 29 96.6 32 ..........T.................. GCGGCCGACGCCCCGACCGCCCCGGCTGTCCC 19341 29 96.6 32 ...........................T. CCTCCAGCACCGACAGCATGTGCCCGGAGCAC 19402 29 96.6 32 ..........T.................. GACGAAGGGCCCGGGACTCACCCTGCCACGAT 19463 29 100.0 32 ............................. GCACTGCGCTCGAACGCCACACGGCAGCCGCG 19524 29 96.6 32 ..........T.................. GTCATCATGGTGCCCATCGGCAAGGCGGCCGC 19585 29 100.0 32 ............................. GCCCTACGCGGCAGCCTGCGCAACGGCCGTGT 19646 29 89.7 32 ................T....G..A.... CCCGGGGTGTCCGCACTTCAGATGCTCGCCCT 19707 29 82.8 0 .........A......T......C.G..A | ========== ====== ====== ====== ============================= ================================= ================== 55 29 99.1 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CCCGGGATGCGGGTCATCGGGGTAGGCCGACAGGTCGAGGGGGACCTGTTCCTGGAACTCGCGGACGAGCTTGCCGATGTCGTGGCAGCCGGCCCAGAAAGCGACTAGCGCGCGGGCATGGTGTTCGTCTGTACCCAAGCCCGCAGCAATTCGGCGCTTCAACCCGCTGGAGAGAGTGAGGTCCCATAGGACGAGGGCGGCCGCAGTGGCGTCGAGGGCGTGGAGGACGTAGGGGTACCGGTGACCGCGGAGGTGGCGTTCTTTGGCCCAGAGGCAGAGGTCGATGTGGGTCGGGTCCTCGGCGGGATCGGGGAGGTCGGGAGGAACAGCGGACATCCTGGTGTGCTCCAGCGGTCATGAGAGCATGGTGTGAGGTGAAGTTAGCGCTGGGGCGGGACTTTTCGCGGGGTTTTTGAGGGGATGGCCGGGACCGGCCATTTCTGAACTGGCCAGTAGGTCTCGCGGAGATAACGCCCCGCGTTGTTGCAGTTCATTAAGCG # Right flank : ACGACAGGGAAACGTTTCGTACCGGTTTTATCGAAGACCCTGGTACGTACCGGCTTCGGTGAGCAAAGGCATACCTTCAGCCGCGAGCGGGTCCATACCCCTCCTCATCTTGGCTCACCAGCATCCCCGCCGCTAGCCCTGAGCCGGAAACGGCCACATCCCATTTTCCCCTGACACACCGGGCTTGGCGTTGCTACCGTGGCTCCGCCCGGCGACGGCCTTCCCGCATCCGACAACCGGACTCCTGCTATCCATTCGCCCTACGAGAGTGCCCGTGAGGAGACTGTGTGCCCACCCAGTGGACACTCACCCCCTACGCCCCCACTACCTTCCACGGTTCCTCCCTCCCATTTGCACGCTCTGGTCTGCTATCTGCTGGAGACCCCTACCAGCGACCACACCGCCTAGCCCAAACCCTTCACCGCCGCCCTGCTTCCGACTGCCGGGGCTACCGCGCTCGGTGTGGGTCTGGTAGTGGCTTGGCTGGACGAGCCCACCTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 30459-32684 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000003.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30459 29 100.0 32 ............................. CGGCGTGCGTCATGGGTCAGGTCCTCTCGATG 30520 29 100.0 32 ............................. TTCACCACCCTCACGTCGCGCCGCCTCCAGGG 30581 29 100.0 32 ............................. CATAGGGCACACCACGCCCTTGGTCACGAAAA 30642 29 100.0 32 ............................. CCAGCCGTCGCCTCCTGCTCGCGGAATCGTGG 30703 29 96.6 32 ............................T GCGGCGGTGTCGTTCTCAGTCATGGGTGCGTC 30764 29 100.0 32 ............................. CCCACGAGCGGCCCCTACGCCGAGCTGACGCG 30825 29 100.0 32 ............................. GGGTCGGGTGCGCGAAAGGCGTTCCCGGTCCG 30886 29 100.0 32 ............................. ACACCCATGTCGTCGGTGCGGCAGGCGGAGGT 30947 29 100.0 32 ............................. ACGGTGCTCTCCACGAGCTGGTAGCCCGTGGT 31008 29 100.0 32 ............................. GCGGCCACCCCCGCCGCGGCGTCCAGGAGAGC 31069 29 100.0 32 ............................. GGTGCGTCCGGCTCTGCGGTGGCGTCCCTCGG 31130 29 100.0 32 ............................. CGCTGACCGTTCCGGCCGACACGGCCGACGTT 31191 29 100.0 32 ............................. GTGTGGGATCCGCCAGGCAAACGCATCGTGTG 31252 29 100.0 32 ............................. CCGGGAGCGGGGATGGGCACCCACAGGGGGCG 31313 29 100.0 32 ............................. GCCTCGTCCACCTCGTTGGAGTTGGTGGCTCC 31374 29 100.0 32 ............................. GTGTGGGATCCGCCAGGCAAACGCATCGTGTG 31435 29 100.0 32 ............................. GTGCCCGGCTGGGGCAAGAGCAACGACCCCCG 31496 29 100.0 32 ............................. AGCACGACCGTGACACCCAGAACCCTTGACCG 31557 29 100.0 32 ............................. CGACCACCCCCGGGCATGCGACAGCCCCGAGA 31618 29 100.0 32 ............................. CCGCGTCCGGGTTCTCCTCGTGGATGACGCTG 31679 29 100.0 32 ............................. GGGTCGCCCGGCCCGGCCCACCCGAGCGGCCG 31740 29 100.0 32 ............................. CTTGCCGACGCGGAGCCGATTCTTACCGCGCA 31801 29 100.0 32 ............................. GTTCTCGGCCACCGGGACTTCACCTCAACCTC 31862 29 100.0 32 ............................. AACTCCGCCCACTCGCCGTCTTCCTGGCTGAT 31923 29 100.0 32 ............................. GTGTGCGGCTTCACCCCCGGCAGCATGGGGTC 31984 29 100.0 32 ............................. CGTCTCCTCTAGCTCGGCGGTGTCCTGCTCCT 32045 29 100.0 32 ............................. TTCAGCGTGAATGATCCGGATTCTGCTGGCGA 32106 29 100.0 32 ............................. GTGTGCCCTTCCTGGACGATGCGCAGGTAGTG 32167 29 96.6 32 ..........T.................. GAACTCGCCGCGGGGATCAACGCATGGCTCGT 32228 29 96.6 32 ............................T TCGGACAGCTTGTGCACGTTGCCGGTGCGCTC 32289 29 100.0 33 ............................. CCCCTCCAGGTGTGGCGGCTGACGGCGGCTGGC 32351 29 96.6 32 ...G......................... GCACTTCTACGGCTAGCGAGTCGTCCGGGAGT 32412 29 100.0 32 ............................. TCGAGCTAGCCATGATCGACGTCTCACACCGG 32473 29 100.0 32 ............................. GCGGTTTTGGGTGTCCATGAACCACCCCGGGG 32534 29 96.6 32 ............................T TGTATGCGAGTTCCACGTCCATTCCGTGGTCC 32595 29 100.0 32 ............................. GCTTGATGCGCCAGCGGGCCACGCTCTCTATC 32656 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.4 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GTGGACGACACCGACGTGCGTGACCGGGTAGGCGCGTGGCTCAAGCTGACACGTATACCCATCGGACCTGGTTCTGATCAGGAGTGAGCGGACTTAGCAACGGGCGTGTACAGGTCGGTACGCGGAGCCTGAAAGCCCGGTTTGCGCATAAGGCGTTGTTGCGGTTAGAAGTCGCGTTTGAGATGGGTGGATGCATTCTCGTAGGCGCGGCAGGCGCGCTCTCCGGGGGCGCAGCAAGGGGCTACACCGCTTCCAGTTGCCCTCTTCCGGCTGCCCCTGCCGTTTCGCCTGCTGTGACAGCAGCGCTGTACTGCGGCGGTTCGAACCGGGGGAGCAGGTGCCGGTGTGCCTGACTGCTGGGCAGGACCTGCTCGGCCAATGGTGTGAGGTGAAGTTAGCGTTGGGTGGTGCTTTACGCGGGATGGTCGAGGTTGGTCATTTCTGGTCTGGCTCGTAGGTCTCGTGGAGATAACGCCCCGCGTTGTCGCAGGTCGTTAAGC # Right flank : GTACCGCAACCTCTTCGGGCCCACCGAGGTCGTCGCCGCACTGTTCTTCCTGGAGGAAGCGGTCTCGGTCACGGATAGGCCGTCCACACCGGTCCGGTAAAAACCTCCGGTGAACAGGGCGGTCACCGTGGCAGACTCAAACCATCCCCGGGACTCAGACCAGGGATGACCAGCGACAAAAGGTAAGGAATGTTGTGACAGGGGACATCGGAGACGATCTCGGGCAGCGTGTCGTCGCTGCCGTCAGCGCCGCGTTCGACGTGGCCTGCACGGTCGAGCAGGCGGTGGTCCGACCCTCCCAGCGCGAGGGCGTGGACTACCAGGTCAACGCCGCGATGGCGCTGGCCAAGACCCTGCGACGACGTTCCCGCGAGGTCGCCGACGAGATCGTCACTCACCTCAACTTGGGCGACATGGCCCAGAGTGTGGAGGTCGCCGGCCCCGGGTTCATCAACATCACCCTCTCCGACATCTGGCTGCAAGAGCGCGCCGCGGCACTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 4 35294-37701 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000003.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35294 29 100.0 32 ............................. ACGAGCAGCGACCCCGTCGTGGTGTTCGACAA 35355 29 100.0 32 ............................. AACCCGGCGAACGCCGCCGCACCACTCCCCGC 35416 29 100.0 32 ............................. GAAACCGGTCAATGGCCGATCGAGATCGCTAC 35477 29 100.0 32 ............................. ACTGATAGCCATGCGGCTCCTATTCGGGAACT 35538 29 100.0 32 ............................. AAATGGCGCCGAATTGGTTTATGGAATGGCTG 35599 29 100.0 32 ............................. TCCTCGAGCCGGGGGCGCTCCGGCGCGCGTTC 35660 29 100.0 32 ............................. AGCACCTTGGTGGGGTTGAGGCCCTCCTTGGT 35721 29 100.0 32 ............................. ATCCACCACGGGATCCACACGAACAGCCACAG 35782 29 100.0 32 ............................. GCCAGGGGCCAGCTCTGGCCGTCCGCGAGGCA 35843 29 100.0 32 ............................. CAGCTCCAGCAGCGAGATGCCGAAATGGTTGG 35904 29 100.0 31 ............................. CACACGCACACATGGGCGCGCGACGTGGTGC 35964 29 100.0 32 ............................. TACATGCTGTGGGGCGTCAACGGCCAGGGAGA 36025 29 100.0 32 ............................. CGGCGCCGCGAACGCATCTGACCGTCACCACG 36086 29 100.0 32 ............................. TGGCCCTGGGGATCGAAGTCGACCACCAGCAC 36147 29 100.0 32 ............................. GGGAGGACGACGGTGAGGTGGGCGCACAGAGC 36208 29 100.0 32 ............................. CTGGTGGTGGGCATCCAGGAATCGATCCGGTT 36269 29 100.0 32 ............................. GCCGTGTGCGACACCGCGGTGCGCTGGACGAC 36330 29 100.0 32 ............................. TGGTGCGCCCCGCCAGTCCTTACCTGGCGGGG 36391 29 100.0 32 ............................. CGGCGGGGACGTCGGTCCTCGTCGGGGCGGTC 36452 29 100.0 32 ............................. CCCACCGGCGGCTGCCCGCTGCGGCGGCCGCA 36513 29 100.0 32 ............................. TACACCAGGCGGCCGGTGTCGATCTCGTAGGC 36574 29 100.0 32 ............................. CAGTCGACGAGGCCGCGCGCGCGGCCGGATAC 36635 29 100.0 32 ............................. ACACGATGAGCACGAGGCCGTTGTACGAGTTC 36696 29 100.0 32 ............................. CAGGCCGCCCGGGGCGTCAAAGAGGACGACAA 36757 29 100.0 32 ............................. GTCGACGCGCTCGCCGTTGCCGAGAACGATGC 36818 29 100.0 32 ............................. CGGTGTACCCGGGGGTCGACGCGGGCCCGATG 36879 29 100.0 32 ............................. ACCCCCGCGCGATCCGCCAAGAACACCGCAGG 36940 29 100.0 32 ............................. ACCTCGGCGGATCCGAACTCGTCCCCGACATC 37001 29 100.0 32 ............................. GTGTTCAGGCGGCGGGTGCGTGGAGTTCGCGG 37062 29 100.0 32 ............................. GTGTTCAGGCGGCGGGTGCGTGGAGTTCGCGG 37123 29 100.0 32 ............................. CGCGCGATCGAGTCGGGCTACCGCGAACTCAG 37184 29 100.0 32 ............................. TTCTCGGAATCACCCCGACTACCCCGACTACT 37245 29 100.0 32 ............................. GGCATGTCTGCCGGGTCCGTGGTCCACGGCGG 37306 29 100.0 33 ............................. TCGGGGTCGGTGTCGGTGGCGCGCTCCCACAGC 37368 29 100.0 32 ............................. CAGGTCGACTGGGCCCAGCGCATCCGCGCCGA 37429 29 100.0 32 ............................. CAGGTCGACTGGGCCCAGCGCATCCGCGCCGA 37490 29 100.0 32 ............................. GTCAGGGGGAACATCACCAACGTCGTGCGCGG 37551 29 100.0 32 ............................. GGGACCAGGTACCCACCGGCGTTGTCCGTGAG 37612 29 89.7 32 .................C...G...G... CGAGGCGAGTCCGTCGGGCAGGCTGCGGTGCG 37673 29 82.8 0 ......G.....T...T........G.T. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.3 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : TCCTCCCCAGCCATAAGCACCAGTGGTTCAACGGTGAGCTTGCCTAATGCAGGTCCGCATGAGAGGGCACCTACGTTCTCATCGTCAGGTCGACTCCGGCTTTTTCTGCGGGCCGCCCACACCCTCATAACCACCCGACGCTTGGCCTCTCACGTGGGGGTCAACGCCATCGCCTCTGCCTTCTGCTGTCTCCACTAGGTCGCGACGCAACCCACCTACGCGAACTGCTGCCAACGCGCGACCGTGGAGGGCGTACGGGTGTCGATGGCTGCGGAGGTGGCGTTCTTTGGTCCTGAGGCAGATGTTGATGTGGGTTGAGTCCTCGGCGAGATAGGGGATCGGCGGTTGTTCTGGTGGGCTCCAGCGGTCATGAGAGCATGCTGTGAGGTGAAGTTAGCGTTGGGGCGGTGCTTTTCGCAGGATGGTCGAGGTTGGTCATTTCTGGTCTGGCTCGTAGGTCTCGTGGAGATAACGCCCCGCGTTGTTGCAGGTCGTTAAGC # Right flank : GCGGTTCTCCGCGAACGACTTGCCCTCATGAGCTGGTTGAGTAACTCCGTTAGCGGGAGAGCCGCGGTCTGCAGAGCGCCGAATGCCACTTCGCACTGACGTAGCTTGTCGCGCTCGCCACTGTCGATGACCGTCCCACCGGTCATGTACTCGGCGAACACCAGCGTGGACTTGCCCGGGAAGCCGTAGGTCTGGAAGGGTCCGTCCTTGTCGGAGGCGGTGGTGTGTACCGCAACCGCCTCTACCGCCCGACGAGACCGGTGGCGGTTACCTGTAGGTGCTCCAGCGTGTGGTGGTGTCGCCGTGCTGCAGGGTGTCGAGTCGGTGGCGCCATTGGGAGCGCAGGCCGGGGTTGGTGTTCAGGACCGGTAGGACGCTGGTGACGAGCTTGAGTTCGCGGACCTGGCGTAGGACGGGGAACCCGGGCCAGCCCAGCACGTCGTAGCCGTACTCCTCGGCGAGCGGGGTGTGGGGATCCTGGGCATAGTCCATGCGGACCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 17882-18473 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000007.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================== ================== 17882 28 79.3 106 ...T....G.....A.T......-..G.. CCGTCGTGCGCTGTGTGAGGATGTACGTCGAAGCCGGGAGTGCTCAGCATGTCCAGGGCCAAGGTTGCGGCGAGATAACGGCCCGCGTTGTTGCAGGTCGTTAAGC G,T [17895,17897] 18018 29 100.0 32 ............................. GACACCCGCATCGCCGAGCTGGAGGCCGACCT 18079 29 100.0 32 ............................. CTGCTGGAGAGCAAGGACGCCGCGGTCCGCGC 18140 29 100.0 32 ............................. GGCGGCCGAGGCCGAGGGCAGGCCGGAGGCGG 18201 29 100.0 32 ............................. GCGGACAGCATGACCGGCGAGGGCGCGGCCCA 18262 29 100.0 32 ............................. TCCACGGCCGACCGGATCAGGGATGCGCTGCT 18323 29 100.0 32 ............................. GCAGGCGGCCCGGACAAGGCCGCGAGCCTGTT 18384 29 96.6 32 ........................A.... GAGTAGGCCATCTGGGTGCGGGCGACGTCGGC 18445 29 96.6 0 .....................G....... | ========== ====== ====== ====== ============================= ========================================================================================================== ================== 9 29 96.9 41 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CGCCCGGGCGACCTTCCCTTCCCCGGCCTCGGGCGGAAACCGGCTCCGGCTGCCGACCTTCCCGTCGGATCGGTGGAACTCATCGGTTCGGGGATGATGACCCAGCTGATGTTGATGATGCCCGGGGTCCGTCTGGGAACAGGGCTGCGGCCCTTCCGGGGTGAGCCCGGCCGGATCGTGTGGATGGGTGTTGGGCAGGCGTGGGCGTACGTGTGGCCGGACGGCACCGTCACCGGCGGCGGTGATCGTGCCTTGGGTGAGGAGTTGGGGCACGCCTACCGGCTGCTGCGGGGCGCCGGGCTCCCGGGTCTGGAGAGCTTTGACCTGAAAGCCGTCACCGGTCAGGATTCCTGCCGGGTGGTGTGTGCGGCCCTGGGACAGCACTGGGATCACCCCGTATCGCCCTGACTTTCTCGTCTTGCTCATCCTGCTCGTGCTGCTCTTCAGGGCTGTTCCTCCAGGCCGGGGGCCTGCGACCGCAGCCCAGGCATGGAACGCCT # Right flank : GGTGACCGTGAGTGGCCACTGTGCGTTCGTGGCGAAGCGTGGTGTCCTCGGGGCGGCGGACGCAGAGAACCCCACCTCCCAAGAGAGAGGTGGGGTTTGTTCGCTGTGCCCGAGGTCAGACGGTGGGGTTCTCCGTCATGCCGAGCTGACCGAGGTCGAGGCGCTCGGCGCGGCGCGCGAGCAGGTACAGGTGCCCCGATGCCCGGTCCATCTCGCGGATGAGCGCGAACCCCTGTCCCTGGTAGTACTTCGCCAGCTCGGGGAAGAAGCACCCTTGCCGCACCCACTGGCGGCCCTCTCGCGCCGCCCAGTCCACCGCCCACAGGTCGATCAGGGTGCCCGGCTTGTGCTCCCGGTAGTCGGGGTGGGTGCAGGTGGAGAACAGGTACAGGCTCGGCTCGTCGGCCTCGTCGGGGGTCCAGTCCTTCGGCGGCGCGTGCTCGGTCACCGTCGTGCACCCGACGACCCGGTCTTCGTCTTCGAGCACCCACATGAACCCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 20965-21783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000007.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20965 29 100.0 31 ............................. GCCCAGGAGCGCGACGTCGAGCTGCAGTCCT 21025 29 100.0 32 ............................. GCCGCTCCCATCAGCCCGGACACCGTCCCCAC 21086 29 96.6 32 ............................T TCCCGCCGGTAGATCTGTCGGGCGTTGTCCGG 21147 29 100.0 32 ............................. CTGTCGGACCGGGACGGCGTCACCGAGATGCG 21208 29 100.0 32 ............................. GTGTAGTCGATGCCGAGTTCTCCGTCATCGAT 21269 29 100.0 32 ............................. GACCTGGAGGCCGCCGCCGGGTACGTGGCCGC 21330 29 100.0 31 ............................. GCGGGGGATAACCCGGCGTTCGACGCTATGG 21390 29 100.0 31 ............................. GGGCCTGACCTATGACACACGCCGCCCCGAC 21450 29 100.0 32 ............................. CAGGCTGCTCTCCCCGCCGCCGTGGTGCTCGG 21511 29 100.0 32 ............................. AAGGTCGGCGGCGTCACCACCGGCCGCTGGGA 21572 29 100.0 32 ............................. GCTGAGATCGCGGACGCCTGTGCAGCGATCGG 21633 29 100.0 32 ............................. ACCGACAAGACCGTCACCGTGCAGGTCACCGG 21694 29 100.0 32 ............................. GCGAAAGTGCGGGACATCGTGAGTACTCCCTG 21755 29 89.7 0 ............T............G..C | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GTAGTCCAGTGCCCGCACGTCCTGCTCGTCACCCATCGGGGCCCTCTCTAGCGTCGGTGGATCATCCGTAGAGCGTAGAGGACCTCCTCCAGCTCCCGCCGTGACCGAGGAGAGAGCACGGTCGAGTCGAGGATCTGCGACACGGCCCCGACCAGTTCCCCGGCAGCCCGGGTGTTCAGCAGGGACGGCTTGCGGATGATGAGCGCCCACAGGGTGTGGCACACGACGTCGGCATAGGGGTTGATCGGGGCGAGGCGTCTGGTGAGGTGCTTGAGCAGCCGGTCGCCGGGCCAAGCATCCAGGTCGAGTTCGACCATGAACGTGTCCGCGAGCTGCGGGTCGCTGATCTCGCCGAGCCGGTACGCCCAGTAGTTCAGGTTCGCGATCTCGCAGGCGTCCGTGCGTTGTGTGAGGATGTACGTCTAGGTCAAGAGCGCTCAGCATGTCCTGAGTCAAGGTTGCGGGGAGATAACGGCCCGCGTTGTCGCAGGTCGTTAAGC # Right flank : CGTCTCGCGAAACTCCCGCCTGGTGGGGCGCGGTCTCGGTACGCTCACCGGGATGGTGACACTGAGACGCAAGGGGCCTGTGATGAGGGAGATCGAGACGAAGTACCGGGTGGTCGATCTCGAAGCGCTGCTGGCCGCGCTCAAACAGGCCGGGGTGTACATGAGCGACCCCGCCTACCAGGACGACCAGGCCTACGCCCCCGCTGGCTGGCGGCCGGAGTTGGGCAAGGTCGGCCACACCTTCGCCCGTGTGCGCACCCAGGACAGCGTGCACCTGCTGACCACCAAGACCCCGCTGGCCAACGCCATGGAGTGCGTGGAGTACGAGACCATCGTCGCCGACCGCGAGCAGATGCACGGCGCTCTGCTGGCGCTGGGCTACGAACCCACGGTGCGCATCGTCAAGCACCGTCGCACCGGCACCACAGGGCCCATCGGGGTGTGCGTGGACCTGGTTGAGGGCCTGGGCGCCTTCGTCGAACTGGAGCTGGTGGTCGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 4991-3925 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000076.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4990 29 100.0 32 ............................. ATGGTGCTGTACTGGCGTTTCGGGTCGTTCAC 4929 29 100.0 32 ............................. ATGCTCACTAACTAGGAAGCCCACGACCATGC 4868 29 100.0 32 ............................. GATTCGAAGGCCGCCACCAGCTGGTTCGCCTG 4807 29 100.0 32 ............................. TATTCGATCCGCCCCGGGCTGATGGGGAGCGT 4746 29 100.0 32 ............................. TCGACCAGCCCGTATTCGGGGTTGCCCAGGGA 4685 29 100.0 32 ............................. CCCTGACCGACGCCGGGATCCCCGCCTCCACC 4624 29 100.0 32 ............................. CCAGCCCAGGTTGCCGATTACCGCAACGCGTT 4563 29 100.0 32 ............................. CCACTGGGTCAGGAACCGCTCATCGAACGCGG 4502 29 100.0 32 ............................. CGCGTGCGCAGGTGCGTCTCGGTGACGGTGGC 4441 29 100.0 32 ............................. GGAAACACCATGCTCCGCACCGCGCTCAACGT 4380 29 100.0 32 ............................. ATCCGGGGCCGCCCCACCCACACCGCCTATCC 4319 29 100.0 32 ............................. CCACCGTGAGGCGCTGGCGCACACCTTCCATG 4258 29 100.0 32 ............................. TGCTTACCCGGAGGTGAGATCGACCTACCCAC 4197 29 96.6 32 ............................C CCACGCCCTGCTCGCCAAGCTCCATGCGGATC 4136 29 96.6 32 ................T............ GAGCCGCTCGTGCCCTTCGCCCCTGAGTCTGA 4075 29 96.6 32 ................T............ CCGGTCTACGCCAAGACCCAGGCGAAGGCGCG 4014 29 100.0 32 ............................. GCGCGCTCCGGTGGAGGCCCCTCCTTGAGGAT 3953 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : TCGAGCTGGATGGAGGTGAGCACGGCGAGATCCTCCAGTGCGAGCCGCCGCGTCTGCTCAAAGTGACCTGGCTCTACGGGCCGGATGCCGACGCGTGGCCCGGCACGAGCGAGGTGCAGCTGCGCCTGGCCCCGGGCCCGAACGGCGACACCGAATTCGAGCTCATCCATGCGGCGGTGGTCGAGGAACCCCTCTTCCCGACCTACGGCCCCGGTGCCGGAGGCGTCGGCTGGGATCTGCGTCTGCTCGCCCTGACCCAGCTGTTGGCAGGTGACGAGCCCGCCGACCACGAGGAAGTCGAGAAGTCGCACGAAGGGCGTGAGTTCGTCCGGCGCAGCGCCGCTGCCTGGGGCGAGGCTCACCTGGCCGCCGGTGGTGAACCGGAGCACGTCGCGGCCGCGGTTGAGGCCACCACCAGGTTCTACGCACCCGACCCGTCCTGACTTCCCCGCTGCGGTAGGTCGACCGGAGACGAACTCCTCCTTCGACATCGTGCCCTT # Right flank : CTGCCCAGTCGCCGGACCGACCTTCAGGTGTTGTGAGCCCCGCCATGCGGAGGTCAAATGGCGGTACGGAATTCGCCTGCTTTCTTGGTCGAGCCTGTTCGCCAGGGTGTTCGTCTAAGCGTGCGAACAGGGTGGAGGGCACTGACAGGGCAGGTCAGAGTGGGTGCAGGGTGTTCGTTCTGACGCCCCGACTTATAGCGTCTTGCTACTTCTTCACCGGGGTGGGGGAGGGCTGGGGGCGAGAGGTTCTCACCGCTCGGGTGTCCAACCCGGTGGGTGCGGGTGGCTTCTTTGGAGGGTGAAGGGGACTTCATCCGAGGAAGGGGCGTACCCATGTGGGCGTGGGACGAGGACAACGGCTGGTGCCGGGGCGGGGAGCGCTGGTGCTCCGTGAAGGCGGGTCACGGCCAGGGCCGGTGCCGTCGGGTGAAGGAGCCCGTGGTGCCGGTGGCGGGCCAGCGGGAGCGTCAGATGTTGCTGACCGACCTGCGGGCGCTGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 15095-12394 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAX010000076.1 Nocardiopsis dassonvillei subsp. crassaminis strain D1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15094 29 100.0 32 ............................. GGGCGCGTACTCGCGTACCTCCGAGAGGTCCA 15033 29 100.0 32 ............................. GGCCGCTCGATCACGGCGGCACGGTGGAGGCG 14972 29 100.0 32 ............................. TTCACGCCCAGCATCGAGGGGCGCATCTCGGT 14911 29 100.0 32 ............................. GCCAGGTTCTGAATCCAGTCGTCGTCGAGGGC 14850 29 100.0 32 ............................. GTGACCCAAGAGGGTGAGGCGGGCGTGCGCAG 14789 29 100.0 32 ............................. TACGAGCGCCTCCAGGAGCTCACCGCCGACCG 14728 29 100.0 32 ............................. GGTTTCTCGCCCTTCTCGATCGGGGTGTTCTT 14667 29 100.0 32 ............................. CCACTCTCCCAGCGGATGGACGAGCGTCGCGC 14606 29 100.0 32 ............................. GCAGCCGGCATCGGCACCCGCACCCGCTGGTA 14545 29 100.0 32 ............................. CCGCGCGAGGCCGCCCAGATGCTCGGATGGGG 14484 29 100.0 32 ............................. AGCATCCGGCGCATGATCTCGCGCTGCGTGGT 14423 29 100.0 32 ............................. AGCATCCGGCGCATGATCTCGCGCTGCGTGGT 14362 29 100.0 32 ............................. AGCGGCGCCTGCGCCTCACAGAGGCCGCAGAG 14301 29 100.0 33 ............................. GCGCACGTCAACGGCACTTTCATCGGGGGGGAG 14239 29 100.0 32 ............................. CTCTTGCCGTCCTCGTTGGTCCAGGTCTTCAC 14178 29 100.0 32 ............................. GCAGGCCATGGCTTACGACCAGGCGGACATCA 14117 29 100.0 32 ............................. GACACCCGCGGCCGGTACCCCGGTATCCAGGT 14056 29 96.6 32 ............................A TCTCCGCTTCGCTGTCTGGAGGCGACCACCTC 13995 29 96.6 31 ............................T CCATCGGCCAGCACTTCGTCGAGTCCGCCGC 13935 29 96.6 31 ............................T CCATCGGCCAGCACTTCGTCGAGTCCGCCGC 13875 29 100.0 32 ............................. CTCGCACCGGTCCGCGTCCTGTTCTACGGCAT 13814 29 96.6 32 ............................T CCGCGCGGCCTCGGCCCCGGGCGCCTCGGCCA 13753 29 100.0 32 ............................. GAGCTGGCGGTGATGGCGCCTCGGGCGTGCGC 13692 29 100.0 32 ............................. ATGGCGTAGCGCGCCTTGTCCCGCACCTCGGC 13631 29 100.0 32 ............................. CCGAAGTGCAAGCCCGGCTGCAAAGCGCGCGG 13570 29 100.0 32 ............................. CCGCGAGTCCCACGCGGTCTGCACACCGCCGG 13509 29 100.0 32 ............................. CGATTCGAGAAGGTCAGTACGCACGCGGCACG 13448 29 100.0 32 ............................. CCGGGGGTGTCCGCGCTCCAGGTGCTCACCTT 13387 29 100.0 32 ............................. ATCGTCCCCCACGAGTACACGGCGGCGGGGCA 13326 29 100.0 32 ............................. GAGCAGGCCAGGATTGTGTTCGGCACCGCCCG 13265 29 100.0 21 ............................. CGGGGGGACTCCTCTCCGATC Deletion [13216] 13215 29 100.0 32 ............................. GCCAGGTAGTACAGGTCGTCGTCGGGGTTGGC 13154 29 100.0 32 ............................. AGCTCCTACAGCACCCCGCAGTCACAGAACTG 13093 29 100.0 32 ............................. AAGTTCCCGACACTTCCCGTTACCCCGTCAGA 13032 29 100.0 32 ............................. CTGGCGGCCGCGCGCCTCGACGGCGGCGAGCA 12971 29 100.0 32 ............................. GGTCGGCACGTGGTCGGCGAGGATACGGGCCA 12910 29 96.6 32 ..............A.............. CCGGTGCGGGACTCAGATTCGCAGAGCGGGGA 12849 29 96.6 32 ..............A.............. CGCATGTCCATGCATTCCCCGACCTTCCGGAT 12788 29 100.0 32 ............................. GGGCCGGGGTGGATCGGCATCGACGGCGGCCT 12727 29 100.0 32 ............................. CAACGGCTGGCCCTGCGAATCCCCTCTGCGAG 12666 29 100.0 32 ............................. TGCAGTGCGACGGCGCGGCCACCACGGTCCGC 12605 29 96.6 32 ........................A.... ACCTGTCGGTCCGCTGGCGCCGCGATCTCGGT 12544 29 100.0 32 ............................. ATCCTCGCGCTTCGAACCGACGTCACCCAGAC 12483 29 100.0 32 ............................. ATCCTCGCGCTTCGAACCGACGTCACCCAGAC 12422 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.5 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : TCTGGCGTATCTGCGGATCGCGGCGGCGGAGTACACGCACGAGCTGCTGTCCGAGGTGGAGCTGCCGTGGATCGAGGAGAAGCGCCAGGCCTACCGTCGGGCCGCTGCCGACTGCTTCGTCAGCCTCGCCAAGGCCAGTGAGGGGCCGGAGCAGGGGCTGGTCTGGTTGGAGCGGGCGAGGGAGTCCGACGGTCTGAATGAGGCCGTCTACCAGGAGGTCATGCGGACCCAGGCGGCTTTGGGACGATTGGACGCGGTCGAGCGTGCCTACCAGGAGCTCAGCGAGCGGCTCAAGGCCATGCGTGCTCGTCCCAGTGTCACTACAAGCAGGCTCTTCCAGGAGCTTCTCGGTCGTTGAGGTTGCGTTAGCTGGGATGCTGGTGGAGCTGGGCGCCGGCTGTGTGAGTATGGACGCGGAACGGGCGTCGGAGAGGTTTTAAGTAAGCTCTCCGCATAGATTGCGAGGAGATAACGGCCCGCGTTTTCGCAGGTCGTTAAGC # Right flank : GCCCGTGGATCAGCCTCGACCGAGGAGACCCTCCACATCGCCTGGCATGACCCGGCAACGGTCCTCGCAGACATAGCAGCGAAAAGGGCCATACTGGAGCTGCATGTGAACGGCTGCCCCGGCATTGACTACTACATCACATGCTACGAGCACCACGAAGCCGCACCGTGGCCACGCCCCACCGTGCGCCTGCTCATGTCTGCATGCCAGCACAAGCCCGGGTGACAAGACCACCGGGGAGTGCGACAGGGCGCCCGTCCCGCACGGGCGCCCCCATCGTCACCCCTCAGACGGCTCTTCCTCGTCGTCCTCCCACTGCGACTCGTCCAGATCGAAGTCCGAAGATGTCTGAGCCCACCGGTATCCCCACGTCATCGACGCGTGCACCGAACTGATGCTGTCGTCCAACAGCTCCTCGCGGGCCGCCTCGATTGCCGCTTCAACTGCCTTCTCGTACACCGCCTTGATGCGCGACGAGTAGATCTTCCGGTCGCTCATCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //