Array 1 119715-120780 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBM01000006.1 Salmonella enterica subsp. enterica serovar Indiana strain 73-2927 NODE_6_length_199167_cov_3.08684, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119715 29 100.0 32 ............................. TGTAACCACTGCGATATGGGCGATGACACAAA 119776 29 100.0 32 ............................. CGGGAAGCGCAGCAGAACGCCCGGTCGCAGCG 119837 29 100.0 32 ............................. ATCACCGGCACGCGCGATAACGGGTCTGATTA 119898 29 100.0 32 ............................. CCGAAAATTACCGGGCAGTCACCGTGGGGGCA 119959 29 100.0 32 ............................. ACGATCCAGATATTTGGCTGGATGCAATCGGT 120020 29 100.0 32 ............................. CCCCATCGGTAACCTCTCACTATCGGTGTGTC 120081 29 100.0 32 ............................. GCTTTTATGTCTGGTGGATATAACGCACTGAA 120142 29 100.0 33 ............................. CAAAAACAGGTAAATTTGTTCGCTTCGTCAAGC 120204 29 100.0 32 ............................. CGTATCCCGAAATCACGTTCAAGAAAAATCCG 120265 29 100.0 32 ............................. CCGTTGATCAGAACGGCAACGAACGCACGTAC 120326 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 120387 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 120448 29 96.6 32 .............T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 120509 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 120570 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 120631 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 120692 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 120753 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 137322-138695 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBM01000006.1 Salmonella enterica subsp. enterica serovar Indiana strain 73-2927 NODE_6_length_199167_cov_3.08684, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 137322 29 100.0 32 ............................. AGCACACATTGTGTGACGGTCGCCGTCTGGTT 137383 29 100.0 32 ............................. CCGGTTGTCCTTGTAATGGGGGGGGGCATTTG 137444 29 100.0 32 ............................. GGCGACGGGTTCGTCCGACCGCATCCGGGCCA 137505 29 100.0 32 ............................. CTTGGAACCATAAAAGATGGGCAAATAGTGCA 137566 29 100.0 32 ............................. ATTTTATTAGCGACTATCCAGGAATAAATTAC 137627 29 100.0 32 ............................. GGTGTTACTGATGGTGGGGCGCTGGATGAGGC 137688 29 100.0 32 ............................. AGCGCGTCAGGAACGTTTCTGGGGTGGCCTGA 137749 29 100.0 32 ............................. AGTGTCCACACTGCGGCGCTGAAAAATGCAAC 137810 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 137871 29 100.0 32 ............................. TTCGGAGTCCGGATCATCATTCAGGATAACGA 137932 29 100.0 32 ............................. AAATCGCGCGGCGATCGACTCAAGGCGGCGAC 137993 29 100.0 32 ............................. AAAATCGTGAGTGACTATCGTTCTGTTATTGC 138054 29 100.0 32 ............................. TCTCTGTGATTACCCCGGAGCATGGCGGTGCG 138115 29 100.0 32 ............................. TGGCCGGGGAAACAAGGAAAGTCCTGGTTTTT 138176 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 138237 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 138298 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 138360 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 138422 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 138483 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 138544 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 138605 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 138666 29 100.0 0 ............................. | A [138693] ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //