Array 1 40-189 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKRL01000303.1 Acinetobacter junii strain TUM15376 sequence303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 40 30 96.7 30 ............................G. TCTCAAAGAATCAGGTCAGATCGAACAAGA 100 30 96.7 30 .............................G ATTTTCACCACACATATTTTCTTTAAAGTT 160 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================== ================== 3 30 97.8 30 GTTCATGGCGGCATACGCCATTTAGAAATA # Left flank : TTAGAAACACACCCGAAGCTCTAAACGGGATCATGTTCCG # Right flank : TTGCAAACGCATTGGGTAAAGGTGTTGAAGGTTCATG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 54044-61873 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKRL01000013.1 Acinetobacter junii strain TUM15376 sequence013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 54044 30 96.7 30 .............................G TGATTAACTCATTTTCAACACGCCCAACGT 54104 30 96.7 30 ............................T. GACGCGTGTCTAGTTGAATACCATATATGA 54164 30 96.7 30 .............................G TTGCAACCAGTACAACTACAGGAACTGTGA 54224 30 100.0 30 .............................. GCCGTAAACCTGAATATTGGCAGTAGGAGA 54284 30 100.0 30 .............................. CCGATGAAACCGTTAATTTTGGATCAACAA 54344 30 96.7 30 .............................C AGAAGGCAAGTTAGCAATAGCACCACGCAC 54404 30 96.7 30 ............................T. TGGTTTCCTCTGGTCTAGCACTCGTTAACG 54464 30 93.3 30 ............................GT TAAATGAACAACCCGTACCAGCTTTTACAA 54524 30 96.7 30 .............................T ATTGTGTTCAAAGTAGTATTGTTAATGGAT 54584 30 100.0 30 .............................. CAGATGACATCACAGATACTTCTGTTTCAT 54644 30 96.7 30 ............................C. TGACAGTCATCCCCGATAGAGCGTAAAAAT 54704 30 100.0 30 .............................. TGCGTAAAGCCTGCATAACAGCAGCATGAG 54764 30 93.3 30 ............................GT CCAACCATCTTTTACAATCGGCTTGTGAAA 54824 30 96.7 30 .............................T ATTTCCCCCTAAAAGCTAAGCCCCCGAAGG 54884 30 93.3 30 ............................TC AACACGTGTCCACATGCTGTCAGGATCACC 54944 30 100.0 30 .............................. ATATTTGTTTAACAACTTCATTTAAAGCTT 55004 30 100.0 30 .............................. TCGAAAGGCGAATCTATAGAGCTTGATACT 55064 30 96.7 30 .............................T AGGTTTAAAAAAGTAAGTCCTGGGGGAACG 55124 30 93.3 30 ............................GT ATCTGTACTAGACATGTCAGACCGATTATT 55184 30 96.7 30 .............................C GCCCATAAGCACGATGTAAATGATAGTGCA 55244 30 93.3 30 ............................TG AATCTGTTTTAATTCTTGAGGGTCTGGAGA 55304 30 96.7 30 ............................G. TGCGCAAAGCTTGCATAACGGCAGCATGAG 55364 30 96.7 30 ............................G. TATGAATACATAGATGAACATTGGAGAAAG 55424 30 96.7 30 .............................C AAGAAGACAAACGAACAAATGACCGTTCTT 55484 30 96.7 30 .............................G CTAAGCCACCCCTAAAAGCTTTTGCTCTGT 55544 30 100.0 30 .............................. TCTTTCCTGCGACCACCGCTTTAACTTCCT 55604 30 96.7 30 .............................T TATGAAAGAGCGCAAGCACATCATGGATGA 55664 30 100.0 30 .............................. TCCCCACCGTACTTGCGAGCACGAGCAACC 55724 30 93.3 30 ............................TG CACTCTCCTGAGCACTGATCGCCGCAATCC 55784 30 96.7 30 ............................G. ACAGCGGTGATATAGGCGGCATCCTGCAGG 55844 30 96.7 30 .............................T CGGAAGAATCTCGCCCTAGTAAATTGTCCG 55904 30 96.7 30 .............................T ATTCAGGAACAATGATGCACTCGTCAGTAA 55964 30 96.7 30 .............................C ATGGGATGCTCACGACATAGAAAAAGCTAA 56024 30 96.7 30 ............................G. CATTTGGCATTCGTTTGGCTGCTCACTTTG 56084 30 93.3 30 ............................TT GCAGGTGATCGTAACGTGAACAATATACCT 56144 30 100.0 30 .............................. AAGGCATAAAGTTTAGCGACATGCCATCCT 56204 30 96.7 30 .............................C CCCCGAAGAAATCGCAGCAGGTCATCGTAT 56264 30 96.7 30 ............................T. AGAATGCTTTGGTATTCTTTTAGGGATTTT 56324 30 96.7 30 .............................T ATATGGAATTTAGTTTATCAAAGAAGTCTT 56384 30 96.7 30 .............................T GCCGACATCAATCCAACGGCTATAATCATC 56444 30 93.3 30 ............................GT GAAAACTAACTATCCTTATCTTCCATGATT 56504 30 100.0 30 .............................. TCTTAGAGCACATATTTGGATTTAATACGA 56564 30 96.7 30 ............................T. GTTCAGAAGCTTTTTGAGCAGTTGTAGCAA 56624 30 96.7 30 ............................T. AGCAGGCAGAGCAGAGGGGGGCATGGAGTT 56684 30 93.3 30 ............................TG AAAACAACGACTGGAGACAAACGCCCGACG 56744 30 96.7 30 .............................G TATTTCAATGCAAAGCAACGCTTAGAAATG 56804 30 93.3 30 ............................TT GCCACAATTCATTAAAATCATGCTCTATGC 56864 30 96.7 30 .............................C GAGCAAGAACTTTCGATACTTGGGAAGCGT 56924 30 96.7 30 .............................G TGATCACAGCGTCAGTTGTAAATTTCATGT 56984 30 100.0 30 .............................. CTGATGACATTACAGACACTACAATTTCTT 57044 30 96.7 30 ............................G. GCAGATAGAGCACGATGAATAATAAAAAAG 57104 30 100.0 30 .............................. TCAACTGTTCAACGGCAATTGATAGAGCGT 57164 30 100.0 30 .............................. CAAAAAAAAGCTGGTTCACAAGTAGCTACA 57224 30 100.0 30 .............................. TGCAGAATCAGAAACAGACCAACAAAAAAA 57284 30 96.7 30 .............................T CTGATAAAGAAACGTCGCCAAATGCGGTAT 57344 30 100.0 30 .............................. CCCTTTCGAGCCAAAGCGCAACCTGTGCCG 57404 30 93.3 30 ............................GT GCTCTCTCCACCCCACCGCAACTGCATCAG 57464 30 96.7 30 ............................G. TGTAGGTACGCCACCTTTTGAGCCGATAGC 57524 30 96.7 30 ............................G. CCAGTGAAACCATTACACCTGCAGGAGAGC 57584 30 93.3 30 ............................TG CCAATCCCTGCAGGAATGCACCTGCGCCAA 57644 30 93.3 30 ............................GC TTCCTGTGATCTCTAATGCTATTGGGTCAA 57704 30 96.7 30 .............................T CCAGCCATTTTTGACAGTCTGCTTGTGAAA 57764 30 96.7 30 .............................G TGTAGAGGTCAAAAGAATTGATCATTTGTG 57824 30 93.3 30 ........................T....T GACTATACAATCACGCTTAAACAAAGACAC 57884 30 96.7 30 ............................G. TACATTGGGAACTAGACTTTTCCGCTTGGT 57944 30 100.0 30 .............................. TAGTTAGAGTCCTACCCTTTCCATTGATAC 58004 30 96.7 30 ............................T. GTTTATTAAAGACAGCAGCAACAACAATTA 58064 30 93.3 30 ............................TT GAGTACCTTCATATTGTGTTAAGTAACACA 58124 30 96.7 30 .............................G TTAAGTAAGCTTGCTTCTTCCATTTTTAAC 58184 30 96.7 30 .............................C ATCGCCCAAACCACGTGCAAAAGCATAGCG 58244 30 96.7 30 .............................C CAAGACCAGCAAAGGCGTTTAGCACTCTTA 58304 30 96.7 30 .............................T ACATGCAGCGCTAAAAATAGTTTGAGGATC 58364 30 93.3 30 ............................TT TTCGCGCAAAGCTTCTTCGAGCAGTTCAAT 58424 30 93.3 30 ............................TG CATCTGGTGCCGTGGTAACGCTTGCATCGA 58484 30 93.3 30 ............................TG AACAGGCCAAAGCGCAAATTATGCAACTTG 58544 30 96.7 30 ............................G. TTGAAGCACGTGATTTGCCTAAACTAAAGG 58604 30 96.7 30 ............................G. GAGAGTATCCAAGCAAGGAACAAGAAAAAG 58664 30 100.0 30 .............................. TTGTTGCAGCAGCAGTAACAGCAAGACCCA 58724 30 96.7 30 ............................G. TGGTTCGCCGAATCATTGGAACGGATGGTG 58784 30 93.3 30 ............................CT GCCATGAAGTCAGCGCTTGTAAGTGTTGTA 58844 30 96.7 30 .............................C ATATCCAATCGGATCACCACTTGGCTTGAC 58904 30 96.7 30 .............................C TTGACGAAATTTGAATACATTTGAGTTTCG 58964 30 96.7 30 .............................G TACATATATAACTAAGAGAAGATTGAAAGG 59024 30 96.7 30 .............................T GACTTAGTTCGACTCAAACGCCCATATTTT 59084 30 100.0 30 .............................. CACCTAAAACATTAATTTGCGTTTGGAGAC 59144 30 93.3 30 ............................CT ACTTTGAAAAGCGGACTAATATGATTCTCA 59204 30 100.0 30 .............................. TGTCATATTTATATGTTTGCCACTCGCCCT 59264 30 93.3 30 ............................TG CTGCATCACTTCCAGTCACAGGCTTACAAA 59324 30 96.7 30 .............................C CAGTAAGAGCGACCACGCCACCACGTTGAG 59384 30 100.0 30 .............................. ACAGTTCAATTAGGTCAAGCATTTGAAATG 59444 30 93.3 30 ............................TC ATTAAGTCAGCATTTAACTACTATCTAAAA 59504 30 96.7 30 .............................T AGTTTCTTTTTTAAATCGCTTGACCCACCC 59564 30 96.7 30 .............................C TGTGTTTTGTAAGCTTACGAAAGCGAACCT 59624 30 96.7 30 .............................C GTGCTGAGTAGTTATATCGCAGAGCATCAA 59684 30 93.3 30 ............................TT CTCAAGTAAATATGCAAGGTATTGAGCAAG 59744 30 100.0 30 .............................. TCGTACTTGCTGACTTTAATTTTCACGGTA 59804 30 93.3 30 ............................TG CTGGTGACCGTTCAACCTTGATCACAAGCA 59864 30 96.7 30 .............................G TGATTGAAGTTTTCAAAGACTCATTGCTGC 59924 30 100.0 30 .............................. GTTGCAATGCTGGCATTAAGTTACCTTGAT 59984 30 100.0 30 .............................. TTACCTGAAAACTTTACAATCCAAGTAAAT 60044 30 96.7 30 .............................G CAGGTCAAATCATCCTTTCAGCTTTTGGTA 60104 30 96.7 30 .............................G CAGCGCCACCTCTAAGAACTTTTGCTACTT 60164 30 100.0 30 .............................. GGAGGACTTTTTTTGCAAAGTTAGATAAAA 60224 30 96.7 30 .............................T AAGAAAACGTCAGCATGACCACGACCGTAA 60284 30 96.7 30 ............................C. CACCCGAAGCTCTAAACGGGATCATGTTCC 60344 30 96.7 30 ............................G. TCTCAAAGAATCAGGTCAGATCGAACAAGA 60404 30 96.7 30 ............................G. TTAGTACAGATAGCGCTATGTCAGCACCCG 60464 30 96.7 30 ............................C. AGAGCAAAAAACTGGAAAATTAATTTTTAT 60524 30 96.7 30 ............................T. TCATTACTTAGATAAACTGGTATATGACAA 60584 30 96.7 30 .............................T AGACAGTGACGCTTTTACCCGTAATTTCCT 60644 30 93.3 30 ............................TG ATTTTCACCACACATATTTTCTTTAAAGTT 60704 30 96.7 30 ............................T. TTGCAAACGCATTGGGTAAAGGTGTTGAAG 60764 30 93.3 30 ............................TT TTACAAACCAACGCTCGACTTCACCCTTTT 60824 30 96.7 30 .............................G CCAATGCTTTGTGGTTTAAAGCTGTGCCTG 60884 30 96.7 30 .............................T AATAATCATTATTCGCAGGGAGGACCCCAT 60944 30 93.3 30 ............................TT ATGGTGATGCTAAGATTGACATCAATGGTA 61004 30 96.7 30 .............................C AAACAGACACTGAATTAGAGTTCAACGATC 61064 30 93.3 30 ............................GC CAACGGTTGCACCTAAGCCATATGTTGAAA 61124 30 96.7 30 ............................T. GCGAAGTTGAAGCATAAGCAGAGTTAAAAG 61184 30 96.7 30 ............................T. CGTGACACGCCCCACGCTACGCACACCGAC 61244 30 93.3 30 ............................TT GCCAAGAATCCAAACGGCAAAGTTATTCCA 61304 30 96.7 30 ............................T. TCGCACTGGGGCTAAACCGAATGTATCTTG 61364 30 96.7 30 ............................C. CAACGCATCTTGCATTCAAGCCAACCACTC 61424 30 96.7 30 ............................C. TTAAAAAACCCTCCGAAGAGGGTTATCAAT 61484 30 96.7 30 ............................T. TTTAAAACCAATTGTTATCTCTATGGCTTC 61544 30 93.3 30 ............................TC ATGCAGCTTAGTGAGCAGGAAGAGGATAGA 61604 30 93.3 30 ............................TT ACAGCGCAGGGATGTGCTGCGGGTATAGTA 61664 30 93.3 30 ............................TG TACATACTGGATCGAGTGGAACAGCAAATC 61724 30 96.7 30 .............................G CAATTCATGGTATGGGTTTTATTAGCGAAT 61784 30 93.3 30 .............C...............T AAAGCAATATTGACCAATAAAAGTAAGCGT 61844 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ============================== ================== 131 30 96.4 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : GTAAATGGCTAGAACGATTCATTGATTATGTTCATATCATTCAACCGAGAGAAGTACCTCAAGCTAAAGTTACTGGTCATGCACACTATTATCGAGTCAATCCAAAGATGAGTGTTGAAGAGCGTATAGTTCATCAAGCGCAACGTCGAAATATTTCTTTGGATGAGGCTACGCAGCATTTTAAACAATATATTGAAAAACCTATTATTGAGCCTTATGTGAGTTTAAAAAGTCTGAGTGCAAAACGAGATCAAAATATAGATCGACCATATCGTTTATATATTGGTAAATCTCTAGTTGATGAGGCAAAAGATGGAGAGTTTGGAACGTATGGACTAAGTCGAATGGCAACAGTTCCAGAATTTTGACCCAATATTTTTTTACTATTTAACAGCTTAATAAAATCAATAAGTTACACCAAGTCGTTTTTTGATTGGGTAAATTGCTAAAAAACCATCATAAATACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : ACATGTGATTTATTCATATGAGCCATTTAGAAATGTAACGGTCTTGATTGGCATTTGTTCTGTGTGTTCATTACGGAATTTATTTTAAGAATTAATAAGTGACTTATAATTCTTGTTCCAAAATTATCGTGTTATATGTCATTTAAAATACATAACATCAAGAAATATGATTCTTACTACATTCTAGATCTTTAATTTTTAAATAAGAAAATATACCCTGAAACCAACGTTTTTTTAGTAAAATTTTCATGCGCGGTTTATACCTCATCACCAATGATGATCCCATTCAACTTCTTTTAGAAAAGTTAGAGGCTGCACTAGCTACTGGTCATATAGCTATTTTGCAATATCGTCGAAAAAAAATAGAAAAAATAAATCAACCATCTGAAGTGGAGTTGATCAAAGTCCTTTGTGAAAAATATCAAGTCCCTTTTGTCATTAATGATGATTTGGCGTTAGCAGAACAATTTGGTTTAGGTGTGCATCTAGGGCAGTCCGAT # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //