Array 1 4481-2866 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSRX01000148.1 Staphylococcus pseudintermedius strain 13-13613 Contig_145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4480 36 100.0 30 .................................... CGATGACAACATTCAAGCGCATTACTACGT 4414 36 100.0 30 .................................... TGATGTACGACAGGAATATATTAGGGTTGT 4348 36 100.0 30 .................................... TGATGTACGACAGGAATATATTAGGGTTGT 4282 36 100.0 30 .................................... AAATCAATAGTCATAAATATCAATTACCAA 4216 36 97.2 30 .....G.............................. GTGCTTGAAACTAGTTATAGCAACGCTTTA 4150 36 100.0 30 .................................... TAATGTAGATTTCTTTGGTCAATTACGAGA 4084 36 100.0 30 .................................... ATCTTTACATGTTTAGTTGACAACCACTCG 4018 36 100.0 29 .................................... GTGAATGCTTCGTAAGTTGCATTACCTTG 3953 36 97.2 30 ............................A....... ATGCTGTACGATAGAAACATTTTAGGTTTG 3887 36 97.2 29 ............................A....... ACGATGGTCGTATCATTGATTCCAGCGTG 3822 36 94.4 30 ...................A........A....... GAACGTCCGTACATTGTTGCAGCCGCATCA 3756 36 97.2 29 ............................A....... AGAAATGGTTGAAGAACAACTAGCAGTAG 3691 36 97.2 30 ............................A....... TTGGTTTGCCCACTTAGCTTCTTTCGACAC 3625 36 100.0 30 .................................... TGTACGTTCAAACACAACCGCAACATCTGG 3559 36 100.0 29 .................................... AATATAAAAGGCGCTAAGAGGCGTTATAT 3494 36 100.0 29 .................................... TACAACGCTTTTGTATGGAGCAATACGGT 3429 36 100.0 31 .................................... CGTCGATTTCGACATAATCAATCGCCTTATG 3362 36 100.0 30 .................................... TACAAGAACTGATTAAATGCTACTTCTGTT 3296 36 100.0 29 .................................... GAATTTTGCAGTCCTAGTAAGCGATAGCG 3231 36 100.0 30 .................................... TGAGCCTTTATCATTTAGAACAGCTAGAGT 3165 36 97.2 29 ............................A....... GGACAACAACAAGATATTGCTCAAGCCTA 3100 36 97.2 30 ............................A....... TTTCCTTCGTGATTTCTTCTTCTACTTCGA 3034 36 97.2 30 ............................A....... AATGCACGTGCTGTTATGGTGAAAGGCTAT 2968 36 94.4 30 ...........T................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 2902 35 83.3 0 T........T................-.CA.C.... | CT [2869] ========== ====== ====== ====== ==================================== =============================== ================== 25 36 98.0 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : GTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTTGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGA # Right flank : CTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //