Array 1 24404-23657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGZY010000037.1 Pectobacterium brasiliense strain IPO:3649 NAK:55 PFBIHILD_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24403 28 100.0 32 ............................ ACTTCCAAGCATCCTCAACCAGCACAACTAAC 24343 28 100.0 32 ............................ ACATACCGCCTAAGCCGACCGATGATGTTGTC 24283 28 100.0 32 ............................ ATTCCATGGCGGCCAAATCTGCCACAGTACGC 24223 28 100.0 32 ............................ ATGACTGATTTAAGCAATGAAAGACTGGAAAA 24163 28 100.0 32 ............................ ACGGGAATTCGGTGCTGCTCGAATAGCGGTAC 24103 28 100.0 32 ............................ GAGGGGCAGTCCGATCCATTCATGGCAATGAT 24043 28 100.0 32 ............................ ACCCATGTTCACAACGTAAACCGGCATTACAC 23983 28 100.0 32 ............................ ATGCGAACCAGCAGGCGTCTGTTGCCGCCGCT 23923 28 92.9 32 A..........T................ AGATAATGCGGCAACCGTGCTGTTCAAACACT 23863 28 96.4 32 ...........T................ TCACCGAAATGATTGCCACCAGCCGTAACGGT 23803 28 100.0 32 ............................ TATGAGACAGTGTTAAAAAGGCGAAGGCCAAT 23743 28 100.0 32 ............................ CTTGAGCAGCAGTTAGCAGCAGAACGGGCGAA 23683 27 85.7 0 ...........T.C.........-..T. | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCCACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAGATGTTCTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCTATCGCAGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGAGATAAAATGAGTATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : CTATCGAAATGCGTCGCTGGTGCGACGCATTCTTGAGGACTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCATTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATAGGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCGGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 32977-34805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGZY010000037.1 Pectobacterium brasiliense strain IPO:3649 NAK:55 PFBIHILD_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32977 28 96.4 33 ...........C................ ATTAGGCGCTGCCATTGTACGGCCTAGCATCCG 33038 28 96.4 32 ...........C................ GGTATGTTGTGGTTTGGACAAAGCCCGTATCG 33098 28 96.4 32 ...........C................ CGGGTCATCCATTGTCGTTGCACCTGTTAGGA 33158 28 96.4 32 ...........C................ TCAGATGCTCGATGACAACCGGCTCTGGCGCT 33218 28 96.4 32 ...........C................ TGAACCAGTTCACATCGATGCGCGTGGCGTCG 33278 28 96.4 32 ...........C................ TACTTCAGCGATCGGGAGCTGGAAACGCGTCG 33338 28 96.4 32 ...........C................ GCCAAGCACGGATTGCATATCCAATGCTTTGC 33398 28 96.4 32 ...........C................ TATCCAGCGCGCCCGCATCAAAACCGAAGTCA 33458 28 96.4 31 ...........C................ TCGCATTCCTATGAATTCAGCTATGCTGCGT 33517 28 100.0 32 ............................ AAGCAGCAAGATGACGCTGGAAAACCTGAAAG 33577 28 100.0 32 ............................ TCACGTTTTGGATAGGCTTTCCAGCATGATTC 33637 28 100.0 32 ............................ ATTATGTTTCGCCACGCCGCCCATTGCCGTTG 33697 28 100.0 32 ............................ GCTGCACGCGGGGTAACTTTCCCAACATTTCC 33757 28 100.0 33 ............................ TAACCGCAGTGGCCATCCGAGAATTTTCAACAG 33818 28 100.0 32 ............................ TGTGACGAGTGCTCGAAGCGTTCTGCTTCTTT 33878 28 100.0 32 ............................ GACATGGATAACCCAGAAGTGGTAGCCCGCTG 33938 28 100.0 32 ............................ TCAAGGGATGGCGACGGCGGAGACGGTGGACA 33998 28 100.0 32 ............................ AGAAATGTGCCGGACGCCGTGGCCAAAAACAT 34058 28 96.4 32 ...........C................ AATGGCATGTGCTCAGCCAGAAAATCAACAAC 34118 28 96.4 32 ...........C................ TGTTTTAATTTCAGCATGAGGAACCGTCACCC 34178 28 96.4 32 ...........C................ AATAAGGCCGCGCTGATTGTTGAGCGTGATTC 34238 28 100.0 32 ............................ AGCAAGACTTTTTGCTGATTGCTAGGCAACGT 34298 28 100.0 32 ............................ GCTGTTGCTGCTGGCGTCGTCACGTTGACGGC 34358 28 100.0 32 ............................ GTCCGGTGGATACATAAACCGCCAGACCGGAT 34418 28 100.0 32 ............................ AGACAGCGATAGACTTTCTGAAACTCGACGAT 34478 28 100.0 32 ............................ GACGATCAGGTCTGGGATGCCTATAACCAACA 34538 28 100.0 32 ............................ GCCAGCCCCACGCGCGCCCATCAGCAACGAAA 34598 28 100.0 32 ............................ TCTCGTCTTGACGAACGCCGATCGGGTCAAAT 34658 28 92.9 32 ...........C.C.............. GCAGTTAGAGCGCAAGGACGGTGACGCATGAG 34718 28 100.0 32 ............................ TCCGCTCTGTAGTCTGCGAATTAGAAGCACAG 34778 28 78.6 0 ...........T.C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 31 28 97.7 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAAAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGTTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTATGACGCCAGCGAAATAAATCTCAGGCTAATTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : ACGACATTAAGTGCTGCTGTCTGGCTATTATCGAGGTAGCACCATCGTCAGTATTTGATGTGTTATCGTCGTTAAATAACGTATTTTTGATTCCCCTTTCCCGTAACATTTTTAAGTAACGGGTTTCTTTGTGGGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATTATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATATTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTTTTGCAGACGTTATGCACGCCTAACCCTAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGATCCTG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 42116-41608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGZY010000037.1 Pectobacterium brasiliense strain IPO:3649 NAK:55 PFBIHILD_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 42115 28 92.9 32 ...........GT............... TTAACGCCAGAATCGACCCACTTAATTAAACC 42055 28 100.0 32 ............................ ATACGAGGGACGAGGTACGCCATCTTGAGTGC 41995 28 100.0 32 ............................ CGTGCCCGTATCGCTACGCAGCAGTACAGCGG 41935 28 100.0 32 ............................ CCCTGCGGTTAATCACACCCACAATGCCGTTT 41875 28 100.0 32 ............................ AGTCTGGCATCAACATTTACCCGCGTTGGACT 41815 28 100.0 32 ............................ TTCATTTATCGCGATGACGCGAAATATTTCAA 41755 28 100.0 32 ............................ GTTCTGCCAGCCGCTCCAGTTCTCCCGCCGTC 41695 28 96.4 32 ...........C................ ATGCGAGATTTTCTCAATGCGAAAGAAGAGGC 41635 28 82.1 0 ...........CGC......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATAAATACAGAAATTAAGCCAGCGACTTACAGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATTCATAGCATATGCAGATACCTGACATAGGCCTATCTTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAGTTTATATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAGCTTTCCTAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAATGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //