Array 1 61-328 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQE01000172.1 Vibrio cholerae strain A110829Z6 NODE_359_length_240_cov_8.054167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61 28 100.0 32 ............................ TCGGCAAGATCACCGCAAGCAAAAAACTTAAG 121 28 100.0 32 ............................ ATTCTGCCGCCATCAACTAGCCCCTTTCTATG 181 28 100.0 32 ............................ AGTAACAAAAAACTCGCCAAACGCATGGCGGA 241 28 100.0 32 ............................ TTTAGTCGGTTTGGGTGGCTATTTTTCAGAAA 301 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTGCTGCTAAAGTTTCATAG # Right flank : | # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2536-2086 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQE01000171.1 Vibrio cholerae strain A110829Z6 NODE_357_length_2507_cov_15.834463, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2535 28 100.0 33 ............................ CACTCGTCAGCTTGTTCTTTGGTTAGCCCAAGG 2474 28 100.0 32 ............................ AGTAACAAAAAACTCGCCAAACGCATGGCGGA 2414 28 100.0 32 ............................ TTTCTCTCGCCAGTCTTCTACTGAACCATTCG 2354 28 100.0 32 ............................ TCTATTTGAAGGCATGGACGCCACGCGAAATC 2294 28 100.0 33 ............................ GCCGGAGCGGTTCGCTTTAGTGCGCTTTGATAT 2233 28 100.0 32 ............................ TTTAGTCGGTTTGGGTGGCTATTTTTCAGAAA 2173 28 100.0 32 ............................ TTGCGGCATGGCTTTCGGCTTTGGTTGATCAC 2113 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTGCTGCTAAAGTTTCAT # Right flank : TATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATGCTTAATCTCATAAAATCAATCGGTTGTGGCCTTTTCTCTGTTCCTTCGGCTATTCGATTTTGTTTGTCGGCAATTGAATAATGCTGTCGCTGTTTGAAATGAATTGATGCTGTGAGTTTCGAGCTGTTGCCTCATTTTAGTTTTGAGCCGGTCCGTGTGGAGTGTTTTTTTCTCAAAGTCGCTTTGAGTGATTTGGCTCCTTGGCTTATCGGCCAAAAGCGTATCGGCAATTTACTATTGTTTTGCGCTGCCTAATGAAAAGGCAATTTCGCTGGCGCTGTTGGTTCAGTGTTGTTGCCTCATTCGAGTTTCACGCCAATTTGCTGTGAATTTGGTTGATGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9604-7293 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQE01000048.1 Vibrio cholerae strain A110829Z6 NODE_64_length_28965_cov_33.111202, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9603 28 100.0 32 ............................ TGCTAAGAAAAAATCATCAAACAAAGTCTCTA 9543 28 100.0 33 ............................ GTACATATACCGGGCGTACATTTACCGGTTTTT 9482 28 100.0 32 ............................ TATCAGCACACGATGCGTAACAACCTGCACCA 9422 28 100.0 33 ............................ TTTAGCCGGAGGGGCTCATGATTATTTTCATCA 9361 28 100.0 32 ............................ TTCGCCTAAATTCCCACATCGATTACAAATAC 9301 28 100.0 32 ............................ GCAAGCAAAAAACTTAAGGTTGTTGATTCAGC 9241 28 100.0 32 ............................ ATCTTGGATATCCGCAAGATCTTGAGAATCTT 9181 28 100.0 32 ............................ AGTCAATGGATTGTGGATCATCATCATGGCGT 9121 28 100.0 32 ............................ GTTCTGAGCGTTCCCCGTCGATGTGGACTTGT 9061 28 100.0 32 ............................ ATTCTTAGCGCAGCGCTGTAACCAGCAACCAA 9001 28 100.0 32 ............................ GTATTGATGCCGTTGGTAACATTACAGACCAA 8941 28 100.0 32 ............................ TTGCTCGGATGTCGCGGTTAAAGATGCCATGC 8881 28 100.0 32 ............................ AGATTAAGAGATTACAAGACAAACGGCGAGCG 8821 28 100.0 32 ............................ AGATAAAGGAGTGACCGGATATGACAACGAAG 8761 28 100.0 32 ............................ GAAACAAAGTGTCCAAGATGCTCTTTCATCGC 8701 28 100.0 32 ............................ TTGATGATCTCAACCGCAAGCGCGTTTGCTTC 8641 28 100.0 32 ............................ GCACCGCGACTTATCCGGGCTCAACCGATCCA 8581 28 100.0 33 ............................ TTTCGAGCCAGAGCCAGAAGAGCGCCCCATGTT 8520 28 100.0 32 ............................ TGCCATTGTCCATCACAAAAAACCGCAGCTTG 8460 28 100.0 32 ............................ CTCACTTGGGTCGTTGTACTCAACCACGGCTT 8400 28 100.0 32 ............................ TGATGCGTGAACAACATCCCAGTGTGCTCCGA 8340 28 100.0 32 ............................ GTTCATGTCAATTCAGCTTCTGGCGATCAGGC 8280 28 100.0 32 ............................ AACTCGCAGTGATGATCAGTCGACCATAATTT 8220 28 100.0 32 ............................ CGATTGGTTTTTACAGCCTATTTCATCAACAC 8160 28 100.0 32 ............................ ACATATAAGCCTTTCACCGGAAATTTGAATGA 8100 28 100.0 32 ............................ GCCACCGAAGAACTGCACGCGCTAGGAGTGAT 8040 28 100.0 32 ............................ AATAGCCACTCCGCCAAATTCATTAGGTTCAG 7980 28 100.0 32 ............................ TCTACATCTGAGAAGATAGCTCAAATCGGTAA 7920 28 100.0 32 ............................ AAAAGGCGTTGCTTCATTTGCGGCGCTCCTTT 7860 28 100.0 32 ............................ TGCAAAATCAAATCAGTGTCGGCAAAGCGCCA 7800 28 100.0 32 ............................ AGCCAGTAATGGAACCTTTCGGCTTATCGTGA 7740 28 100.0 32 ............................ ACCCTAAGCCGCTTTGCGGCTGCTCTTGTATT 7680 28 100.0 32 ............................ CAATAGAGCCAAGTGTCGAAATGATTGTGTAT 7620 28 100.0 32 ............................ ATAACGTTAGCTCCAACACACTCTGAACGTAT 7560 28 100.0 32 ............................ TTGGGATACCTGACCTTACATCAGCCCCCTTG 7500 28 96.4 32 ...........T................ AGTGTTTTTTTAACTCGGCGCGCAGGTTAATA 7440 28 96.4 32 ...........T................ TTGCAGTTTTGCAAGCCGTTGTTATCAGGAGA 7380 28 96.4 32 ...........T................ TTTGCGCAAACTTGGACTTTGTAGAAATAAAC 7320 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCACCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATATCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTAAATACAATAAGTTACAACTGGTGGTTTTTGACAAGGTAAAAAGATGATTTTTATCCTAACTGACTGTTGTAACTTATTTTTATTGATTTATTCTATT # Right flank : TCTGCTTTCCCCATTACATGGGTTGTCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTAAATTCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCCGTACCCAGAGCGTTTTTTGCTACAATAGAAATGCCTTCAAATCCTTATTTAATGCGCTCTAGCATCACGCCCGCTTCCATGTGGTGGGTGTAAGGGAATTGGTCGAAGAGAGCAAAACGCACCACTTGATGGGTTTTCCCCAAGACTTGTAAGTTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGATAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGCAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTACCTTCCATCGCCTGAGTAAACTCTTCAGCCGACATGCGAATGATCTGCACATTGTCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1321-1888 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQE01000084.1 Vibrio cholerae strain A110829Z6 NODE_140_length_5330_cov_16.380301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1321 28 100.0 32 ............................ ATCACCAATACGGTCTCGGGCTTCGGCTGGGT 1381 28 100.0 32 ............................ ATAAGCCGACATAATGCGAAGTAAGAAACAGC 1441 28 100.0 32 ............................ AAGGTTCCGCTGATAGGCACGATGGCAATACC 1501 28 100.0 32 ............................ GTAAGGGTTAGCGATTTCAATCACTGGCATTT 1561 28 100.0 32 ............................ GTCTTTTGATAGAACGAATCAAACATAACCGA 1621 28 100.0 32 ............................ CATCCGATTGCTGCATGACGCTTGAGCAGTTT 1681 28 100.0 32 ............................ TGAAAGGAGAGGCTTTTACAGACAAGCTAAAA 1741 28 100.0 32 ............................ ATTTGAACACAACAGCAACAGCAGCAAGACCA 1801 28 100.0 32 ............................ TCTCAGGGGGGATTGGGTTGTAGAGGGAGAGC 1861 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACGTTCAACTTGATCAGTTGGGTTTCATAAAAGGCTGAATCATCGTTGTGATCTGGCTTTCTTTGTCGCGGACTCTTAACTGTGCCCAAACTAACCTTGTTCGTTTTAAGTTTTGGTAGACAACTTCACAGCTTTTGGCGTTGGAAGTGTGTTTGCGTGATACTTTTGCGTAAAATGACTTTCAAGCAAATGAGTTTAAAAAGTCATTGTTAAACAATAGGCTACGAAACTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTATGGTTGTTTTGTTTGAGTTTAGTGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCATTGAATTTTAAGTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATAG # Right flank : ATAGTTATAACTTTGGCATTTGGGACCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTACGGCTGTTGTGTTTAGGTTTGGTTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTAGCCCTATCAGAGGAATATTATGAAATCTGCGGTTTTAGTGATCGATGTTCAGTCGATTTTATTTGATCCAGAACCACGCCCATTTGAGTCACAATTGGTGTTGGAAAAAATTAATGCCGTCACTGAATCAGCTCGAAGTTACTCAATCCCAGTTATTTTTATTCAACATGAACAGCCTAATACAGGCATTGAGTACGGCTCAGATGGTTGGAAGTTACAAGCAAGTTTAGTGATAGAGTCCAGTGACTTATTTGTACGCAAGACAACGCCAGATTCGTTTCTGCATACCAATCTCGAGAAAGTATTAAAAGAGCTTGAAGTTGAGCGCGTACTTTTATGTGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 404-195 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQE01000120.1 Vibrio cholerae strain A110829Z6 NODE_211_length_349_cov_18.051577, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 403 28 100.0 32 ............................ TGTTACGGAACTTGGAGCAATCCAAGAGAAAC 343 28 100.0 33 ............................ CTGTTGAGTTCGGTATTAATCAACTCAATTCTA 282 28 100.0 32 ............................ ACTGACGCTGTAACTAAGATATCGGGAAAAGT 222 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTATTAACAATAGGTTACTGCTAAAGTTTCAT # Right flank : ATATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGCGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTGCAGTTGTCGTGTTTGAGTTTAGTGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTATGCTTAATCCATAAAAATCAGTTGGTTGTGTTATCGATT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2443-1815 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQE01000133.1 Vibrio cholerae strain A110829Z6 NODE_240_length_2469_cov_19.457270, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2442 28 100.0 32 ............................ AAACATGGGCATCACCTGAGCCATCCGATTCA 2382 28 100.0 32 ............................ TCGGCGAGTAAGATCTGTTAGACTAACTAATT 2322 28 100.0 32 ............................ CGTTACTGAGGATGCCTTCGAGGCCGCGCTCA 2262 28 100.0 32 ............................ AATGCAGAGTCATTCAAAACCTTGGCGCTGCG 2202 28 100.0 32 ............................ GTGTTTAGCTCGTTAACAACACCTCTGTTAGA 2142 28 100.0 32 ............................ ATCATTTCATCCAAAGTGCCGGAGTAATCAAG 2082 28 100.0 32 ............................ GCTCTGTGTATGCTTTTTGAGGTTTTCAACCA 2022 28 100.0 32 ............................ TGCTTTAAAAACACCAGACAAAGAATTGCTAC 1962 28 100.0 32 ............................ GCTTATCAAGGCCAAACGCGAAAACAACGAGC 1902 28 100.0 32 ............................ AGCAAGACGCAATCTGTTAAAGATATAGTTCA 1842 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCAT # Right flank : TGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATACGTTGATTTTATTGGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTGCTCACCCCTTAACGCGGCGTTAGAATTATCAGAGGAAGTATGCATAACGATTTGAAAAATGTTTCAGACCACTTGTTAGTCCTGGGATTAGGTATATTAGCTCAAGCTCAAAAAAACGCCCTATATTCGAGCTATGATACATATTTGGACGAAGGAGTTTTTGGGGTACTTCAATCAGCTCAAGCTGCAGAATTGCTGATAAAGTCTTTTATAGCTCAAGAACATCCATTACTTATATTCTCAAATATCCCGAAATCAACTTCAGTTAATGGAGAGCTTTTATCTATTGAGCATATGTTTGAAAAGGGTGCTACCTTACAATATAGTGAGTTACCAGAAAAACTTTGGGCGGCAACGGGTTATAAGGTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //