Array 1 3626904-3625244 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029568.1 Salmonella enterica subsp. enterica serovar Typhimurium strain DA34837 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3626903 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3626842 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3626781 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3626720 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3626659 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3626598 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3626537 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3626475 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3626414 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3626353 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3626292 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3626231 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3626170 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3626109 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3626048 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3625987 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3625925 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3625822 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3625761 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3625700 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3625639 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3625578 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3625517 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3625456 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3625395 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3625334 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3625273 29 96.6 0 A............................ | A [3625246] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3644528-3643035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029568.1 Salmonella enterica subsp. enterica serovar Typhimurium strain DA34837 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3644527 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3644466 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3644405 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3644344 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3644283 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3644222 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3644161 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3644100 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3644039 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3643978 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3643917 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3643856 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3643795 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3643734 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3643673 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3643612 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3643550 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3643489 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3643428 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3643367 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3643306 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3643245 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3643184 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3643123 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3643062 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //