Array 1 418-2102 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYB01000040.1 Neisseria meningitidis strain NM1928, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 418 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 484 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 550 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 616 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 682 36 100.0 30 .................................... TCGGTGATGACGGATGTGTCGGGTTGCGGA 748 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 814 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 880 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 946 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 1011 36 100.0 30 .................................... TCGGTGATGACGGATGTGTCGGGTTGCGGA 1077 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 1143 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 1209 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 1275 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 1341 36 100.0 30 .................................... TCTATGCCTGTTATTGTTTTCAGCCTTTTG 1407 36 100.0 30 .................................... TCGGTGATGACGGATGTGTCGGGTTGCGGA 1473 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 1539 36 100.0 30 .................................... TCAAATAGAAATACATACGCCGAGTAATTA 1605 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 1671 36 100.0 30 .................................... TCGGTGATGACGGATGTGTCGGGTTGCGGA 1737 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 1803 36 100.0 30 .................................... TTTCTGCCTTTTTACAAGCTCGCTTTCTTT 1869 36 100.0 30 .................................... TTTTAACTTTGACCGTGTGCAATCCAGTTA 1935 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 2001 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 2067 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCCCTTTCTCATTTCGCAGTGCTACAATTTAAAATAATAACCCAATACACGATGTTAAGTTGTAGCTCCCTTTCGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //