Array 1 877688-880695 **** Predicted by CRISPRDetect 2.4 *** >NC_018407.1 Mycoplasma gallisepticum NC95_13295-2-2P, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 877688 36 100.0 30 .................................... AATCGAATAATTATGTTCAGATGTACTTTG 877754 36 100.0 30 .................................... GAAACGGCCGCAAGTTACTTACATACAATT 877820 36 100.0 30 .................................... TTTGCATATTTAGATCGTTACTTTGACAAA 877886 36 100.0 30 .................................... AATAAATTTAAAATTGCCGATTGTGTTCAA 877952 36 100.0 30 .................................... TTATAACAGATAATAACACTTGACGCGCTT 878018 36 100.0 30 .................................... TCAGATAATTCTTCAACTGCAACAACGTTA 878084 36 100.0 30 .................................... TTTATAACAACAGATTACGCTTTTTTATTC 878150 36 100.0 30 .................................... TTATTTATTAAACGACGAACAAAGACGTTT 878216 36 100.0 30 .................................... TTGGGCTAATTTACCGTATAAACTATTAAG 878282 36 100.0 30 .................................... AAAGCCCCGAACAACTAGCTTTCGAAAAGA 878348 36 100.0 30 .................................... ATTCATTAACAAAAAAGATGTTAAATAAAC 878414 36 100.0 30 .................................... TTTTTTCAAAATTATACAATAACGATTTAA 878480 36 100.0 30 .................................... CAGATTTTAAGAAAGAACGTTTAATTACAA 878546 36 100.0 30 .................................... GTAATACTCAAGAACTGCATCGCGCAAGTC 878612 36 100.0 30 .................................... ATCTTGTTATTATTAGCGTTTATTTGGCCA 878678 36 100.0 30 .................................... TCTTGTGTCTTGAAACTTGCTATAAAAGTA 878744 36 100.0 30 .................................... AAAGTTGTATTGTGTTTGAACCATTTCACT 878810 36 100.0 30 .................................... AGGTTGTTCATGATTGACATTAAAATTAAA 878876 36 100.0 30 .................................... ATTCAATTGCGTTTTTTAAACGTACAAATA 878942 36 100.0 30 .................................... TTTGTTTTTATCTTGATTCGAAAGACATTA 879008 36 100.0 30 .................................... ATTCTGCCGCCACGATATCGATTTCAGTTC 879074 36 100.0 30 .................................... ATAAGAACAAGAACTATCTAACGCTTTTTT 879140 36 100.0 30 .................................... GTAAGTTGTCGATCTCTTCACTAACGACAG 879206 36 97.2 30 ......A............................. TTGTTGAGCTAATTGGACTTAAAGCAAATA 879272 36 100.0 30 .................................... TTGAAATTTGAATGTTTGGAAATCTTCACG 879338 36 100.0 31 .................................... GCAATAGTTTGTAAGCAAAACGTGGGAGGGG 879405 36 100.0 30 .................................... AATTAAAAGTTAAGAACGTTGTTGCTGACG 879471 36 100.0 30 .................................... TAGTGTATTTTAACCACCGTTCAAGCGCTC 879537 36 100.0 31 .................................... TTTTTTGTTAATGAATTAAAAATCTTATCAG 879604 36 100.0 30 .................................... TTTTTTAAGCTCATCTTCAAGGTGTTGATT 879670 36 100.0 30 .................................... TTTAAGCGTTCCGATCGTTTGTCAAATGTG 879736 36 100.0 30 .................................... AACTTATCTGCATAACCCTTTTGAATCTCT 879802 36 100.0 30 .................................... AAGTTGATCATTTAAATGAGCTTTTAAAAA 879868 36 100.0 30 .................................... ACGTTTGAGGTTCAGCTAATTCTGGGGTTA 879934 36 100.0 30 .................................... TAATTAATCGCGATAATACAATGTATTTTG 880000 36 100.0 30 .................................... TTTGATCATCGACTGTTCAAAGAAGGCGTA 880066 36 100.0 30 .................................... TAGTTAAATTAATTTTTAAAGGATGGTTTA 880132 36 100.0 30 .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 880198 36 100.0 30 .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 880264 36 100.0 30 .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 880330 36 100.0 30 .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 880396 36 100.0 30 .................................... GTTTTGCTTATAAATTGTTACAAGACTTCT 880462 36 100.0 30 .................................... ATTCTGCCGCCACGATATCGATTTCTGTTC 880528 36 100.0 30 .................................... ATGGTGACGAATATAAACCCCAACTTGATC 880594 36 100.0 30 .................................... CAACAGCCGTTGTTAAAATTAAAAAAACTA 880660 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 46 36 99.9 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGCCGTGATATTATCTCGTTAGATACTTCTTACTCTAAAATTCTGAAATCAATAATCAAGATTTCAGAAGATTATATAGATCATGAATTTATCTATTCATATCTGGAGTTATTACATTGATCAAAAGAAATTAAAACAATTATCCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTGAGTAATTTAACTCAAACTACTAATCTAATTATTATGAAAAATGATATTATCTATGATCTTGAAAAACATTTTGAGTTTTTTGAGACATACTGCTTGATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATGAAGAGTTTAAGACCACAATGTCTTTTCATCAGCTAGAAATAATTAAAAAGGAATTAAAAAAGCACATTAATTAGCTTATTTTACTTGACAATGAG # Right flank : CAAAAACAAGTATTTTTTACAAACGAAAAAGTTTTATCATTAAACATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTTTACTTAATCTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGGTAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAGAATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTATCTTGTAGATCCTTGATCGCATAAGATAAGTTGGCAACCTCAATTAGATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACCGTGTTGTTAATACTTGCTTGGTTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATTCCACCAAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //