Array 1 46362-47058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJS010000001.1 Bifidobacterium sp. MA2 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46362 29 100.0 32 ............................. GTGACCGGCGTGGTGGAGAACGCGCCGACGCG 46423 29 100.0 32 ............................. CGGACAACACGCGGTTAGAACGGCTGATGTTG 46484 29 96.6 30 ......T...................... AGGCCGGCCCAATGCGGTCAATCCCGCGCC 46543 29 100.0 32 ............................. TGCTTATTCGTACAATCAGTCATCTAAGCGTT 46604 29 100.0 32 ............................. GGATAAGCCGTTATCTGTTACGCAATGCCGAT 46665 29 100.0 32 ............................. CGATGGTCACGTCGTAGGTGACTCGAATCTTC 46726 29 96.6 32 ......T...................... GCTCGGACGGCAGCGACAAGGACGCCACGATG 46787 29 100.0 32 ............................. ATCACCCCCAGCTTCACGAAGACCAACAAACA 46848 29 100.0 32 ............................. GCGCAGCCATGCGTGTAGGCGGATACCACGGT 46909 29 100.0 31 ............................. GACCGGCCGAGAAAGACCCTCGGGTTTGAAA 46969 29 100.0 32 ............................. CGTGAAGGCGAACCCCACATCCACGACCACCT 47030 29 79.3 0 ...C.......CC.T...........T.A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGTTCCCCGCTTACGCGGGGATGATCCC # Left flank : GAGAGAACCATGGTGGTGATTGTACTTACCGCTTGTCCGGTGGGACTGCGTGGCGACCTCACGCGATGGTTGCTGGAAATATCCGCTGGGGTGTTCGTCGGCCATGTGAGCGCCAAGGTGCGTGACCGTCTGTGGGAACGCATCGTCGGCATGGTAAAGGACGGTCGGGCCATCATGGTGTATTCCGCCCGCAACGAGCAGCATCTCGCATTCCGTGTGCATCGCTCTGATTGGAGACCGGTCGACTGCGAAGGTCTCGAGCTCATCACGAGGCCGGCTCCTGTTTCTGGAAGCCGTGCCGAGGAACCGAGGGGTTCCGCATCCGATGCCGATGCGTCGAGATCCTCGAACGGTGCCCGCCGTCGTGGCTGGAGCAACGCCAGCAAGTGGAGAAAAGCACGCCGCTACGGCTGATGACGCCAACATACGACCCCAATGAAACTGAATCAAAAAACCGATTCCCGTTTGCCATGTCTGTTGCAATTACTAGCCTTCCCAAG # Right flank : ATCTACAATAACTGGGCTTTCACAATTGGAGCAGTGCTCCCCGCCCATCCAGATACGCGACCTTCGCCCTGAGGAACGCGATCTCCTCCTCGAGGATCTGCTCGCGCGTGGGGGCCGGCTTCGGTCTGGATCTCGCGCCCTTCGGCCTACCCTTCGGCTTCGGGTGCAGCGCCTCCGGGCCTCCCGCGCGGTACTCGCGGCACCAACGCTCCAACGGGGCGATGCTCGCGATCCCGTATCTGGCCATGACCTCGGCCTTCGTCAGGCCATGCTCCACATGGTCCCGCGCCGCCGCGAGCTTGGTCTCGTAGTCGTAGGTCCTGTTGCCCTTGCGTTCTCCCATGAGCGCCGCCTCCCCGCCGATCCGGTACAACAACACTCATCTTCCCGCGGTCGGCTGCGGCACACCAAGTCGTCCGGCGAGGGAACGATTCCCCGCACCCCGCCGGATCAGGTCGACAACGATCCGCATGAAATCATCACTGTAACGACGTCTGCGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCTTACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 54857-55190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJS010000001.1 Bifidobacterium sp. MA2 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54857 29 100.0 32 ............................. AGGGCGAGCCCGCCGAACATGCCGTCCGACCA 54918 29 100.0 32 ............................. TGGAGGACGATGGGCACCGGCGCCGGCCTCGT 54979 29 100.0 32 ............................. CAACACGTACGGCGCGGAATATCGCCCGCCCG 55040 29 100.0 32 ............................. ATCGCGCAGAAGGGCACACCGCTAGTACCGAA 55101 29 100.0 32 ............................. ACGGCGATGTAGATGGCGGCGGCGTAGCGGGC 55162 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCCTACGCGGGGATGATCCC # Left flank : CAGCTCAACGAGGGCGTGACCCCGAAGACGGTCCACGTCACCGCCACGCATCAGGACGGCTCCAAGACCGAGTTCGACGCAGTCGTGCGCATCGACACCCCCGGTGAGGCCGACTACTACCGCAACGGCGGCATCCTCCAGTACGTGCTGAGGAACCTCATGCGCAAGTGACGCTTACGTCCATACGGTCCATACGGTGCTTATCCTTGTGAGCCGCATAATGCGAGTGAGCGGATAATGAATGGATGGGCTGCGGACGGCCAATGGGATCTTTTTTCGTTGTCGTCCGCAGCCCATCCATGCTTCACTGGGTGCCGGCGTTTGATTTTCGGCATGAGCATCAGGACAGGCAGCGGGAAGAACGTTTCGCAAATCTATGTCTATTGTGATAGCCGCAGGGTCGCGATTGCCGTCGCCGCTGAGCTTCCGTTGCCAATGAAACCGAATCAAAATTAAGTTCTCCTCTGCCATGTCCTTTGCAATCATTAGCATTCCCAAGT # Right flank : CTGCTCCGCACAGATACATGGCGGGCAGTCATTCTCGATGCTGCGTATCGCAGGCACCCAGAAAGCGTTTCGAGTGAAATTCGACGAAATCAAGACGGGTAGCGTTGCGGAACGGCGGCAGACGGCGCTTCGGCGGCTGTGCGGGGAAGTTCAGTCACAGTTGAGCGCTGACGGGAATTTATTCTATTCATGACATGTTCCAAGCAGGATTGGGAGCCGTGGCTATGAATTACGCGCAGATATCCCATTTCGGGCATGCGTGCAAGAACTACTTCGAGACAATCGGAGTCCGGGAGGGAGGGGCATTCGCGGAAATGACGGCCGCTCAGCTGACCGACGAGTATTCATGGGAGATAATGAAGCAGTATTTCCCCAACGCAACAGAAATGTTCGAAAAGATGGTTATGGAGGCACTGCATGGCCCTACCGTGGAGTAACGGTTTCGAAGGCCTACTCAATCGCTATTCGGATGTATTTCATGAGCCGTACTTCCATTTCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 176759-176486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJS010000002.1 Bifidobacterium sp. MA2 Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 176758 29 96.6 32 ............................C CTCGACGTCCTGTCCGGCGGCACCGTCGCCTT 176697 29 96.6 32 ............................C TGGCTCGCGGGCCTCGGCAATGAGCACGCGGA 176636 29 100.0 32 ............................. GACGTGACCGACTGCGCCTCCTACCAGTGCAA 176575 29 100.0 32 ............................. CGCCCCGACCGTTGATGACCCATCGTCTCGTG 176514 29 82.8 0 ......T..............G..C.TT. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTTTGCCCCGCATCTGCGGGGATGATCCG # Left flank : GAGGATACTCTGCGCGAGGAGTTCCGGGGTGAGGCTCATCAGAACGATTTCGGAGCGGAGACATGATTGTCATCGTGCTTACCGTCTGTCCTCCGAAGTTGAGGGGACATCTGACGCGGTGGTTGTTCGAGATCTCGCCGGGGGTGTACGTGGGCAAGGTCGGAGCCCGCGTGAGGGAGCTGCTATGGGAACAGGTGCTTGACAATATCGGTGGGGGGGGGGCGGGCGGTCATGGTCTTTCCCGCCGACAACGAGCAGGGACTGTCGTTCCGTACGCATGGTCAGGAATGGCAGCCGGTGGATTATGACGGCTTGGAGCTGATCATGAGGCCGAACTCCAATCAGAAGCAGCGTCGGAACGGGGAGCGAAAGACCGGATGAAGCAAGGCGTCTCGTTATCGGAGGTTCGGCAGATGACGGCTTGCCATGGCGTCCACGTGACTGCGCGAATCGAATTTTTCGACGTTGATGATGTCATGTTTTCCGCATAAAATCACACT # Right flank : TGTGGATCGGATGAGTGGCGGATTCTAGTTGCGGGGAATGCAGAAGAGTTTGAGAAGATTCGTTAATTGGGTAACGTGACCTGTTTTGGTGATGGTGTGAATTAGACGGGCTGTCTAGACTGTGGTGCAGAACCAATGACACGACACATCGTCAACAGGAGGGCATCATGACGGACTTCAACGAGAACGGCCGGGGCGATTCGAACGGCCGAAACCCGAGTCAGGGACGGCCGGAGTATGGACAGTACGCATCCGGCTATGGGGCGGGTGGAGCCGCGCAGGGCGCCCCACGGACCAACGGCCAGTACGGCGGCGGCCCCTACGGGCAGCCGCAGGCCGGGCAGGACGGCAACCCCTACGCCAATCCGTACGTGAACCAGGCCAACAACCCGTACGCGGGTGCGAACCCGAACGGCCAGTACGGCCAGCCGGGCTGGCAGCCGGTCGATCCGTTCAAGCTCATCGAGAGCATGCTGCCGCAGCGCACCAAGAACTGGGTG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATCTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //