Array 1 71586-73174 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDG01000002.1 Providencia rettgeri strain APW139_S1 24_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 71586 28 100.0 32 ............................ TTTTTGAGCCTTACGCGCTTGCGGATGATCTT 71646 28 100.0 32 ............................ TAAATTTCGCTCCGTTGATTACTTATACAATT 71706 28 100.0 32 ............................ TGTGGAAAACGCCGGCTAAACATAAATAAGAT 71766 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 71827 28 100.0 32 ............................ GCCATGTTGGTGAGTATGAATAACCACACCAT 71887 28 100.0 32 ............................ TAAAGGGTGGTGGTCAGGCGACGACAACAAGT 71947 28 100.0 32 ............................ ATGCTTTACTACAAACTGGCTTGAAGCCTTGT 72007 28 100.0 32 ............................ GATATTTGCTCTGCATCATCCTGCTCGCTAAC 72067 28 100.0 32 ............................ ATAATCCCTTGCTGCATTCCAGACGGTCTATT 72127 28 96.4 32 ............G............... TGAGTAAGCAAATCATCACGATAATCATAGAA 72187 28 96.4 32 ............G............... TTGTTCAGATAGCGGAAGCAATCGGCATGAAT 72247 28 96.4 32 ............G............... GTAGGCATGTAAGCCGACATACATTTGCTTAA 72307 28 96.4 32 ............G............... AGTTCCGTCACATATTAAAGAAAGCAAATATA 72367 28 96.4 32 ............G............... TTTATAAAAATCAGATGTATACATTCTTGATG 72427 28 96.4 32 ............G............... TAATAAACGTACCGCGACGATGATCTTAGCGT 72487 28 100.0 32 ............................ ATCCTCAGAACTTGAGAAAAACACATTAACTA 72547 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 72607 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 72667 28 100.0 32 ............................ GTTATAGCGTACCGATGTGGTACCCCGACTAT 72727 28 100.0 32 ............................ ATACGCACTTGCAGTCTCGAAGTGATTACTAT 72787 28 100.0 32 ............................ GTCAATTTCATAGTTAAAAATATTTTTTCCGT 72847 28 100.0 32 ............................ CTACGGCAAAGATGAAGAGATGGAGCTGCAAG 72907 28 100.0 32 ............................ ATTGATATTGTAGGGACACAAAAAAAACTAGG 72967 28 100.0 32 ............................ ACATCCGGTGCCGGTAATAAACTTAAATCAAT 73027 28 100.0 32 ............................ TTGAATTTTCTTTCTCTGAAGCACTGATGCAA 73087 28 100.0 32 ............................ CTACCCACGCCACGCTATTTATGTGATTTAAC 73147 28 92.9 0 ......................A.A... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTATTTTGAGGTACCTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 81812-82801 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDG01000002.1 Providencia rettgeri strain APW139_S1 24_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 81812 28 100.0 32 ............................ TGAGACTACCCCCGTAGTACATGACGGGGGTT 81872 28 100.0 32 ............................ AAGAAAAAAAGATGAAGTTAGAGAGATTAGCT 81932 28 100.0 32 ............................ AAAACAAAATCAGGGGTCCGGGATTATCAACT 81992 28 100.0 32 ............................ ACTGTGAGCACGAAGCAAGTTATAGATAGCCA 82052 28 100.0 32 ............................ TGGTAATCGCTGAGGAGGAACAACCCCTTCGG 82112 28 100.0 32 ............................ GCACACTCTAAAGAGATAAAAACAATAAAGCC 82172 28 100.0 32 ............................ TTAACCCAATTAGTTCCCTGCATTAGATAGCC 82232 28 100.0 32 ............................ TTAACCCAATTAGTTCCCTGCATTAGATAGCC 82292 28 100.0 32 ............................ TATCGCTTCATCCTTGTGATAGTCTTCATTAC 82352 28 100.0 32 ............................ CGTAGGTAGGTGATCTCGATGCTCTAAATAAT 82412 28 100.0 32 ............................ ACGCTAAGATAGTGTCAGCGACAAAGGCCGGA 82472 28 100.0 32 ............................ TCAGAAATAGCAAAGAATCTCACGATTTCCGA 82532 28 100.0 33 ............................ ACATCATCGTTTACGATACTTGAATTTTTATTT 82593 28 100.0 32 ............................ GATAAAATCGGGGGGATTTGAAAAGAGCAGGG 82653 28 100.0 32 ............................ ATCTGATGCCTTTGGGGTTATCTTCAGAGTTA 82713 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 82773 28 89.3 0 ...T......A.........T....... | G [82799] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAGGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAATCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATATGAGTTAAAACTAGTTTTTGTGTAATGAGTAGCCACACTGCTCTTCCTTAAGGTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCGACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGAATAACCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACTCCTAGCATACTGATACCTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //