Array 1 274004-273425 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHDM010000014.1 Salmonella enterica subsp. enterica serovar Stanley strain UPM 517 isolate Salmonella enterica, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274003 29 100.0 32 ............................. GCGGGACCTCCAGCGCCACTGCTAATATTCGT 273942 29 96.6 32 ............................T GTCCCGTACGAGATACTCCAGCGCCTGCCCGC 273881 29 100.0 32 ............................. GAGTAATGGATGCCCTGCCCGGCGATTGGATT 273820 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 273759 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 273698 29 100.0 32 ............................. GTGATTCGCCAGTTCGCCCGAACGGTGATCGC 273637 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 273576 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 273515 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 273454 29 93.1 0 A...........T................ | A [273427] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 291689-290136 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHDM010000014.1 Salmonella enterica subsp. enterica serovar Stanley strain UPM 517 isolate Salmonella enterica, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 291688 29 100.0 32 ............................. TTGTCATGCGGCGCTGCGAGCGTGCGGCCTTT 291627 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCGCACGCCCTTA 291566 29 100.0 32 ............................. CCTGACTGCCGCCGGTGTAGGTGGCGAATGCA 291505 29 100.0 32 ............................. TGAAACGTGGCCCCGCGTGTGTTTTGGTTCGT 291444 29 100.0 32 ............................. CGCCACGGAATATCTCCATCGGTCGGGTGAGG 291383 29 100.0 32 ............................. GCTGCCAGCACTACTACCCGCCGTCGTTCCGC 291322 29 100.0 32 ............................. CAGATCGGCCTCTGATTTAGACAATTTCAGTT 291261 29 100.0 32 ............................. CGCCGCGAGGTGATCGAGATGCTTGAGGGTAT 291200 29 100.0 32 ............................. GTATCTCGAAGAGCGTCAAAAAAGCCGGAATG 291139 29 100.0 32 ............................. GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 291078 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 291017 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 290956 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 290895 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 290834 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 290773 29 96.6 32 .............T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 290712 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 290651 29 96.6 32 .............T............... GATTGTTCAGATTGGGAATTTGACCAACGCCC 290590 29 96.6 32 .............T............... GTTACTGTATTATCTCTCGCATAGACCCGGCA 290529 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 290468 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 290407 29 96.6 32 .............T............... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 290346 29 96.6 32 ............T................ CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 290285 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 290224 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 290163 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTAGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //