Array 1 1917462-1915933 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021323.1 Kushneria konosiri strain X49 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1917461 28 100.0 32 ............................ AACACCACCCGCCAGATAACCGCACAGCTGAG 1917401 28 100.0 32 ............................ ATTACAATGTCGATCCCGGTCAATGGCTCCAT 1917341 28 100.0 32 ............................ ATGTCAGAGGAGGCGTCGCCCATGACGGGCGG 1917281 28 100.0 32 ............................ AGCTTGACCAGCCGCTCGAGCGCGCCCGAGCC 1917221 28 100.0 32 ............................ CATGACGGGCGGCGGCTTTGCAACACAACAGT 1917161 28 100.0 32 ............................ GAACGCTATCAATCTGAGTCCCAGCAGTACAA 1917101 28 100.0 32 ............................ GCACGGGCCTCGGCCTCCAGGTGCAGCTTGAG 1917041 28 100.0 32 ............................ CAAGCCGTTCTGGGAAGTGGCGGCAACCCTGC 1916981 28 100.0 32 ............................ TGCGCTCGATCAACATTTGGGAGGGTGGGCGC 1916921 28 100.0 32 ............................ TGGGACTTTCTTTCGGGCAAGATAAAAGGCGC 1916861 28 100.0 32 ............................ GGAGCACGTCGAGGCATGGGAGCTGTTCTGTG 1916801 28 100.0 32 ............................ ATCAACGGCTGGACAACTGCAGAAGGTGACAC 1916741 28 100.0 32 ............................ TCATCGTCCACCGCGTAGCTGGTCGCCTCATC 1916681 28 100.0 32 ............................ TGGCTGGTAATGCTGGGAAAGCACTGGCAGTT 1916621 28 100.0 32 ............................ TGCGGATGCTCGGCCTGCTTTCGCGCCCTCAA 1916561 28 100.0 32 ............................ GGCACAGGTTTGCTAGGTGTGTTGCGCCAGCT 1916501 28 100.0 32 ............................ CACCCATGTTCAGTGTGTCGTCAACGATTACG 1916441 28 100.0 32 ............................ GACTCGATCGCTGAGGCGCACCTGTGGGCCGT 1916381 28 100.0 32 ............................ GGGAGACCGTCGCCGGCGTCGACTTTGATGTA 1916321 28 100.0 32 ............................ CGCTCCACGTCTTCGCGAAAGGCTCACGGCTT 1916261 28 96.4 32 ............A............... TGCCGTGACAGGGCGTACCCCATGGGGCGGTT 1916201 28 96.4 32 ............A............... TGGTACGTGTCCACGCTCGAGAACGAGTACGC 1916141 28 96.4 32 ............A............... ACATCGGCTTGATTGGTAACAAGCAGCGATCA 1916081 28 96.4 32 ............A............... ACCAACGCCCCAGACATCATCGACCGATGTCC 1916021 28 100.0 32 ............................ TTACCCTTAAAGGGTTTCAAAAGGCTTTTTGC 1915961 28 78.6 0 C...........AT....C...A.A... | A [1915940] ========== ====== ====== ====== ============================ ================================ ================== 26 28 98.6 32 GTTGGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : AGCGTCTTGAGACGCTGTTGGCGCAACCATGGCTGAAAGGGCTTCGTGAGCTTGTGGCGTGCAGTGAGATCGCGCCTGTTCCGGCCGGAGTGCATCATTGCGTCGTACAGCGACGGCAGTTCAATACCGGCAGCCCCAGTCGGGTCCGACGCTATGCCAAGCGTCACGACGTATCCGAAGCACAGGCTCGAGAGATCTACGCCGGAGTGGCGGGCAAGCAGATCTCGCTTCCCTTCGTTGAACTGGCCAGTCGCTCGACCCGGCAGCGCTTTTGCCTCTTTATCGAGCACGGCAAGCCGCAATCACAGCCCGCCAATGGTCGCTTTAACCACTACGGCCTGAGCCACGAAGCCACGATCCCCTGGTTTTGACCCTTTTTTGCGAGCGTTTTTCGACGCTCGCAAAATCAATGACTTATAGAAAGGCTTTGAAAAAGGGTTCGATAGGGTAATTGGCTCGAAAGCTCTTTAAAAACCGGGCATTAAATATATTTTTATCTA # Right flank : ACCCGGCGCCATGGGCGCCGGGTATCATTTGACATCGTCTCGCCTGAAAGGCGGGCTTAGACGTCGAAGCGGTCGTGCATCATGACCTTGTTCCAGGCCGCCGCGAAGTCACGCACGAGCTTCTCGTGACCACCCTTCTGGGCGTAGAACTCGGCAAGCTGACGCAGCTGAGAGTTGGCGCCGAAGATCAGGTCGCAACGGGTCGCCTTGAACTTCGTCTCGCCTGACCTGCGATCGTTGAGCGTAAACTCCAGCCCTTCGGAATCCACCTTTTTCCACTCGAAATCAGGTGAGGTCAGATTGAGGAAGAAGTCATTGGTCAACACACCCGGACGATCCGTGAAGACACCGTGCTGTTGATAGGCGCCCTTCGCATTGACGTCGAGCACACGCAGGCCACCCACCAGAGCGGTCCATTCAGGCGCTGACAGACCCAGCAGGGCCGCACGATCCATGAAGATCTCTTCCGGCGAGACGTTGTACTTGATGTCATCGCGATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1926834-1927099 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021323.1 Kushneria konosiri strain X49 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1926834 28 82.1 28 TAGTT....................... TTGCGGTCGAGCGGTTCGCCGCGCACGC 1926890 28 89.3 32 CC...........T.............. ACGTCCGACCGTCCAGCTATCGCCCCCGCTGG TT [1926895] 1926952 28 100.0 32 ............................ ATCATCGACCGGCAAGCCTGGGGGGAAGAAAA 1927012 28 100.0 32 ............................ CACATCAGCAAGTGCCAGTGCGGTGTGCCGTC 1927072 28 89.3 0 ..................C...TG.... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 92.1 31 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : ACGTGGTGCGATGGCTCGATGGCCAGACCAGCGAGCAGGTGTTTGTGACCGCCATCACCGTGGCTGAAATTCTGCATAGTATTGCTCGTCTGCCGGCGGGCGCGCGGCGCCAGAGACTGGGTAACATCGCTGCGGCCATGTTCGAGGAGGATCTGGCCGGCAGGATACTGTCCTTTGATGCAGATTCAGCGGTGGTGTATAGCCAGTGTGTCGCCACGCGTGAAAACAGTGGACGACCGATCAGCATGGCCGATGCGCAGATTGCCGCCATCTGTCTACAGCATCAGGCTGCACTGGCCACACGTAATCTAAAGGACTTTGAAGGATTGTCGATGACACTGCATGATCCATGGCAGGTGCATCAAACGGGATGACCCTTTTTTTATCGACGGTTATCGCTCCTTAACAATCAAGGCGTTATACAGCAGGCTGAAAAAAGGGTTTTTGAAGGTTGGCACCAGTGAACCCTGTAAGGCAGGGCTTTCCGGTGAAACCGTCTC # Right flank : AGAAAATAAAAGAGCCGCCCGGATGGGCGGCTCGAAAGGATGCATACGGCATCGACAATGCAGCTCAGGCCCCGATCTCAGGCCGTCTCATTTCGGGGCTCTCCTTCCAGGCGCTGTCTGGCCCTCGGGGAGCGACAGGCCGCGGCAGTAAAGAGCACGTCGGTCGAGGAGTTGAGGGCGGTTTCGGTGGAGTCCTGCAGCACGCTGATGACGAAGCCGACGGCGACAATCTGCATCGCGACGTCGGCGGAAATGCCGAACAGGCTCGCCGCCATCGGAATCAGCAGCAGCGAGCCGCCGGCCACGCCGGAGACGCCGCAGGCGGCGAGTGCCGAGACCACGCACAGCAGAAACGCCGTCAGGAAATCGACACCCAGCCCCAGCGTGTTGGTGGCGGCCAGCGTCATCACGGTAATCGTGATCGCCGCCCCGGACATGTTGATCGTCGCCCCCAGCGGGATCGACACCGAGTAGGTGTCCCGGTGCAGCTCGAGGCGTTC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //