Array 1 81346-80913 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYMB01000002.1 Enterococcus faecalis strain N015.C-18 NODE_2_length_259582_cov_47.4681, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 81345 37 100.0 29 ..................................... CTTCAGTAGTGACAACAACAGTTGTGGTT 81279 37 100.0 29 ..................................... GATATATATGGATTTGTACTTTGTTTAAT 81213 37 97.3 29 .....A............................... ACCTAGTTTATTCATATGTAGCTGAGACC 81147 37 100.0 29 ..................................... ATCTCTTAGTTCCGCTGGTGGAATTTTAA 81081 37 100.0 29 ..................................... TAAAATTCACCCCTTTCTAGCTCCAGTTT 81015 37 100.0 29 ..................................... CGATAAGTTGGCACCCGGTTGCTGTTTGG 80949 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 99.2 29 GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT # Left flank : ATTATCTTTTTAATCCACAATCAATAATGATTCCCAAGAAAATATACAAATAAAGAACATAGGAAATTAATCCGCTCTCTATGTTTCATGAATCTCATTAAGCATCTTTAACCACATTGAAAGGTTTATCTTTCAATGTGGTTAACTTGACTTTAATTGGGTCCTCAGTTTTACTTTTTTGTATCATCAAATAGTACAACAAAAGCATGAAATATTAATAAAACAGGGAGTGTCATTTTCAATAAATTGGGGATTAGTTCTTGATTTATAGATAATCGTATTCTCTATTCGTAAAGTAATAAATAACGTGACTCTAAAATTAAATAATTTCGTAATCGCATCACTTGCTCTAGCAAAGCTTCAATTTATTACTTATATTTTTTATATAACAATCACATTTATACATATCAACGATATTTTTACATCAATCATATCGTATCTGCGAAAACCAAACAACATGATTCTAAAACAAAAAAGCAAACCTACGAATAATACCGCAA # Right flank : TCGGAGAATTATTTTTTCTCCAAAGTTCCGTACTCGCATCACTTATCCATAGCTAGATTTCAGTTTAGAATGAACCACTAATCAATAACAATTTAAGCTTTTTCATAACTCAAATAAAAGTTTTCGTCCAAAATATATTGGAATCTGTTCTGGACCACCCTTTGTTCTAAAAACAGGACATCCACATTATTTAAAGAGATATATTCTACCACTTGTTGCACTTCATCCTCTGTTAAATACGTACACGCATTAATAAAAATCAATAATTTTTTCTTTGATAAATAACGATGTACTTGTGTAATTTCCATAACTTTTTCAAAAATCGTATCACTCGTTGTTTCGATTTTGATTCCAAGAGCTTTGAAAAGTTCCTGCACGGTGATGCCATCTTCTTCCAAATCCATTTCATGTTCCAACAATTCATAGCCAATTAATTGACTAATTGTTCCAGTTAACTTCTCAATCATTGATTTGACTTCTGGTTTATCATTTAATTGTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 103393-104419 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYMB01000008.1 Enterococcus faecalis strain N015.C-18 NODE_8_length_128713_cov_43.1619, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 103393 37 97.3 29 ....................................G TTTGCTGGATTAGCTAAATCTACATTGGT 103459 37 100.0 29 ..................................... TCCAATTTTGGTTTTGTGACGATAGCTTT 103525 37 97.3 29 ....................................A GCATTAACTAAAGAACGGCGCATACCGAT 103591 37 97.3 29 ....................................A ATATCAAAAAATAAAATATTTGGCCGCTT 103657 37 100.0 29 ..................................... AGTGTGTTAAATTTTATAAAATTAAGCCC 103723 37 97.3 29 ....................................G AAGAAATTTTAGCACGCAAAGCGAATGGA 103789 37 100.0 29 ..................................... ACTGAATCTAGTTCACCATCTGTATTATC 103855 37 97.3 29 ....................................C TTTGCTTTGTTTTGCATCGTCTTCGCTGA 103921 37 97.3 29 ....................................G CAATAGATAATGTTGCCCAAATTGGATAA 103987 37 100.0 29 ..................................... AAACACGATGATGGTTATTGGACCTATTA 104053 37 97.3 29 ....................................C CGAACTTGTGGCTTAAGTCATACATACAG 104119 37 97.3 29 ....................................A TTTCTCTTCATATATAAATTCATTCTTGG 104185 37 100.0 29 ..................................... TCAATTATTAAACAATTTTCCATTAGAAA 104251 37 100.0 29 ..................................... TCAATTATTAAACAATTTTCCATTAGAAA 104317 37 94.6 29 ....................G...............G ATGGCCGTCACACCAATGCTGCACGATTA 104383 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 16 37 98.1 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTTGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAAACCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATACTTCTCCGAG # Right flank : AAACTTTTTTGATTTGGCTTTTTCTCCCTTGTTTTATAGTCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTCAAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //