Array 1 534768-533507 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024599.1 Porphyromonas gingivalis strain KCOM 2800 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 534767 46 100.0 30 .............................................. AAAATATCCGACGTATAGAGCCTTCTGTCA 534691 46 100.0 29 .............................................. AAATTACCTTATAAAGAGTTACAAAAAAT 534616 46 100.0 30 .............................................. ATGGCGGACGCGCTGGTACAAGTTCGAACG 534540 46 100.0 30 .............................................. CCTCCTCGCTTCTTCGAGCTGGCTCTCGCA 534464 46 100.0 30 .............................................. GGAACGAACATTTCGTCCGAAAGCAGCTGC 534388 46 100.0 30 .............................................. CCAATAGAGGTATCCCCGTGTACGAAGAAC 534312 46 100.0 30 .............................................. AGCCGAGAGGATGGTTGTGTCGTCGCGACT 534236 46 100.0 30 .............................................. AGGCCGCAGGCGAGGTAAAACTTCACGGCT 534160 46 100.0 30 .............................................. AAACGACCTACATTTTATATCCGGGGCGGT 534084 46 100.0 30 .............................................. AAGAGAATTATCAAAGAAATTCTTTCCCCA 534008 46 100.0 30 .............................................. TCCCAACGCTCGTTGTTGATCCATTTATTG 533932 46 100.0 30 .............................................. CTGGAATCTAATTCGCAGGAGGTCGATTAT 533856 46 100.0 30 .............................................. CTGGTCTTTGGCATCATTGCTGTGATAGGC 533780 46 100.0 30 .............................................. GCGAAGGTGTGAAACCGTCCGAACCTCCGC 533704 46 100.0 30 .............................................. GAAACAGTCGACACCAACGAGCTGAAGCGG 533628 46 100.0 30 .............................................. GATACGGATAAGCTAAAAGAGAAAAAACTT 533552 46 97.8 0 ...........................................C.. | ========== ====== ====== ====== ============================================== ============================== ================== 17 46 99.9 30 GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCATTACAGATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGAAACTGCAGCCGACAGGAAACGTGCAGCAATCTTTCGGAAAAATCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATCAGACACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGGGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCAGCTATGGAGATCATTTGTGGGAAAGGAAGAGAGTATTATCAGCCACCCCTCCAGCTTGAACTTTTTTAAATATATTCTATCATCTTTTGTGGAATTAGTGCTTTTCGTCTGGGGCATAGAAATTAAAAAGCCGAGATTTTTCTCGGCTTTTCAGTTACGCACAGTTGTTTTTTTCTTACTCACAACCACCCTCTATGTCCTGTATTACAGGTGATTACTGGGGTTGT # Right flank : GAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACAAAGATGAGTTTGGAATGATTCCAAATAAGCATCCATGGAGAAGAAAAAAGCAAGGGAAAAGTGGAGGGAAAAGGAACTGCCACGGATCGAAATACCACTTAAAACAAGTGAGACAACGATCTGCATATAAAACATTTTCAATTTATATATAAATCGTTTTTGATAAATATATAGATCGTAAGTGATTTGTATATAAATCGTGGGCTCAAAAAAGCCTTTTCCGAAGCTGATATAAAAGAAGCACCCGCCGAGTTCTACGGAGAACTCCGACGGGTGCAGTCCAGATATGTATGTGGTGGGGCCTATGCCAAGATGCTATCTTGCTGCATGTGATTCGATGTAGCTGCACGATTCCCCTCTACAGTCTCGGACCGGATCGAGGACTGTCGCTGCTGTGCTGAGGGATCCGAATAGGAGCCTGTTCGGGCTTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1263923-1256394 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024599.1 Porphyromonas gingivalis strain KCOM 2800 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1263922 30 96.7 36 A............................. GTTATCCTCGCTGTAAACGATCGATGCTTGCGTATC 1263856 30 100.0 35 .............................. CGCATGACGGGGTGATCTCCGACGAATTGCCTCCT 1263791 30 100.0 37 .............................. AGAAACTGTTTGTAGTTCTCATTGCTCTCCTCCTTCC 1263724 30 100.0 36 .............................. CGGACGGAGGGGAAGCGGCTTTGCTCGCGCAAATAG 1263658 30 100.0 37 .............................. TCCAGCAAATGTGCTATTTGCCTTTTACGTCCTTTTG 1263591 30 100.0 36 .............................. CACCGCAAGAAGAGCAGCAGCCACCGAACCGCCGAT 1263525 30 100.0 36 .............................. CCGCCTCCACGCTTGCGCTCTCGAAGATCAAGCAGC 1263459 30 100.0 34 .............................. AAGTGCATTTCCGTCCGATAGAAACGCTGAAGAC 1263395 30 100.0 36 .............................. TCTAACCGCAAAACCAAAGACGCGGATGCGTCCCTC 1263329 30 100.0 35 .............................. CGCCGCGCAAACAAGCAACGGCCGCGGATCTGCAG 1263264 30 100.0 37 .............................. ATGCAGTGCTCCGATGGGAAAATTTCGTGAGAGACGG 1263197 30 100.0 36 .............................. CGAAGACGGCACTAATAAGTTTCTCGCTGATGCATG 1263131 30 100.0 36 .............................. CGCAAAGAAGGCGAAGGCAATCGCTCAAGAAATAAA 1263065 30 100.0 34 .............................. TATTTATCAAGGGGGCGAATCTGTCATTTACGAT 1263001 30 100.0 35 .............................. CTGGCCCTCCGCGCGAAGGTGAAAGGGCAATACGT 1262936 30 100.0 36 .............................. ACGGGCTTGATAACGACAGTCAATGCGAACTACTCA 1262870 30 100.0 34 .............................. GCGTAAATGTCAATAGTATCGAATACGCGATTCG 1262806 30 100.0 35 .............................. GCCATTTCAGCAGATGAAAAGATTTGCCTCGAAGA 1262741 30 100.0 36 .............................. ATCACAACGTATTGGTCGCCCAGACCGGCATTGCCG 1262675 30 100.0 36 .............................. GCACCGCGCCCAGCCTCCTCAAAGGACAGCTTATAA 1262609 30 100.0 36 .............................. CAAGAAGATGAAGAAGAATAAGTACACCCTGCAAGA 1262543 30 100.0 36 .............................. ATCTGACGCATCATATCCAGCTCTGTCGGCTCCTCG 1262477 30 100.0 36 .............................. GCGGACTTGAGATATTCAGAGCTGGTCAAGAAAGAC 1262411 30 100.0 36 .............................. TGAAGTCGGAGTACGAAAGAGGCGTCCGATCCGATA 1262345 30 100.0 36 .............................. AAGCGGCGATGCTCTACCTCGAGAGTGTTGCGCGCA 1262279 30 100.0 36 .............................. GGTTTATCTCCGTGACTTGAAGCTGTACGATGAGAA 1262213 30 100.0 36 .............................. AAGAAACGATGAACCCAGAAGTACTCGCACTCCTCA 1262147 30 100.0 36 .............................. TTACAACGGTTCAGCCCTTTGCAATCTCTGTCAAGA 1262081 30 100.0 37 .............................. ATTCAGACCCTCCAGCTCGAGAGATATTATATCCATG 1262014 30 100.0 34 .............................. CAATAGCAATGGGAGTAACAGTATTCATTGATAG 1261950 30 100.0 37 .............................. GTGCCCTGTATTCGTGTACATCACAGCGAATCGAACT 1261883 30 100.0 34 .............................. ATTGATGACAGAGATATACCGTCGCCGCAAATAC 1261819 30 100.0 37 .............................. TTTTCAACAACTCATGAATTTGATATCACGTATAAAG 1261752 30 100.0 36 .............................. ATCGCTTTCGAAAGAGAGAGCTTTCCACACCATCTG 1261686 30 100.0 36 .............................. AAACGTTCCCCGGCGGGGCTATTATGGTCTGCTATA 1261620 30 100.0 37 .............................. ACGGCCCCAACGGATTTCAGAGGCTTCCACCCCTTGT 1261553 30 100.0 36 .............................. CCTCAGTAGCTGACGTAACAGGATTTATCCACCACC 1261487 30 100.0 35 .............................. GAGAATATAATAGTATTAAATTTATTCTCGCTCAA 1261422 30 100.0 35 .............................. CACGTCTATAGACCCAAAGTCGCCGCCGTTTCCGG 1261357 30 100.0 36 .............................. CCAAGCTCGCAACGGAGAACCAGCCGCTTTTTGACC 1261291 30 100.0 36 .............................. GCCAAAGCGGATACAATGTTCAGAAACCGTTCAAAT 1261225 30 100.0 36 .............................. ATGCCTTCGGCATAAAAGTACTATTTATTTGAAGAA 1261159 30 100.0 35 .............................. AGGGCGCGAACGGCAAAAGCTATAAGTCCGACTAT 1261094 30 100.0 36 .............................. TGTCGAGTAATTCTCCTCCCCCGACGCTGTCGGAGT 1261028 30 100.0 34 .............................. AGTCGCACTCACCTTCGCCCGCGACAGCTACCGC 1260964 30 100.0 36 .............................. GCAACGGTCGAGGTGGAATCAAGTTTATCTATTGCG 1260898 30 100.0 34 .............................. TATCCACATTCGCAGCAAAGATGCTGCCCATCGT 1260834 30 100.0 35 .............................. TACATATCAACGCCCGCGACTTCTCCCTCCGCACT 1260769 30 100.0 37 .............................. ACCAAAGACTTCCTCGAAAAATTGGATGTAGATCAGC 1260702 30 100.0 35 .............................. TGAACTTATACTACAAAGAGTACACAAAAAAGGGG 1260637 30 100.0 37 .............................. GCGGTAAGAATAATGCTGAAAATCATAAAGAAAGGTA 1260570 30 100.0 36 .............................. AAAGACGTTAACGTTTTCACATTCGCCAGATTGTCA 1260504 30 100.0 36 .............................. AAGAACTTGGCGATGTGTTGTGGTACGTTGCTATAA 1260438 30 100.0 36 .............................. CGAGTTCCTTGTTGCAATTGTGGATGGTATCTCTAC 1260372 30 100.0 36 .............................. ACATCCACGTAATTAACACAACAATTATTACAACAA 1260306 30 100.0 36 .............................. AGTGCAAAGGTCTACCATCTTGACAGAGATTGCAAA 1260240 30 100.0 36 .............................. ACCCAACCCGTGTCAAGCTCTACAAAGAGACAAGCA 1260174 30 100.0 35 .............................. GGGCATAAACAACAAAGAATATGCAAAAAGAAAAT 1260109 30 100.0 37 .............................. GTAGCCGTCTCCACCTGCTTTGCCCCCGAAGCCATCT 1260042 30 100.0 36 .............................. ATAATCGAACAATTCAAACACAAAAGAATATGAAAT 1259976 30 100.0 36 .............................. AGCGATTATCAATAACCTGAAAAAACAGCTTAGCGA 1259910 30 100.0 36 .............................. AGGTTATCGAGTCTTACGGAAGTGAGGAGCTTCCGG 1259844 30 100.0 37 .............................. AAGAAACCCCTGTAATGAGGAACGATTCCACGATGTC 1259777 30 100.0 36 .............................. TAGTAATTCTTTCTGATGGCCTCATCCGATATGCTT 1259711 30 100.0 37 .............................. GGGTTTACCCTTGTTAGACGGGCGGATACTCTTGTTG 1259644 30 100.0 36 .............................. TATTCATTGAAAAAGGAATAAAGAAAGGCTGTCAAA 1259578 30 100.0 37 .............................. CGTAGCTCTCAATCTTTTCACTACATTTGCATCACCT 1259511 30 100.0 36 .............................. AGACGGGGCCTACCGTCACCAGGTGGACGGTGCGCG 1259445 30 100.0 36 .............................. TGCAGATGGCTTCGGAACAGAATCATCGCCATATCA 1259379 30 100.0 36 .............................. CCGAGCACAGAAATTTACAGCAGATGAATCCAAGCC 1259313 30 100.0 35 .............................. ACACAGCTGCCGTCCGCTCTTATATACCTCTTGTT 1259248 30 100.0 37 .............................. TTGAATTAGAGCTTGGAAGTAAGAATAAAAAGAATAA 1259181 30 100.0 33 .............................. TCCAATAGAAAGTCTATCCTATTCCTCCATCTC 1259118 30 100.0 37 .............................. CTAAGTGTTGGAGATTCTATTATTCTTAGTTTGGATT 1259051 30 100.0 36 .............................. CCTCTATCTGAGGCTGCTTCAAACTTACTACCTGAG 1258985 30 100.0 36 .............................. TTTCTCACCACCGATTCTATGTAATGATAAAAGAAT 1258919 30 100.0 36 .............................. GGCCACAAGAACCATATTGAATGTCGTAAACGTCCT 1258853 30 100.0 37 .............................. ACAAACGGACTAAAAGCAGTCGTTATTGTATTAGCTT 1258786 30 100.0 34 .............................. AAAATAATAGGATATGACCCAAAACGGAATCGTC 1258722 30 100.0 34 .............................. GCTGATGTGTTTCAAGTGTAAAACAGCCTTGTTC 1258658 30 100.0 38 .............................. AGTGGATATTTTTTCATGACTTGAAGAATAGCACCCAA 1258590 30 100.0 36 .............................. AAAGCATCGACACGGCAGCCGAAGCAGCCACCCGCC 1258524 30 100.0 36 .............................. TAGAAGCTCATCGCGTTCATTTCCACGCAATGAGCT 1258458 30 100.0 37 .............................. CCCGTTATACTTCCGACAAACCGGCAAAAATTCGGAC 1258391 30 100.0 35 .............................. ACAGCGTCAGTATGTCACATGAGTATTCTTCAATG 1258326 30 100.0 36 .............................. TTGTATCAATTACATACCTGTCGAACTGTCAAGGTT 1258260 30 100.0 34 .............................. TTGGCGTACTATCGAGTTGCCGGACTTGTGCGCG 1258196 30 100.0 35 .............................. TCCGCTTTCAGCTTGCTGGCAGCGAGGTTAGCTGT 1258131 30 100.0 37 .............................. ATTCCCCACAACCGAAACAGGCACACTCTCTTTTACA 1258064 30 100.0 37 .............................. CATATCATGTCTGATTTCCGCGCTAAGTTCTTCGAGC 1257997 30 100.0 35 .............................. CGCCGAGTACGAGCGAAAAGAGAACCAGCGAAGAT 1257932 30 100.0 36 .............................. TCTTCAGGGCAGTGTAAATGCACATAATATCACCCT 1257866 30 100.0 37 .............................. ATGAAGCAGCTGGAAAACAAGCACAAGGTGCTAAGAT 1257799 30 100.0 36 .............................. CTTTTTCGCCCGAGCCCCTTTACGATACTCTCTGCG 1257733 30 100.0 38 .............................. GGTCGGACCGAAAACGAACCGGGGCACGATGCCCAGGT 1257665 30 100.0 36 .............................. CTTTTTTCCACTTCCCTGTTGCGGGGTTGATTTTGG 1257599 30 100.0 35 .............................. ATTCTGATGAAAGAAGAAGTATTGATTGGAAATTT 1257534 30 100.0 36 .............................. AACCAGATGATGCCCTAACTGTTCCTGGATTACTCG 1257468 30 100.0 34 .............................. TATTGTATGAGCGAGGTTTATAAGGAGATTAAAA 1257404 30 100.0 35 .............................. TATCACCCAATTCTTCTCTAATAAAATAAATCAAT 1257339 30 100.0 34 .............................. TCCACAAGAGCATATTGATATTTAGTAAATGTCA 1257275 30 100.0 39 .............................. TGGAGAATAGGAAAATGAGAGAATATGATGAACTACTAA 1257206 30 100.0 34 .............................. TCTTGTGATTATATAAGCAATGCGGATATGTTCT 1257142 30 100.0 35 .............................. GATTTTCATCAACCGCTGTAAGAGACGATACTCTT 1257077 30 100.0 36 .............................. ATAAAACCCCTCTCCTTCTCCTAGCCCTTCTATTGT 1257011 30 100.0 34 .............................. AGAGTTTTCCTCCCAGAAGATAAGGACGAATGTA 1256947 30 100.0 35 .............................. TGAGGGAGTAAAAGGTTTAGGGATTACAGTCTTTT 1256882 30 100.0 36 .............................. CCTATGACGAAAACGGAGAGAGAATCTCCATGTTCC 1256816 30 100.0 34 .............................. GCCATAGTTAATCTTCACAATAGTGGAAGACTAC 1256752 30 100.0 35 .............................. TTCACGTTCGGGTTTAGAGCAGCTGAGTCTATGAA 1256687 30 100.0 37 .............................. TATCGTGATTCAGAGTTAAGTTCTTATCTCTTCTTAG 1256620 30 100.0 36 .............................. TTGAGGCCCTCGGAGTTTATAAAGAGGTGTTAGATG 1256554 30 100.0 35 .............................. AACCGTATATCTAAGATTGTTATATTCAACAACTT 1256489 30 100.0 36 .............................. AGAGCTTGAAAAAGCTTATAAGAAAATTAAGGTTCT 1256423 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 115 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : AAGCCATGATGAGAAATTATCGTGAGTATGCACCTGTAGAGCTCGGAGGTTCGCCCGTGCAGGAAATATTGGACTATGCTTCTCTCGAAGGAAAAGATTTCACAAGAGGAGAGAAGTTTTCACTCGATATGCCTACAACGAGCAATGTTCTTCAGTACAAGACCGAGGATGGCACCAAGGTTTCCATCCGTCCGTCAGGTACTGAACCGAAAATCAAGTTTTACATCGGAGTTCATTTCTCGGTCGCTAATGAGCAGGAATTAGACCGGGCCTATATAGTAGCAGAAGAAAAGATTGCTACCATCCTCCACGACCTCGGTGTCTGATCTGCTTTTTCGGCTATAGATTAAGATAAATCAAGGGCTGCACCACAAGGGACTCTCCCCTTTGGTACAGCCCTTAGTCTACTTTTTTATTTGTATGATATCCCCTATGCCTAAAAAACAAGCCAAATAACCCCGAAATTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGACTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGTGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 3 1296481-1295933 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024599.1 Porphyromonas gingivalis strain KCOM 2800 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1296480 37 100.0 35 ..................................... AGCGATTCGGCATTTAGAGAAAGAACAAGAAAAGG 1296408 37 100.0 36 ..................................... AAATCAATGAATACGTCTAATAAAACTGGCATTGGT 1296335 37 100.0 35 ..................................... CCGTTACCATGAACTTCCCGACTCCATTGCCTGAA 1296263 37 100.0 39 ..................................... TAACAGGAAAATATATTTGTTTGGTTTTAGGGCAAAAAA 1296187 37 100.0 37 ..................................... CTGGTAGTATAAAGATTCACATCTTTGAGAAATCTAG 1296113 37 100.0 37 ..................................... AAAAAACAGTCCATCCCCTTGTTCCTGGGTGTCCCGT 1296039 37 100.0 33 ..................................... ACAAAAGGCAGATCGTCTGAATTCAGACAAAAA 1295969 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 100.0 36 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : ACGAGCCTGTCCCCCCGAAAACGACCGAACTTTCCTTTACGGACAAATCCGCCTCTCCGAAGTTCACAGACCGGAAATGCTCGGATTGCGGAGCGTGTTTTCGGGAAAAGCGGCGCGAGAATTTTTTCGCTGTGGCGCGAGAATTTTTCACTTCCCGAACCAAAACGAAAAAGTTCCCGCGCCACGTTTTTCAGAGCATCGATAGTCTTCTCCAAAGAGTCCGTTATCCACTTTTATAAGACCGCTACACAACTCGCTTGTGCGTTTGGCATCCTCGTAGATGTGTGAATACGAAGGATGTTTTGAGTTGTTTGCTGTTGTTTTTCTATCGGTTGGACTCTCCCTTTACTCCCCATTCGGAGGTTTAAGCCTCCGAATGGGGAGATTTTTCGTCTATTTCACGCCATAGAGCACAGAAGCCCGGGCATGCGCTTAAGATTGTAGGCCATCGCTTCCAGAACACTCTGTGTATGCATTCGTTCTAACCCTCGGTAATCAGT # Right flank : TACTTGAGCGACTGCAAGTTACGAATAATCCCAAACGTAACGCATTGGCAGAGAACGATTCTATTTTTTTCGAAAATACAAGTTGAAAAATGCAGCTACAACACTATTTTTGCAGTTGAGCTGATTATATCTCATTGATATACAATGAGATTTCCTGATTTTCCGTTTTCGAAAAACAGGAGAAAAGAGTTGTTCTTGCAACCGACTGATAATCAATACGTCAAAGAGCGATGTGAGGTTCGATTTTTTTTCGAAAAACTAACCCACAATACTTTTCCTTTTTCTCCGGCTCTTAGGGAGGGTCGGATGTCCGCTCATCCAAGCAGCGGTGTAACAATGCTGACAGAGAGGAAGAAAAAACACCTTGTCTCTCTTGGCAGTCTGTGAGGTAACAGCCTCTACCAACTTGTCCATTGTCAGCTCTCGCAGGCTGCAGATGAATACCGACTTATTGATGCGTATACCACACTGCTCCAATATCCGTGCAACCTTACGTCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 1599117-1598684 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024599.1 Porphyromonas gingivalis strain KCOM 2800 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1599116 37 100.0 29 ..................................... GTTGATACGATTGGCAAGATGCTTGACTA 1599050 37 97.3 29 ....................................C AAAACAATTTATTGGAAATCTTCTAAAAA 1598984 37 97.3 29 ....................................C TTCTATTAAAGATTTCTTCAAATCAAAGG 1598918 37 100.0 29 ..................................... GAGGGACTTCGTGTCGAGAATGGGGAGAT 1598852 37 100.0 29 ..................................... GAGACAGGGAAATTTAGCCCGGAGCAGTC 1598786 37 100.0 29 ..................................... GAGAAGAAAATAGAAAGGAAGGCGGAGGA 1598720 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 98.8 29 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACA # Left flank : TATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : TACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACA # Alternate repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //