Array 1 182966-183438 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAP01000009.1 Rhodospira trueperi strain ATCC 700224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 182966 37 100.0 34 ..................................... TTGAGCAGGTCCCGAACTGCCTGGTCTTCGGGAA 183037 37 100.0 45 ..................................... TCCGAAGAAATGCGACCACGCTTCCGTGAACTGGATATTCACCAG 183119 37 100.0 35 ..................................... ACGCTTACTCCATTACGGCGTCACGTCCAGCAGCG 183191 37 89.2 32 .....T.....T.......G.T............... CTACGTATGGCTGTACCCAGCCGCGTGGCGGT 183260 37 89.2 36 .....T.....T.......G.T............... GGTACCAAAGGTACCCGAGGGCGCCCGCCGCCAGCA 183333 37 89.2 33 .....T.....T.......G.T............... GCGGCCTCCGTCATCCGCCGTGCCATTTCGGCC 183403 36 81.1 0 ...A.......T......G..........G.-.C.C. | ========== ====== ====== ====== ===================================== ============================================= ================== 7 37 92.7 36 GGTGAACACCCCTCCGCTTATCCACGCGGACTGAAAC # Left flank : GAGGACCTGCCATGGTTCAGCGACAGGCTCAAGGATCAGCCCGAGGCGCAGAAGTCCTGGCGGCGGCGGGCGCGAAACGCCATCCTGATCGGAACGGTGGGGACGTTCCTGCTCGGCTTCGGGATGCAATACACTGGCCGGATCATGGCGCCGGAGACTGAGTCGGGTTCAAGCGCGGGGCAGACCGATCCGGGTGCTCCGCCGACGCCGGAGGACGGCGGTTAGCCCTGTCCGACCGCGATGTCGTGGCGGACCGACCCGAACCGGCGCCGGACCTCGGTGTGACGCAAAAAAAATGCCGCCAGATCAAGGTGTTCGTTGGGAACTGGCGAAATGGGGACATCAGTGGAAAAGGTGAAACCCATTGAGAGAATTGATGAATTGGCGCCGAGACATGCAGAAATTCAATCCTGGGATGCAGAAAGCCGCCTTACGCACCTCGCATCAGTGGAACGTAGGGGGTGAATTTCGGCCTTGCGCAAACCCTTGCGAGGGGGTAG # Right flank : CGCTTTATCCCGGCATGATCGCACCGAATGCGCGTTTCCACCCCTTGTCTGGGCCGGACGCCCGGGCTACCGTTCCTGGATGAGGCCCATGGTTGCATCCGGGGGGCATGATGGGGGCATGGCTATGCCGCGTCGAGGGCGTGAACTTCAACACAACGGTGTTCGACACCAATGACCTGTCCACGGTGCGCGGCGCATCGCTGGGCTTGCTGCACCTTGACCGAGCGGTGACGGCGGCTCTGCCGGAAGCCCAAGGGGTGTTCTCCGGTGCGTCCCAATGCGCGGTCGTCGTGGACCGGGAGGGTGACGAGGCCACAGTCGCCAGGGAGCTGCGCGAGACCATCAACGCGGTGCTGACCGACCGGACGCCCGTGTGGATGGGTATGGACAAGAAAGCCGAGACCGCGCCCCCCTTCCCGGCCCTGACGACCGTCATCGACGTCGTACCGCTGGAGAACAGGGACAAGGAGACGGTCGCCACTGCCCTGGACCTCGCCGAG # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGAACACCCCTCCGCTTATCCACGCGGACTGAAAC # Alternate repeat : GGTGATCACCCTTCCGCTTGTTCACGCGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2091-1552 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAP01000034.1 Rhodospira trueperi strain ATCC 700224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2090 37 97.3 34 ..................G.................. ATGGGGAGCACGGTGTGGTAACCACTGGACGTGG 2019 37 100.0 33 ..................................... AATGTCGAAATCGGCATCGGGGAGAAGTCTTAC 1949 37 91.9 40 .................C.GA................ ACGCAAAGTTCGCAAAGAATGGATGCAAATTGTGGAGCCT 1872 37 89.2 34 .....G...........C.GA................ GTTTGCCGCTTGCCACCTGCTGGAGCGTAGCTGG 1801 37 100.0 33 ..................................... AGCAACTTGCTGCAGCGTCACTGGTGCCAGGCG 1731 37 100.0 36 ..................................... GACAATCGTGAAGCGCATCCCTTCGTGGGCCAGCGC 1658 37 100.0 33 ..................................... GAAGCGTTGGGGGCAATAACCCAGCTGTCGCCA 1588 37 75.7 0 .................C.GA.......A..C.GGCG | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 94.3 35 GGTGAACACCCTTCCGCTTATCCACGCGGACTGAAAC # Left flank : GATCGGTCAGGTCCCGCTGGACTACATGCCGCTGAAGTCATTCAATGCCATCCGGAAGGGAACCAAGCCTCGGAAGGACGGCGGCCCTCCGGCCGCCATCACCCCGGCCAACGGCGCTGCGCCGGTCCCGGGCGTCCGCGACCGGTTCCTTCCAGCGTCGCCGGCGGAGGCGCCGGCCACGCCGACCAGACCGAAAGGAGCTTCGGCGAAGGGGTGACAGGGGCTGGTCGCACACCGCCCCGACGGCTCGGCAGACCGATGCCCACAATCCGCCCGGCGGACCGGAAGACTGGGTGGATAGTCTTGAAAATCAGTGCATTACGGCGCGGTCTGGAGAAATTGAGATCCGTGGAAAACGGCAAGGCTTTGCACCATATGGGATATTTTGGCATGTGCACGCCTTATAATATAACTTCTCGGAAGCTTCGCGGAATGATTTCCCGCATGGGTGGAAAGTGGCCTCAAACAACGGCCTTGATCAAGGGGTTGCAGGGAGGTAA # Right flank : TCGGCGCCACCCTACCCGAGCCCACCGGCCTACGCCTTCTGATTGCACCCTGACCCGCCGCGCCGTTATGCTGTCGTCCGTATCGGGGGGCAGCCGGAGGGCGGCGATGGAGGGCGCAGGGGCGCGGCAGACGAACAACCCCAACCGTCTGCGACAGCGGTTGGCGGAGCCGATCGACCACGCCACGGCGGACGACCTGCTCGCCCGCTGGTTCCAGGCCGATATCGTGGTGTGTCTCGGCCCCGCCCTGGCCCCGGATCGGATCTCCGACCCGCGCTTTCCCGGCCGCCTGCGCGGCGCCCTGGGCGAGGCCCTGCTGGCCGGCGCCAGCGCCGAGGCCCGCGCGGAACAGCCCTGCCCGTGGGACCCGCCCTGTGCGCTGGACGTGCTGTGGGGCAAGACCGGCACCGTGCGCCGGGGCGTGGAGATCCCCCGGCCGTTCGTCATCCGCGTCGATCCCGATCCGCCAGAAGGCGCCCGCGTCACCCTGTCGCTGTTCG # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGAACACCCTTCCGCTTATCCACGCGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 196930-202866 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAP01000003.1 Rhodospira trueperi strain ATCC 700224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 196930 36 100.0 37 .................................... CGGCCATTGGCGGGTATTCCCCTGACTTTCTTGGGTA 197003 36 100.0 38 .................................... CTGGCAACAAACGACGCATTCAAAGCAGGATCAGAACC 197077 36 100.0 38 .................................... AGCTCTTGCTCCTCATAAGCCCCTTTGAACGGAACAGG 197151 36 100.0 37 .................................... CCCTCGGCGAACACCATGTCGTCGAGAATTTCGTTCG 197224 36 100.0 38 .................................... CCCACGCCAAATTGTCGCCCCCGGCAAACGTGCGGGAG 197298 36 100.0 37 .................................... TCGACAAGCTGCACAAGAACGGCGTTCAGTCTGTCGC 197371 36 100.0 36 .................................... GGCCGCGTCGCCGTAGCACGTCGCCGAGGCCGGCGC 197443 36 100.0 38 .................................... TTGCAGCACGCGGTTGTCGCCGAACAGGTCCGCGCAGA 197517 36 100.0 39 .................................... ATCGGCTCCAGGTCCAGGGGTTCAGTCATTGGTCCGGCC 197592 36 100.0 40 .................................... AAGCGCGAGACCAACCCGGCCGTTCAGCGGACGCAACATG 197668 36 100.0 36 .................................... GGGGCGGGAAGCGAGACCGGCATCACCGCTGCCCCC 197740 36 100.0 35 .................................... GAGCTTTTCGCGCGCCTGAAGGTTCGCGTCGTCCA 197811 36 100.0 38 .................................... CCAGACGTGCCAGTGGTCCTGCCCATACAGATTGCTCT 197885 36 100.0 37 .................................... CGATCAGCCCCGCCGCCACATCGCGCACACCGGAATG 197958 36 100.0 37 .................................... ACGGGATACTCCCGCCCGCCGCCCCGCCCCTGACGGG 198031 36 100.0 36 .................................... AGGAGTTGGCGGCCTATGGCGACGGAAGCGACGGAG 198103 36 100.0 36 .................................... GCGACCGGACGCCTGAGCGTGGCGCACCGGGAAAAT 198175 36 100.0 37 .................................... CCCCGCGTAGACGCGGTGGCCGCCCTCAAAAGCCGGT 198248 36 100.0 38 .................................... ACGAGTGGTAGCCCTCATACACTGGAGCGCACAACCGT 198322 36 100.0 36 .................................... TGCGAGAGCGCCCTTGCGCAACCAGTCGCTCTTGCC 198394 36 100.0 37 .................................... CGTGAAATCCCGGACGGCATCCGCGCGAAGCTGAACG 198467 36 100.0 38 .................................... CAGGATCGGTTCCGTGGTGACGACGGGCGCGGCTACGC 198541 36 100.0 41 .................................... AGGCGATCCGAGCGGTGTACGCCGAGTCCCGGGCCGCTTGT 198618 36 100.0 36 .................................... CGAGTTGCGGCAACTGTGGATGCGTGACCTGCTGTT 198690 36 100.0 38 .................................... TCAGGTTGGTGCAGGAAGGCGAATTAGAAATTGATGAC 198764 36 100.0 36 .................................... GCTCATGGATTGGCAGCGGTTGGTGCTCTGGAAATG 198836 36 100.0 38 .................................... CTGGGATCGGGGACGACGGTCATTGCGGCCGAAATGGA 198910 36 100.0 38 .................................... GCCGTTGTATAGACCGGCCGTCGCGCAATTGACAATTG 198984 36 100.0 40 .................................... ATGGGGACATTGAAGACGTGTGGCGCGCTGAAGTTCGTTT 199060 36 100.0 38 .................................... GAGGGTGAATCGCCCTGCCTCTTCCTTGAGGCCCGTGT 199134 36 100.0 38 .................................... GCGATGGCGTCCTTGTTGTCCCACGCCTGTTCGGCGGC 199208 36 100.0 37 .................................... ATCTCATCGACCAACAGGGTGACGCGCGGCGCGTCCG 199281 36 94.4 37 .T............C..................... ACCGCCGTCGCCTTGGGCCCCGCGAACGCCAGGATCA 199354 36 94.4 37 .T............C..................... TGGGCGAAATCCCAAAGCCGATCCGCCGAGACGGTCG 199427 36 97.2 39 ..............C..................... GCCCATTTGGCGCACCGTGGCCATGGCGGTTTCAGAGTT T [199429] 199503 36 94.4 40 .T............C..................... CGCCGTGAGGTCGACCGCCGGTCTCTTGATTGATCCGGCT 199579 36 94.4 38 .T............C..................... TACCGCCAGTGCCGCGACGAAACGCCGGACGTCATGAA 199653 36 97.2 37 ..............C..................... GGCATCGGGATGTTGCTGCCGTTTTTGTCCGCGTTCG T [199655] 199727 36 94.4 37 .T............C..................... CGCTGCGGCGGCATCAAGCTCTTGAGCTTCCTTGCGC 199800 36 97.2 38 ..............C..................... AATGCCTTGTGGATTATATGTTGGTTGTTTTTTATAAA T [199802] 199875 36 94.4 37 .T............C..................... TATAAGCAGGATGTATCCAAATCACATGAACGTCATG 199948 36 94.4 36 .T............C..................... AGCGGCGCACTCGGGAACTTGTCCCGCTCCCACGGG 200020 36 94.4 36 .T............C..................... GCGCTGGGGGTTCTGCAACAGTCCGGTGGACATTCC 200092 36 97.2 37 ..............C..................... ACCTGGTCACGCCCGAAAGCCTGGCGCGCCAGGTCCG T [200094] 200166 36 97.2 37 ..............C..................... CAAGAGCCGCGCCGAGGTGGTCTCGGAAATGGGCTAC T [200168] 200240 36 100.0 38 .................................... CGGCGCAAGCGGGCGACGTAGCTTGGCTTTTGCCAGTC 200314 36 100.0 37 .................................... TTTTCGCTCATCCTTGGGATGTTCCCTTTTGTGGATC 200387 36 100.0 40 .................................... CAGATCGCGGTGGCGGATCGGCTCGCGTTCGGGCCGGAAC 200463 36 100.0 36 .................................... TTAACTCCATGTCCGATTTCTGGCACCCGGAGGCCC 200535 36 100.0 35 .................................... GTCGCGTGGGTGGAAGGGGGCAGGGCCGATGGGTG 200606 36 100.0 39 .................................... CGGATCGGCCGGGCCATGCACTCGACGGGCTTTTGGGTG 200681 36 100.0 38 .................................... GAGGTGATGGGGCCGAACCCGGAGGGCACGCGCCGCCT 200755 36 100.0 38 .................................... TGAGCTTATGTTGGTTACAACGTCTGGGTATCCATGGC 200829 36 100.0 39 .................................... GGCCGCCTGCCGGCGCCCCAGTTCACCGGCCCCGGCCTG 200904 36 100.0 36 .................................... GACTATCACGAGGCGCTGACGCTGATCAATCCGGAC 200976 36 100.0 38 .................................... GGATTTCCTCCTGGGACATCACCTTTCCGCGCGGTGCG 201050 36 100.0 38 .................................... TTCTCTATCCTTTCAAATTCTTTCCCGGACGTAATGAT 201124 36 100.0 38 .................................... CCGGGTGACTTACGAACTGAGCGCGGCCGATACCCTGG 201198 36 100.0 39 .................................... ACCCGCGTCAAATCCACCGGCCCCAACAGCGGCTCACAC 201273 36 100.0 37 .................................... GTGTCGAGCCAACGAGTGTTCAAAAGTTTGTTAAAAG 201346 36 100.0 38 .................................... GCGGGGCGTGTTCCAGGTGCGCTGCTCCCAGCCATAGT 201420 36 100.0 38 .................................... GCCTCCGGTGACCTGGAGGTGCTCGACCCATGACCGTC 201494 36 100.0 40 .................................... CTGACGCAGGCGGGCGCCGAAGGTCTGGATCCCAAGGCCG 201570 36 100.0 37 .................................... ATGCGTTTGGCGGCACCGGCGCGATGGCGGAGGCGTT 201643 36 100.0 39 .................................... CGCCGTATATCTGCCGACGCCCGCGCCAGCGCCAGCGAC 201718 36 100.0 38 .................................... CCCGCCTCGCGGTCCAGGCCCTTGCCCATCGCCTCGCC 201792 36 100.0 38 .................................... GGCCGCGCCCCGTCCGGCCGGTCGACAAGCGGCCCGGG 201866 36 100.0 41 .................................... TCCGTGTTGGTGAGTGGCGTGAACCAGGAAGAGCTGGACCA 201943 36 100.0 39 .................................... CTCGGCGCGGCGATATACGTCAGCGCTCGGCCCTGCGTG 202018 36 100.0 37 .................................... CGACGGCTGCGGGCAACAACGGTATTCGCCGCGCCGG 202091 36 100.0 37 .................................... CGTGTCTTGAACGAGGGGTCAACGACGAAGCGGCACC 202164 36 100.0 38 .................................... CCCCTTCACCATACCGCCCAACCGTAATCCAGGCTTCT 202238 36 100.0 38 .................................... AGGCAGAAGAGCAGAAAATGACAGCAGCTGCCCAAAAG 202312 36 100.0 37 .................................... TCATTTTCAAAATCCGCGCGCAAAATTCGTATCGCTG 202385 36 100.0 43 .................................... GCCAACCCGTAGGCCACTCCGCCGATGACCACCCATCGGACGG 202464 36 100.0 38 .................................... GTACTCAGTCTCCAGGTCCACCGGCCCGCCGCCGGTCT 202538 36 100.0 38 .................................... AATCCCTCATTGACCGATACGCGGGGAACTGATCATGG 202612 36 97.2 38 ..............C..................... GGAAAAATACCCGGCCTCCCACGCGTGCAGCGCGGCGT 202686 36 97.2 38 ..............C..................... ATGCCCTCGACCCCGCCGCTCTCGATGTCATCGAGAAG 202760 36 97.2 35 ..............C..................... ACACAGACGGTGCTGGCGTACGGCCGGCCGGCCCC 202831 36 77.8 0 ...........C..C.............CCGCGC.. | ========== ====== ====== ====== ==================================== =========================================== ================== 81 36 98.9 38 CCTTCCGGGGCAGTAATGCCCCGGCCTCATTGAAGC # Left flank : TCACCTATGACATCGCCGACCAGAAGCGCTGGCGCCAGGTGTGGAAAGTGATGAACGGCTACGGGGAATGGCTCCAGTTGTCCGTCTTCCAGTGCCGGCTGTCGCGCAAGCGGCTGGTGCAGGTGCGCGGCGCCCTGGCCGAGATCATCGAGACCGGCGCCGACCATGTGCTGATCCTCGACCTGGGGCCGGCGGACGCGGTCAAGCCGCGGATGGAAAGCCTGGGAAAGACCGTCGCCGTGGTGGAGCGCACGCCGATTATTGTGTAGGCTTTTCGATGGTTCGGTTTGTGACTCGACCGCCGTGCTTGTGCGAGCGCTGGTGCGGCGCGCGCGACTCGCGGAGCGCTCGCAAACGCTTTTTGACATTGTAAAACAAAGCAGTAACAGGCGCGCGGTGACGCCCCTAAGCACCGTGGAACCCGAATCGACTCGGCGCTCTGGCGAGCGCTCGAAAACGGTGCTAAAATCCCAACCAGAGCCGCCGGTTACAGTCGGGAC # Right flank : CAACCCGAGGCGGGCATCAGCCCGCCGAAGGTCGTTGCGCGCTCAACAGAAAAACCTCTTCGGCGTTTGAAGTGGAATTGGGGGGCGGGGTCCGGGCCCGGCAGGATCGCTGCGCAGCGACAACGGCCCTCCGTTCGCGGGCCGGCGCGTGGCGAGGCTGTCGCACTTGGCGGTGCGCCTGATCAAGGCGGGGGTGCGGCCGGAGCGGATCGCGCCGCGCAAACCGTGGCAGAATGGCCGGCATGAGCGGATGCACCTGACGCTGCTCCAGAACACCGCCTCGCCGCCGGCGCGCAGCCTGCGGGAGCAGATGGGACGGTTCGCGGGCGTTCGAGACCGCGTTCAACGAAGAGCGACCGCACGAGGCCTTGGGACGGACGGAAACCATCGGCCTCGGTCGACCGGCCGTCGCTCAGGGCCTTTGACCGGGTTTTGCGGTCTCGGGCGTTTCCGTCGGACGCCCTGGTCCGCAGAGTTCGCGGCACCGGAGAAATCAAGTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCCGGGGCAGTAATGCCCCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.80,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //