Array 1 11294-12545 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWPZ010000049.1 Ralstonia pseudosolanacearum strain Lallmahomed 66 IPO151-2017_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11294 29 100.0 32 ............................. ATTTGTGAGCGCCTCGCAGATGGGATGAGTCT 11355 29 100.0 32 ............................. CCTATGTTGCAGGATCAACCGGAGCAATGTCT 11416 29 96.6 32 ............................A GCCGAGACCCTGGCAGGCGGGCTCGAAACGCG 11477 29 100.0 32 ............................. AGGATGTCGATGATGACGGCTGGGCTTGGTTT 11538 29 100.0 32 ............................. TGCATAATAAACAATGTACTTAATACCTAACA 11599 29 100.0 32 ............................. TGACCGCAACGTACGGCGTCGCTTCTGGGCAG 11660 29 100.0 32 ............................. CGCGCAGATCGCGTTCTGCGCTTCGGCTTGCC 11721 29 100.0 32 ............................. CTGCCGCCCGGGTCGGACGTGACCCGCTTGTA 11782 29 100.0 32 ............................. TGCGTTGATCCGATCCTCGCTGCCTTCGGTCG 11843 29 100.0 32 ............................. CGGTCGGATCCATACCACTTTCTGACATGAGC 11904 29 100.0 32 ............................. GGATTACATGCCCACAATTGACCAATTATCGG 11965 29 100.0 32 ............................. CATGTAGAAGCAATTATCAAATTGCGGAACAC 12026 29 100.0 32 ............................. CCGGGTCAGTCACGGCTAAGAGAGAGACAGGG 12087 29 100.0 32 ............................. CCGAGGGCATGCGTCAATACCTGAACAGCCAA 12148 29 100.0 32 ............................. ATTCCCCATCCCTTTTTTTCGACTACTTGCGC 12209 29 100.0 32 ............................. CATCAATCAGACGCGAGCACAGGATTTCCGCT 12270 29 100.0 32 ............................. TCGCAGAACACCCCGCCTCCACGCACCGAGAC 12331 29 100.0 32 ............................. ATGCAGGGCGGCGCGTTTTTCCGCCAGCTGTT 12392 29 100.0 32 ............................. TTGACCAGGGTGTTGGCCAAGCGCTTGGCCAT 12453 29 100.0 32 ............................. GGATGATGTCCAGGAGGTATTTGATTCGATTA 12514 29 86.2 0 ............CA..........T...A | A,TC [12537,12539] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGACGACCTGGAGGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCCGGCTTTGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATTGAGGGTCGGGTTGGGTACTTTGTTGATTGCGTGCGGTAGGGCGTTGTCGCGAGCTTTTGTCCGGTGGTAGATCGGTAGATTTTTTGGGGCCGGATTTTTGCTTTTGGATCAGGGGTTTGCGGTAAGT # Right flank : AACCAGCCCCAGTTCGTGCGCTGCCTGCAGGGACCAAAGAAAGTCCGCAGATTAATCCCTTTCTAATCCATCAATTGGATAGTCTTTATATCTACTGAAGTCACCCAAGAAAATCAAAATAAATACCCGCAAGACTGCTACGATCCCCTGCTCGGGAGCAGGCACAGATTGTCAATTCATTGGCATCAAGAACATGCATCAGGCTGACATGGGGAAAGGGGGGGTGCGATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCGGCCAGCGATATCACCTGCTTGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTACTCTTGCGCCGCTGGCTACGGAACTTGGCTGGCCATTGCAGGCCGTCAACAAAATATTCGCGTGGTTCCTCGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCAGGGTTATCTCCCGATCTCGTCTCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21911-23284 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWPZ010000049.1 Ralstonia pseudosolanacearum strain Lallmahomed 66 IPO151-2017_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21911 29 100.0 32 ............................. TGGCTCCACCAGCATCTACCCATACCTCAGTA 21972 29 100.0 32 ............................. TACGCTGTGCCCCGCGCCGGTCTTGCATGAAG 22033 29 100.0 32 ............................. CCGCTCAGGATGGATTGCCATTTTCTGTTAAC 22094 29 100.0 32 ............................. ATTTCAACATCGGTATGGAGGCAGCGATTCAG 22155 29 100.0 32 ............................. CCATCACCCGCGCCAGCGCCGCGACGGTGGCC 22216 29 100.0 32 ............................. ATCAGTGGTGGATTCCGTGGGGAGTGGCTGGA 22277 29 100.0 32 ............................. CCGAACCTGCAGTCCATGCGCCCGCTGGGTCA 22338 29 100.0 32 ............................. GCGTCAACGTCCCAGCCAGGCGGTACATGATG 22399 29 100.0 32 ............................. GCGCCGCCCGCAGGACCGTCGCGGGCGGACGG 22460 29 100.0 32 ............................. TTTCGCGTGTCCGGCCGGGGATTTCTTGTCGT 22521 29 96.6 32 ............................T ACAATGGGCTCGTATAGAACGTTTGACTCCCT 22582 29 100.0 33 ............................. CACGTCAGACGGAATGCGGTGCCACAACCTGGG 22644 29 100.0 32 ............................. ATTTCTGCACCTCACGAACGCAGACCAGATCA 22705 29 100.0 32 ............................. GCCACCCGCAGCGCTTCCTCTGGGTCGTCCCA 22766 29 100.0 32 ............................. TCGCTGGTGCAGGCGCCCCCGATGATGGTCGC 22827 29 96.6 32 ......T...................... GTGTTCGCTACCACGCTAATTGCCCGAGGCGT 22888 29 100.0 32 ............................. TCATCCCGGCCGGTAGCACTATCCGTGTAGAG 22949 29 100.0 32 ............................. CGCGGCAGCTCCACGAGGATGCGCGGATGGTC 23010 29 100.0 32 ............................. CAAACGAGTCTCGATAAGGTCCCTGTGCTCGA 23071 29 100.0 32 ............................. ACCCGCAAGACGCTCACGGCGGACCAGAAAAG 23132 29 96.6 33 .................A........... GGGGATGCGCGGCGTCTGTTTGTGCGGTTGGCC 23194 29 86.2 32 A.......T.........A..G....... GCTTAGTCGCTGAAGCTTGTCCAGATGATCGT 23255 29 86.2 0 ............C..........ACC... | T [23269] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.4 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TCGCATCATCCCCGCCATCGAGGAGGTGCTCGCAGCGGGCGGCATCTCGCCTCCGGAGGCCCCCCCGGAATCCGTGCCTCCCGCCATTCCCAATGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTGTACATCGGCGACGTCTCGCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTATGAATTCCAGACACTGGGCGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACGATCGGTACCTTTTCGGTGGTGGAATTTTCGCTTCCTAATCAATAGGTTGGGTTAAGT # Right flank : GCCGACTCCGCCGCAGGACAGGATCAGCCCGCCAGCCCAGCCCGCGCCGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGAAGCAACCGAGCCTTCCAACGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGGGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATATCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGCGGTTCCTTGTCTTCCTGGTTGTCCTTGTTGTAGGCCAGCGGCTGGCCCTTCATCAGCGTAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //