Array 1 1557186-1560793 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009240.1 Megasphaera elsdenii 14-14 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1557186 32 100.0 34 ................................ AGAGTGGTGGCACCACCATCGATGGCGTGCCTTT 1557252 32 100.0 35 ................................ ATCAAAACTGTCACTGCATAACGGATACGCGTTGA 1557319 32 100.0 36 ................................ ATCATCGGCGGAAATAACTTCCGGATCTTCTTCGTT 1557387 32 100.0 36 ................................ CAGGTCAGCTCCATGTGTAAAGCCATCGCTGATTTC 1557455 32 100.0 35 ................................ ACTATTAATGATAACGTTATGCGTCACCGTTACAA 1557522 32 100.0 36 ................................ AATGTAGCATTTGCAAGCAATGCATATTATGTCAAA 1557590 32 100.0 36 ................................ TTGTCTTTCGTCGGGTCGAAATCACAGATTGCCGAG 1557658 32 100.0 35 ................................ CAAATAGTTAGCTACGATTTGAGTGTTAATGATTA 1557725 32 100.0 36 ................................ GACAAGCTTGACGTTTACTTTGGCCCAAATTAATGC 1557793 32 100.0 34 ................................ AATGCCTATGGCAACCTAGAGTCTGCCAACTGTG 1557859 32 100.0 35 ................................ AAACAGGCTTGTGTCGTGTGTGGGGAACACTTTAA 1557926 32 100.0 34 ................................ CGAGCGGCAAAAGCGGCTGTGTTTGTCATAAGAG 1557992 32 100.0 37 ................................ GTAGAAGATTGCATGAAGCCTGAACGTGGGGTACAGC 1558061 32 100.0 35 ................................ CCTTCCTCGCTTATGGTGACTATAGACTCGCTCAT 1558128 32 100.0 37 ................................ CCTGTATCATTTCCGCGGCCTCTTTGCCCCGGAACGA 1558197 32 100.0 35 ................................ ACACACCTGCTAAGACAAAACGAAGTAAGTATGAA 1558264 32 100.0 35 ................................ TCAATCTCGCGCGTCTTGTGATTTGTGCCATCCAC 1558331 32 100.0 35 ................................ ATCGCCGGCGACATGTTAGTAAATGCGTCAGCTAC 1558398 32 100.0 35 ................................ GTGAATGCGACGTAGCGCTTAAAATAGGGTCGGTC 1558465 32 100.0 35 ................................ AAAGCCGGGACGGACGAATTGAACCCGCCGGACTG 1558532 32 100.0 35 ................................ TTTTGTCTACTATAAAGAACACTTGTTTGGTTAAT 1558599 32 100.0 35 ................................ TCCGTCCGTGACGCTTGCTAAGAAAGCCTCTGAAT 1558666 32 100.0 33 ................................ TTTCCCCCACTGCTTACGAGCAAAGTAATCGAA 1558731 32 100.0 37 ................................ TTATCATCGTATTGGTGATAGTGTTCCAGCCAAGAAC 1558800 32 100.0 35 ................................ ATCGGCTGTGACCGTTTTATCGAGCGGCATGATGA 1558867 32 100.0 37 ................................ CCCGGCCATCGTCGCGACACGATGCCGGGGATACGCA 1558936 32 100.0 36 ................................ ATCGGCCCGGGACAGGAAGAGCTATCGTTTAAACTC 1559004 32 100.0 35 ................................ AGCCTGTTCCGTTGCTGTGGGAGCAGGAGCCGCAC 1559071 32 100.0 37 ................................ TGATGATGACAACAACTTTAGAAAGAAGCTGTTGCCC 1559140 32 100.0 36 ................................ ATCAGCATCACTATTGATAATCTGATTTTCGTACTC 1559208 32 100.0 36 ................................ ATTTGCCGGGCCAGCTCGCCCCATGTCATGCCCTGT 1559276 32 100.0 35 ................................ TACGTCATCTGCGATCAATATGTCTGCACGACTCC 1559343 32 100.0 36 ................................ GCCGTCGGCTACCAGCAAGTATAGAGCCATGCCGGC 1559411 32 100.0 35 ................................ GCATTGGGGAAGCTCCTGTTAATAGTCTGACAGAG 1559478 32 100.0 37 ................................ GCCAGTGTGGTGTACTGCTTGATGAAGTAGTGGATAG 1559547 32 100.0 35 ................................ ATCTTCGTCAACGCTATATCCGCATCACACGGAGC 1559614 32 100.0 36 ................................ ACTTTCGCTAACGATGCCGCCGGACGTCAGCGTCGC 1559682 32 100.0 36 ................................ AAAACGTTGAGCGGGCCGATGAAGAGCCTGGCAGCT 1559750 32 100.0 36 ................................ AATGCGAACTATCAGAAAGACAAGGAAAAACTGGAC 1559818 32 100.0 33 ................................ ATCCAAGTTGTCGATGACGTAAAGGGCAACGGC 1559883 32 100.0 35 ................................ CGTTCCTGCCAAATCAATACAAGGGACTTCGTTGT 1559950 32 100.0 35 ................................ ACCCAGCCAGGAACAATGATTGTACAAGGCTTTGG 1560017 32 100.0 35 ................................ ATACGTTAATCCTCCTTACGCACCGGGCGTTGTTA 1560084 32 100.0 36 ................................ TCAAAGACAGCCCCGCCGGTGCCGGTGACTTCGCCC 1560152 32 100.0 35 ................................ TTCCAAAACCCTTATGTGTATTGTCTTTCGTAAGA 1560219 32 100.0 35 ................................ AATCGCACGCTGTCTTGATCGTGATATCGTGTAGC 1560286 32 100.0 36 ................................ ACCTTGCTTTCGATGAACGTAATGTGCACCTTGAAT 1560354 32 100.0 36 ................................ AAGATGATAATTACGAACATTTACACGATATTACCT 1560422 32 100.0 37 ................................ AGCCAACACCTCCTCATCGAAAACGCTTCCACAGCAA 1560491 32 100.0 36 ................................ CCCGGAGCGGTACGCCAAGTCCAGCAGCCCTTTGTA 1560559 32 100.0 37 ................................ TTTAAATTGGAGTTGGGGGACACGGCAAAACAGCAGG 1560628 32 100.0 35 ................................ ATACGGGTCCCACGTTTTATATTTAGTCGCCGTTT 1560695 32 100.0 35 ................................ GGCGGTCGCCACGGACACGAGTATTGAAGCGGAAT 1560762 32 93.8 0 ..............................CG | ========== ====== ====== ====== ================================ ===================================== ================== 54 32 99.9 35 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : GTTATTCAGCTTTTGGCCGGTTTCCTTATAATAGTCAATGCGGTCACTCAGCATCTTGTTGTAGATGAATCGGACACACCCAAAGGTCTTGGCAAACATCATTTTCTGTGCCGTTGTCGGATAGATTCTGTATCGGTATGCCTTATTCACTATCATCACCTGCCTTGACTTTCTATATACTTTCACTCTTACTACTGATTATACTGCAAATCAACTTGTGAAGCTATTGTTTTTCTGATGGCATCGAGCCCTCAGAAAAACCTGCAATTCATCTCACCGCCTAAAGAGGCGGGAGACTTCTTGCAGAATCAGGTTAAACGTAGGAAAGAGGGGGTGCGAAGCCGTATCACACATAAAATATATCAGAGCTTCGCACCCGGCTTGATTTCTATAAAAATAAGCAATACCCGGAGAATTGACTCAAAAATTGAACTGCTATTCAATCAGTTCGCAATATGATTGATGAGAGAGCAGATAGTGACTGAGCCAATTTGAAGGCC # Right flank : GCTTATCCTGTTTGTCATCGGAACGGCCTTTTTATCGTAGTTTCGCCAGAAGACTCCTTCCTCTTAGGTAGGGGATGAATGGCGATGGATTTCGCAGGTTCGATGCCTGCGAAATCCACCCTATGTCTTTTCCATCTTAGCCTTTTCACTTCGTCTACGGTATAATGGTAGATAACAGAGGAGGTGAATCCTAGATGTACTTGACGCAATCAAATGTCATCCGCGGCTTGTCGAAACAAGACTATACGATGCTCCGGGAAATGTGCCAATGCAGCAATAACCTGTACAATGTAGCGGTCTATACGATTCGGCAGCATTACTTCGATACCCAGCAATTCTTGCGGTACGAAAAAAATTACCCCATCTGCAAGAAAAATGAAAACTATGGCTTGTTGCAGGCCGGTGTCGCCCAGCAGATATTGAAGATGGCCGACCGCAGTTTTCGTTCTTTTTTCGGGCTTTTGCAGAAAGTCAGGTCAGGTGACTATGGTTCAAAGGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //