Array 1 770740-768628 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR797830.1 Methylacidimicrobium sp. AP8 isolate MTHMO1 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 770739 37 100.0 41 ..................................... GCGGAAGCCCGCCGCCTTCCCTTCGCGCCCGACGGCTACTG 770661 37 100.0 40 ..................................... TCCCCGATCTGTTCGGCCTCTTCCAGTTGCCGTCTTGCAA 770584 37 100.0 40 ..................................... CGCACAAAGTGGGAGTTCACCTCCCGCCACTTTTCGGCGA 770507 37 100.0 42 ..................................... GTACTCGTTCATGAGAGTTTGTTTAGCACACTCCGGAAGTGC 770428 37 100.0 40 ..................................... CGCGTCCTCGCCTGCCATTTCATGACCTCCCGCGCCCTGG 770351 37 100.0 39 ..................................... TGAGCCACTCGACGGCAACCGGATCGGCGCGGACGCATG 770275 37 100.0 40 ..................................... CATGGCAATTCGCGGCTTGAATCCTGGCAATAGCTTTCAG 770198 37 100.0 39 ..................................... TTGTGAGACCCCTACCGCCTTACACGCGGCCATCCCACG 770122 37 100.0 40 ..................................... ATTAACAGCCCGGAGTCGCCCATGAGCGCCAATACCTGGA 770045 37 100.0 39 ..................................... CTAATGCCTGCCGCCAGTGCAAGTACTCCAAGGCGGCGT 769969 37 100.0 40 ..................................... TCCCGCCATTTTTCGGCGATAAAGGCGGGATCGGTGGCTT 769892 37 100.0 40 ..................................... CACCTGCGGGCTTGCTTCGCATACTTGCGGGCGGCCCACA 769815 37 100.0 40 ..................................... CTCCATGTATCGGCGCAGGGCACGAATGGGTGTTAGCTGT 769738 37 100.0 42 ..................................... CGCAAGAGTATAGAGCTTTGGACTTAACGGTGTGATGAACTA 769659 37 100.0 38 ..................................... GGATATCCATAGGCGAGGCAATGACCGGAAAGGCCGGT 769584 37 100.0 39 ..................................... AGAATCCGGGATAACGGGTGTGGGTTTATCGGTATGTCC 769508 37 100.0 40 ..................................... GGAATCCCTTGTTCCCACCCTTCCGGAAGCCGGGGAATTT 769431 37 100.0 37 ..................................... AATACATGGAGCAACGCGTCCAGGGGACGCAGACGGA 769357 37 100.0 38 ..................................... GGTACCCTCCGCGTATCGTGGCGGGACAGAAATGGGTG 769282 37 100.0 39 ..................................... CCCCGCTGGTGGAGCACGTCCTCCGCCCACCGAGGCACG 769206 37 100.0 41 ..................................... CTGCTCGGTATGCTCCATACGCTCCCTAATCATAGCGATCC 769128 37 100.0 42 ..................................... GGATTCTCTCAACCGCTGCCCCCAGGTAGGCAGCGGCCCAGG 769049 37 100.0 37 ..................................... TCGTGGTGGCACCGGCGTATCCGTCTAAACTAATCGG 768975 37 100.0 42 ..................................... ATGCGGGCGTTCCATTCGCCCGCATGCCGTCAAGACCCACAG 768896 37 100.0 42 ..................................... TTCATGTTTCCTCCTATCGGATTCCCATGGCAGAGGTACAAA 768817 37 100.0 41 ..................................... CGCCGTTTTCGCCGAATACTTTTGGCACCTCAATCGAGTTG 768739 37 100.0 38 ..................................... GCCAATATTGTTATTGTGGTTTCCATGTTCTTATCCCT 768664 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 28 37 100.0 40 GTCGGGAAAGGATGAGATGCCGAAAGGCAATGGAGAC # Left flank : TCGCCTCCCGGAGAAAAGAAGATGCTCACCGTGATCGCCTACGACATCGCCGATCCTCGGCGGCTCGCCCGGGTCTCCCGTATTTGCGAGGATTACGGCATGCGCGTCCAATACAGCGTCTTTGAGTGTTTTCTGGAATCGGAGCAGCTCGACGAGCTCTGGTCCAAGCTGGAAGACGAGCTGAATCCGGAGGAAGATCGGCTCGTCGCCTATCTAATCGATGCCAAATCCGCAAAGAAGACCCGCACCGCGGGCGCGATGGTATGCTCCGAACGGGTCGTCTGCTACCTCGTATGAATCTTCTTCTCCCAGGTCGCGACCCGACCCCGCCCATCCGCGGGCACCTGCCGACCGGAAACGTTTCCAGCTCGGCATCAATGGGCTCTGCATGATTTCCCGTTGCCGCGCGCTCCTTTTTCGACGAAGCTATCTGCCGATCGTCGCTCTCCCGACCTGCCGGGGATTTCAGGGCTTGGCAATCAAGCACTTCTCCAGCCGCG # Right flank : GGGCTGCCCGTCGGCCAGGTAGGCCTGCGCTTCCTCCGCCTGTCGGCCCGTGTTTGGTGAAAAGCGGCCTTTTTGACGACGGCTCCAGGGTTGGGGAAGGAAATTTTGCAAAAATGTAGTGCCACACTGTGAACAACTTGGCCGCATGAAAGTGGCCTTTTGTGCTTGCGATTCACGGTGACGACCGGTAATGCTATTTCCTGTTTCTGCGCACCCTGCGGTTGCGTCGGAAGGACGGGAGCGAGGCGGAGTATGTCCGCTTGGTGGAAAGCTACCGGGAAAAGGGAAAGGTCAAGCAGCGGATTGTCGCGACTCTTGGCCGCAAGGATCTCTTGGCACCCCACTTGGATCGGCTCGCGGAGTTGCTCGGGCGGAGCGCGCCGGCTTCTCGGAGAGCGCTTGAGCCTCAGGAATCCACAGTTTGGGGTCCAACGCTTGTCGCCAGACATCTCTGGAAGGAGCTGGGTCTGGAAGAGCTCTTGGAGGAGAAGAGGGGGAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGGAAAGGATGAGATGCCGAAAGGCAATGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 1333313-1332391 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR797830.1 Methylacidimicrobium sp. AP8 isolate MTHMO1 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1333312 36 100.0 37 .................................... TATTTCGGGGGCGACCAGGACGGGAAATATGCGACCG 1333239 36 100.0 39 .................................... TATCGCCCGGCGCGAAGTGGCCTACCACTTTCTCCCCAG 1333164 36 100.0 37 .................................... CCCACCACTCTATACGTGATTGCAGGTCGGCCAGCCT 1333091 36 100.0 38 .................................... CCGCGCATCCAGGAGTGCAACGCTTCTTGTCGCTGAAC 1333017 36 100.0 38 .................................... TCATTGTAGCGATAGAAACGCTATCAGCCGGAGGGGGG 1332943 36 100.0 38 .................................... GGGATTTTGGCGAGTTTCATCTCACTGTATGTCGGCGG 1332869 36 100.0 38 .................................... GCGAGATGATAGTAGTATCGACCACGACGCTTCTCCCG 1332795 36 100.0 39 .................................... TTACTGGAGTCCGGGACCGGGATTTCACATCCCGTCCGG 1332720 36 100.0 35 .................................... TCTCCAGGAGCGAAGCGAGGTTCAAGAACTCGATG 1332649 36 100.0 39 .................................... CGCCTTTAGGGTGTCCTTTTTTGTGGAGTCGTCCTTCGT 1332574 36 100.0 35 .................................... GTTAGCTGGCCGATTTCGGCCCAGGTCCTGGCGAT 1332503 36 100.0 42 .................................... GCAGCCAAACGCAGGCTGTTTCTGAGTCCGCTCTACGACCAC 1332425 35 83.3 0 ..........................-...GTTT.G | ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 98.7 38 GTATCCGAGGCGTTCGCGCCTCGGCCTCATTGAAGC # Left flank : GGTGTTCAAAGCCGTGCACGGGTACGGAGAATGGATCCAGCTCTCCGTTTTCCAATGCCGTCTGTCGCAGCGGCGCCGCGCCGAGCTCGAGACGCGACTGCGCCAACTGGTCAAGAACGGCGAAGATCACGTCCTTCTGATTGATGTCGGGCCGGCGGAGAAAATCGAGCTTGCCATCGAGAGCATCGGAAAAACGTTCTCGAAAGTCGAACGGCGCGCCACTATCATTTAAGTCGGCTTTCGAAGCTGGCCCGGGACTCCGACAAGGGTGGGTGGTTCCCGGAGGGATTGCGCGGTTTCCGCCGGCTGCTTTCGAGCGGTTCGGTGACGCGCAAACCCCCGGACCCGCTCGAAATGCTGCAAGTCGTTGGAGTCGTGGTGTTCTTTGACATCGCAGGTACCGCGGGGCAGAGACATTGGTGCGTTTTGGCGACAGCTCTAGGAGACCGCTCGAAAATGCAAAAACTGGACTTTGGTGACCAAGGACTTACATAGCGGCT # Right flank : TGAAAAGCGGCCTTTTTGACGACGGCTCCAGGGTTGGGGAAGGAAATTTTGCAAAAATGTAGTCCGCATGAAAGTGGCCTTTTGTGCTTGCGATTCACGGTGACGACCGGTAATGCTATTTCCTGTTTCTGCGCACCCTGCGGTTGCGTCGGAAGGACGGGAGCGAGGCGGAGTATGTCCGCTTGGTGGAAAGCTACCGGGAAAAGGGAAAGGTCAAGCAGCGGATTGTCGCGACTCTTGGCCGCAAGGATCTCTTGGCACCCCACTTGGATCGGCTCGCGGAGTTGCTCGGGCGGAGCGCGCCGGCTTCTCGGAGAGCGCTTGAGCCTCAGGAATCCACAGTTTGGGGTCCAACGCTTGTCGCCAGACATCTCTGGAAGGAGCTGGGTATGGAAGAGCTCTTGGAGGAGAAGAGGGGGAAAGGCAAAGGACTGTCCCTTGCGGAACGGGCGTTCGTCCTTGTGGTCAACCGGCTCTTGTCCCCGGGGAGCGAACACGCC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCCGAGGCGTTCGCGCCTCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.20,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 1414799-1412769 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR797830.1 Methylacidimicrobium sp. AP8 isolate MTHMO1 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1414798 36 100.0 36 .................................... TAGGCTGACGGGGGTCATCGACGCGCCCGACCTGGT 1414726 36 100.0 37 .................................... CTTGAACGGAACGATGTTTTGAAACCGCGCTACCAGC 1414653 36 100.0 34 .................................... CTGTATTCATGATTCCTTACCATTTCCCCGTCGC 1414583 36 100.0 36 .................................... GAGATAATCTCGGATCAACTGCGCCTTATGGAGTCC 1414511 36 100.0 36 .................................... TTTCCAGCAGCGGGGCGTTTATACAGGTCCCTGCGG 1414439 36 100.0 35 .................................... TGGACGGAGACGAAGTAAGATGAAGAACGTGACGA 1414368 36 100.0 35 .................................... ATACCACTTTTGCGCGCGTTCTTGTTCAGCCTTTA 1414297 36 100.0 35 .................................... TCGGTACTGTATCGAGGGCCGGACGGTACGCCGGG 1414226 36 100.0 34 .................................... TGGGAGCTTCTCAATGTTATTCCGATCGCTCCAG 1414156 36 100.0 34 .................................... TCGTGCCCGTGGTATATTCCGCCGCAGGTTCCGT 1414086 36 100.0 36 .................................... TCGGTATTGTATCGAGGGCCGGACGGTACGCCGGGA 1414014 36 100.0 34 .................................... TCGAGAGGACCTCTAAGCGGTTTCCCCGTAGGAT 1413944 36 100.0 38 .................................... CCCAGTTGACGAGGTACCGCCCGATAGTCAGACCGTCT 1413870 36 100.0 35 .................................... GAGGGTCGGGCGGTATGCATCTCGTCGTCCGATAC 1413799 36 100.0 34 .................................... ACATGTGCGGGACCATCGCGTACAGGGACATCGC 1413729 36 100.0 36 .................................... CGTTTCGTGGGCGGTTCTTCTGTCTTGGGGGCGGGT 1413657 36 100.0 36 .................................... TTCGGCGGCTGGCACGTGGAAATCACGGGCGCGCGG 1413585 36 100.0 36 .................................... ATCGGCCCCGCGAGCGATTCGCGCGGAAGCTCACCA 1413513 36 100.0 36 .................................... TACAAACGCTTTCTCAAACCCGCAGGCGTACAGGCT 1413441 36 97.2 35 .T.................................. CGCATATGGCAATATCCGGTTAGGGACGGCACGTG 1413370 36 100.0 36 .................................... GCTTGCTGGACACATTCCTTCTCCTTCGTCTCTTCG 1413298 36 100.0 34 .................................... AGCAGGGCTGCCGACTTGAGCGCGGCAATGACCC 1413228 36 100.0 34 .................................... GTCGATGCGCCCAATGGCCTCTCGGCCCAGGTGT 1413158 36 100.0 36 .................................... GTCGTGAGCGCCAGGAGCCGTCGGTGGACTGCTTGC 1413086 36 100.0 34 .................................... ATAAAGGCGCTTAAGTCTTTGACCAGCAGCGTTT 1413016 36 100.0 36 .................................... ACCTGCAGGCCAGGGTGAAGCCGGTCACCGGTGGCC 1412944 36 100.0 34 .................................... AGCAGGGCTGCCGACTTGAGCGCGGCGATGACCC 1412874 36 100.0 34 .................................... CCACAACCAAATGCGTATGAATCTGCGGATCGAG 1412804 36 91.7 0 .............................TT.G... | ========== ====== ====== ====== ==================================== ====================================== ================== 29 36 99.6 35 GCGGTTCGGGTCGGCGCAGGCCTGATCGACGGACAC # Left flank : TGCGTCCTGCAGGACATCGATCGTGTCCGACTGCAGTCGGAGCTCGAGGAGCAGATGAATCTGAGCGAAGATCAGGCGGTGATCTTGGACCTCGGGGCAAGCGAGCAAGAGGCACGGAAGGCGGCGACGGTGATCGGACACTCGCTCCCGGAGCAGTATGGTGGTGTGGTAGTTGTTTGACAGCGGGGCGGATCTGTGTAAAGATGGAGTTTGGCCCCTAGAGGGGGCCGGAACGCCAGGTACGTGTCTCTCCCTTCGATGGGTATAGCACCTGGCGTCGATCAGTTTTGCGCCGAACCGCGCAAGTTCTTTGAAATCGGGAGGCGAGCGTGGAGGTGGCGGAGAGGGCCCCAAGAGATGCTCGCATCCTTACAACGCGCTGACTATGAGAAACATGTTGTTTCCGGAAGAGCAACGTCAAACGAGACAGGTGCGCCGCGAAGATCCGCACTCGCATCTGTCCTAGGAGCGGTTGTATTGCAAATGCTTACAAAGCGGCG # Right flank : ATCGCATGAGGTCAGTTTGTGCCAGGCCTATCGGCTTCCGGCTGTGGAGTTCTGTGCCAAATACCGGAGGGCGGATGTAGTCTTCCCTCCGGTTGCGTGATGCAAACGATCTGTTCAGCGTAATGTCGGCCCAGGTTCTCGCGGCGCCATCCGCTCATGCGGGTACGGTCCAAGAGCTAAGGCGTCATCGACCAGGTAAATGTCCTTCGCGTCGGCGGAAAAAGGGCCCCGGGTTGTATCGGCGGCCATTCAGAACCTGGGTCTTGTTTTTCGGCTCCGAGCAAGGACAGGAAGAGCGGGGGTAGATGAACCGGGCGCCGCGTCGGCCGGAAAGCTCTGAGGAGCCTCCCGCCGTCCAGTTGTCGATCGTTCCGATCGAGACGCGGAGGATTTCCGCGTGCATCCGCTTGGTCATCACGGCCGGGAACTCCTCGATTTCCGGCCGAGATTCCTCTTTGTGCTTGGTCGTTTTCCCGGAGTTCCTATGCGCCGGTTGGCGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGTTCGGGTCGGCGCAGGCCTGATCGACGGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //