Array 1 4205662-4204850 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP018228.1 Rhizobium leguminosarum strain Vaf-108 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                                                              	Insertion/Deletion
==========	======	======	======	================================	=============================================================================	==================
   4205661	    32	  93.8	    33	..........A.............G.......	TTCGCGGGCGTACAGGTGCCACAGTGGACGAGT                                            	T [4205653]
   4205595	    32	 100.0	    36	................................	GCCCATGGCTCGCCTGGAAGTCCGGACTCTCGCGAG                                         	C [4205588]
   4205526	    32	  90.6	    34	.....T.....TA...................	AGCGGCGCGGTGGACAAAACACCAACGCACCGGC                                           	C [4205519]
   4205459	    32	  93.8	    36	......C.......A.................	TGCCATATGTGCCAGCACATCGGTCTGGCTGGATTG                                         	G [4205452]
   4205390	    32	  87.5	    34	............A...G......T..T.....	GTTCACGGGACGGACGAAGGCGACAACCAGGTGT                                           	
   4205324	    32	  84.4	    35	....T....C.GA.....A.............	AACAAGCTGGTGTTCAGCCAGCAGAACGTCCGTAA                                          	
   4205257	    31	  93.8	    77	.C...................-..........	AGCGGCGGCTGTTGCACGTTGATGGCTCATGCGTCACCTCCTTATACCAGGTAACCCTTTCATAAGGGCGGGGCGCC	C [4205251]
   4205148	    32	  81.2	    34	A.G.......C.A..A...T............	TACGAGCGGATCGGCTTCAACGAAAGGTAGATCG                                           	
   4205082	    32	  93.8	    35	.....T......A...................	CATACGGGCGACTGGAAATTCGACGCGAACCCGGT                                          	
   4205015	    32	  87.5	    36	.......TT..TA...................	AGACTGGAGGACCTGGCCTACCAATATTCCGAGGAG                                         	
   4204947	    32	 100.0	    34	................................	GTCATCCAATCCTGCTGTGCGCCGAAAAAGGCCT                                           	
   4204881	    32	  84.4	     0	.C........AT..T........A........	|                                                                            	
==========	======	======	======	================================	=============================================================================	==================
        12	    32	  90.9	    39	GTCGCCTCCTGCGCGGAGGCGTGGATAGAAAC	                                                                             	       

# Left flank :   CCGGGTCCACCGCAGATCTGAAACAGCGATTTGCGACTCACAATGCCAGAAAATCCGCCCACACTGCCAAATTCGCACCATGGAATTTGCTCTGGTACTGCGCCTTTCCCGACAAGCTCAAAGCCCTTGAATTCGAAACATATCTGAAATCGCATTCTGGCAGGGCTTTTGCCACCAAGAGATTGGTCCAGCCGAAACTGGATCCGGGTCGTCTCGCCAATGGGAAGATCGATTCTGAATAAGCGGCGGCGCGTGCCACACGCGCAACATTTCGTCGCTACGGATCTTGGTGAGTCGCTGTTTATATTAGCCGATGGAGCAGTGCGAACCGCAAGCGTGCTAACCGAACCGAATAGGTTTACACCTCCTCCAGTTCATTGAAATCGTGAAGAATCCCCATCTGGACTTGTTCCCAAACTCGATCAGGATAGAGCTTGACCCTGCACGCGCAAAATCCTCTGCCTTTCCTTTCGTTTTCGAGAGGCTTAGCAAGAGGCAGT
# Right flank :  TACGCCTACCGCTAGATCCCCGGCAAACTGATCGGCCTCAGCTCCTGCGCGGTGAGTAAGGGAACTCAAATGGACTATTTTGCTCACTCTGGAAAAGAGCCAGACAAAAGCGACTGGCAGATCTTGAGCGAGCATCTGCACGGCGTTGCAAAGATGGCGGCGGAGATGGCGGCGCCTTTCGGACTGGAGCGGGCGGCCTATATCGCCGGGCTTTTCCATGATCTCGGAAAATACAAGCCGGCATTTCAGAGGCGCCTGGACGGGGTCGAGATAGGCGTGGATCACTCCACCGCTGGCGCCAGCCTGATGTTAGGTGACTTCGCCACCGGGCTGGATAAAGGCATGGCCGAGCTTGTTGCATATTGCATAGCCGGCCATCATACCGGCCTGCCGGATCGTAGGAACGCTTCTGCCGCGTGCCTGGAGCAACGGTTGGCGAAAGACGCAGAGCCTCTGGACGAGATATGGAGGACGCAGCTGACGTCAAACGCCAAGGGTCT

# Questionable array : NO	 Score: 4.81
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.28, 8:1, 9:0.29,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCCTCCTGCGCGGAGGCGTGGATAGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.80,-8.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [11-15] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,5.51   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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