Array 1 139861-139649 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOIM01000022.1 Streptomyces reniochalinae strain LHW50302 NODE_20_length_179302_cov_18.0125_ID_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 139860 30 96.7 31 .............................C GGCCGACCGCGTCCATGTCCGGGTCGAGATC 139799 30 100.0 31 .............................. TCGCCGCCTCCTCGATCCACACGATCATGTA 139738 30 96.7 31 ...................A.......... CACTCCCGGTAAGGACGGTTACCAGGACTGA 139677 29 96.7 0 ....................-......... | ========== ====== ====== ====== ============================== =============================== ================== 4 30 97.5 31 GTGGTCCCCGCGCACGCGGGGCTGGTCCCT # Left flank : TACGGGCACCCGATGGGCAGGCCGGGGCCTGAATCGACACCCGCAGCTACGGCCGCGAGGACGAGACCGTGGTGCTGTGGGCCGGGCCGGAGGGATACCTCACCCGAGCCGAAGCGACCTTCAGCTCCGACACCCCCAGCCACCTCATCGCCGCCACCGCCACCGCGCTGAACGACCCCACGCCCGTCGTACGCGAGCGCCACATGATCCACCGGGACATCGAGCACCTCGTCCGCTTCGAACCGGTCACCGCCCGCGCCCAGCCGCGAACGGGCGCTCCCACCCCGCTGGACGCGAAGCACGCGGCCGTCTCCGCCGCCCTCCACCGCGCCGCGCACAGCGGCCCCGGTGCCAGGCGTGCCCAAGCCGCCCGTATCCGCACGACACACCCCCGGCCCCGGCCGAGCGCGACACCCGCCGCCCCGGCGGCCCGCGCCGACGCCTTCGCCACCGCGCGGACGGCTTCCCGCCCGCGGCGCTGAACTTATTTCGGAGTACGT # Right flank : GGGTATACGAGCAGTTCAGTCATGGAGAACTCACTTCGCTCGGGAGTGAGTCATCGTCTTCCAAGCCTACGGTTTGGAGAGGCCCGGCGATCGGTGATAACGGAACCGCCAAGCCACGATGCTATGTGGGACCCTGCCTCTGAGCGGGTGCGTGGTCGACCCGATCTGATGCCCGTACTGTTCCCGCACCAGGTGGGGTGGAGGCCCGCCGCCACGTAACGATGTGGGCCCACTCAGAGAAGCGGTCTGTGTCGACTCGTCCCGGTAACCGACTGGAAGGGTGCGTCCCGTGGCACGCGATTCCGACTTCTGTCTGGACGTTCCAGAGGACTTCGACGACGCGGACGACGAGACCGGCGTGTATCCCATAGCCAAGAAGCTGATCCTCGGTGCGACAGCCGCGGACGTCTTCAGGAAAGCCCATGAGTGGGTGAGGAACCACGACATCCGTTTGACGGACGTCTCCTGGGACCACATGTGCGACGAGGACCAGCCCTACG # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGCTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 166162-166859 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOIM01000022.1 Streptomyces reniochalinae strain LHW50302 NODE_20_length_179302_cov_18.0125_ID_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166162 29 100.0 32 ............................. TTCGGATGGTTCCGCACCGCCGTGCAGGCCGC 166223 29 96.6 32 ............................C TGATGGAGCGGGTCGCCATCATGCCGGCGGCC 166284 29 96.6 32 ............................T TTGACCGGGGAGAGCCAGCTGGTGGAGGTGAC 166345 29 96.6 32 ............................T CGCCACGATGGGGCGGGCGGCCCGGATCTGGC 166406 29 96.6 32 ............................C CCGATCGCGGCCTCGACGAACTCAGCGGCCGT 166467 29 100.0 32 ............................. GTCGAGGCCACGATCACGGCCGCGTGGCAGGA 166528 29 96.6 32 ............................C GACGCCCGCGGCCTCCTGCCCGACCTCGCCCA 166589 29 100.0 32 ............................. TACCCCCGCTCGGGGCGGGTGGTGAGCGAGAC 166650 29 100.0 32 ............................. AGAAGTGCGGCCAGGGCGAGGCCAGCGAAGAA 166711 29 89.7 32 .......T....T.C.............. GCCAGCAGCCCGCCCATCGTCATGCGCTCCCA G [166728] 166773 28 75.9 30 ............GGC...A..-..T...A CACCGGTCGTGAGGTCTGCCGAGGTGATGA 166831 29 72.4 0 ....CT.A......CCG.......G..G. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 93.4 32 GTCGACCCCGCGCCTGCGGGGATGCTCCG # Left flank : TCCAGCCCGAGGGAATCGACCCGGCCCCGGTGCCGCCGACCGGTCCGGTACTCCGAGGCCAGGAACCGGATCCCGAGCATCGCCTCCATATTGGCCTCGATCAGCGACTGCAACTCCCGCTCAACCGCCACCGACGCACCCGGAATCTTCGTCGCCCGGCCACCTCTGACCCGGAAGACCTTCAGGTCGCCCATGTGCTCCTCCCGCTCCAGCACCATCACTGCCAGGCAGGAATCGAAGCGGCCACGCGCTTATTCCCGGGTGACCAAGGTGACCATCAACTGCGTCGTTCTTACCGCCGCGTATGCGGTCGGCTTCGGCTTGTTGCAGCGTGCTCGGTCTACGGCGGCCAGCTCAAGCTGGCTCAGCGTGAGCATAAGGGCGACGTACGAGTCACTTTCCGGGTTAACCGGTTCGTGAACCGGAGCAGGAGGGCCTGGCTCGTAAACGAACTGAAGGAAAATGCTTACCCGCCGACACAAAGCTATGGTCAGCAAGGG # Right flank : GCAAATGAATGGACTCGGGGTGCAGGTGTATGCGCCACGCCTGTGGATGGTCCTGTGGCGTTGTCCTTGGCGTCATCGCTGTTGTCGACCTCGCACGGGAGGACTGGATCTGCGCTGGGGTCGACCCGAGGCGCCGGACGGCCGGTCCGATCCCGCGCCTTCGGGCCCGCGCTCCGGGTGTGAAGCCGACAGCGCGGGGTTGCTCATTCCCCGGGGTGCAAGCGGAGCCTGCTGGTGATTGTGGCGGGTGGTTTTCGCGGTTTTGGCCGGAGGCCGGTCCTATTGTCAGCGCTGCCATTTACGCTCCCTTCCGACGAGTTGATGAGGAGTGGGTGGCTGTGGAGCGATGGGAGTGCCCTGCGGAGCTGGGAGTGTTGTGGGGCAAATCGAAGGAGCGGGCCGGCGGGCGGATGAACCTGTTGATGTCGCATCTTCTCGATACGAGCGCGGTGGCCGAGTTGATGTGGGACCGCTTTCTTGCCCCTTCGACGCGCGAAGCC # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCTGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 176670-178483 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOIM01000022.1 Streptomyces reniochalinae strain LHW50302 NODE_20_length_179302_cov_18.0125_ID_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 176670 29 96.6 32 ............................T TGGTGGGACAGATGTCTGTCGCTCCCGTCCCC 176731 29 100.0 32 ............................. CCCCGCCGGTACCCCTCGACACGCTGCGCCCC 176792 29 96.6 32 ............................C TGGCCCACGCATCCCGCGTCGCCCTCCAGCGC 176853 29 96.6 32 ............................C TGCGAACCCCCATTGTTTGACAGGGTTGGTCG 176914 29 100.0 32 ............................. CCTTCACCTCGACCTCAGCCGGGAAGGTAGTA 176975 29 100.0 32 ............................. CCTTCACCTCGACCTCAGCCGGGAAGGTAGTA 177036 29 100.0 47 ............................. CTGCGGGTGCTCCCATCCGGCGCGGCCGGAGGAGAGCTCGCGCACCA 177112 29 96.6 32 ............................C ACGTGTTCCTCGTGGCGGACACTGGCGGCGGC 177173 29 96.6 32 ............................C TGCCCCCAGTGCGGCGGGTCGGGGGTGCGCTG 177234 29 96.6 32 ............................C GACGGGAGCCAGCGGGCGGAGCTGTACGCCCC 177295 29 100.0 32 ............................. CGTCCTTCACTGGCATGTCAGTCCCCCTTCTC 177356 29 96.6 32 ............................C TGGCCCACGCATCCCGCGTCGCCCTCCAGCGC 177417 29 100.0 32 ............................. CCGGACCTCATCCCGTCGCATCCCGACTTCGG 177478 29 100.0 32 ............................. CTCACAACCTCGATCACCGCACCCACCCCCTC 177539 29 100.0 32 ............................. GCAGGGGGATTCATGGAACACGGCGCCCCACA 177600 29 100.0 32 ............................. CTGTCCCGCGAGGCGACGTACATCGACGAGGA 177661 29 96.6 33 ............................T CGACTGCATGAGTGGTTCGCCGAGCCCGTTGTG 177723 29 96.6 32 ............................T CGCACTTCATCGCCAGTGCGACCAGGATGGCG 177784 29 96.6 32 ............................C AGGCACATGATGATGACGACGACGGTGCCGCC 177845 29 100.0 32 ............................. CCGTCCTTGAACGTCTTGACCGGCTTGTCACC 177906 29 100.0 32 ............................. CTCGGCCACGCCGCGCTCGCCGCACTGTGGGT 177967 29 100.0 32 ............................. AACGTCCGCGGTCTGCTCCTCGGCGCCGGACT 178028 29 100.0 32 ............................. GGAGGGACCATGGACGACCGTATCCGGCACTC 178089 29 96.6 32 ............................C GGGGTGAGGGGGACGTCTACGTACGCAACCAG 178150 29 100.0 32 ............................. TCCACTCTGATCCTCTCGGGTCAGTACGAAGC 178211 29 100.0 32 ............................. CTGCGGGAGGTACGGCACTTCTGTCATGCCGG C [178222] 178273 29 93.1 31 .........................C..A GGCGGGATCGCTCCGCCCTCCCGCCCCACGC 178333 29 100.0 32 ............................. GAGGCTGCCGAGCACGAGCAGCGGATCAGCGA 178394 29 100.0 32 ............................. AGCCGCTGCGCTGGCCCTTGGTCCTAGGCGCG 178455 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= =============================================== ================== 30 29 98.4 33 GTGGACCCCGCGCCCGCGGGGATGTTCCG # Left flank : GTCGAAGACACCAAAGCTCTCCTAACCCCCCAAGGCACCGACATCGACGAAGCCGAAGCACACCTGCTGTGGGACGAACATCTTGGCACCGTCTCCGGAGGCATCAACTGGTCCGCCGATGACAGCCATATCGCCGTCATCGGCCCCGAACTCGACGAGAGCGGACCGGCCCGATGACAGTCATCCTCCTCGTCGCCGCCCCGGAAGGTCTACGCGGCCACCTGACTCGCTGGATGGTCGAAGTCAGCGCCGGCGTCTTCGTCGGCAACCCCAGCCGCCGCATCCGCGACCGCCTATGGGAGCTACTGGCTACCCGCATCGGAGACGGCCAAGCCGTCATGGTCGAACCAGCCACGAATGAACAAGGCTGGGCAGTCCGCACGGCCGGCCGCGACCGCTGGCGCCCCGTCGACTTTGACGGCCTCATCCTCTCCGCCCGCCCCCGAACCCAACCGAACCAAAACACCCCTACACCGCGATAAACCCCCTGGTCAGCAAGT # Right flank : GCCCGGGTCCTGGACCCGGGCTTTCTGCTGCCTGTGGACGGAGGAGCTCTGTTACGACCTGGGCCGGCGGATCTTTCGAGACTGCCGGCTGCGACTCGGCACGGTCACTACTGACGCGGCGGGCATGCTCCCAGACGCGCTGGATCACGCCCTGACCCGGGCGGCGGATGCCGACGCGCGGACGGCCTTCGTCTACCTCACTCCCACCCATCACAACCCCACCGGCCGCACCATGCCGACGGCCCGCCGCCGGTCCCTACTGGAGGTGGCCGCCCGGCACGAGCTACTCATCGTGGAGGACGACGCCTATGCGGAACTGCCCCTGACCGAAGGCCGCACGCCCCCACCGTCGCTGGCCGCCCTGGCCGGCTACCGACGGGTTATCCGGCTGTGCAGCTTCTCCAAGACACTCGGCCCCGGCCTGCGCGTGGGCTGGCTGCTCACCGACCGCGCCCTGGCCGTGCGGCTGGCTTCGCACGGGTTGTTCGTCAGCGGGGGGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGACCCCGCGCCCGCGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //