Array 1 3-764 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZDX01000157.1 Staphylococcus agnetis strain SNUC 3610 contig157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3 36 100.0 30 .................................... TGAGTTTGATAACAAAACGCAAGCTGCTAA 69 36 100.0 30 .................................... GTATTGCTAGTGGTGGTGGTATCTATGATT 135 36 100.0 30 .................................... AGATCAAGCACAGCACATTTGTTTATAACC 201 36 100.0 30 .................................... TGGAAGAAAACTAATAATCCAACTAAACAC 267 36 100.0 30 .................................... TGACGTTAGGTAATGAAGTTTTAGCTAACA 333 36 100.0 30 .................................... ATTTTCAATAACTTCTTTAGCTTTACTAAT 399 36 100.0 30 .................................... GCAACCGCTTTATTGTATCTGTCTTCCATA 465 36 100.0 30 .................................... CCTGCAAGATTTTTCTCTAACTCTGATTTG 531 36 100.0 29 .................................... TGAAGTATAGGGAGGGCACGCACATGCTT 596 36 100.0 31 .................................... CATCACGGCTGATACAATACTACGTGCTTGG 663 36 100.0 30 .................................... TGGTAACCTTGCAACACGTGGCACAGTACA 729 36 80.6 0 .........................G.TTT.AT..A | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 98.4 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : TTG # Right flank : ATGTGCTATTTATGAAATATCTATATAAGCGATCCATTTATTTTAGCGATAACCTCATAAAATTGTTTAACTCAATGAAATAAATGTTATTTAGGTGGAAGTTATAACACTCACTCCATAAAAAATATCAGAAAATTCTTGACTCAAATGGATCTTATGATAAAATAAATTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATATTTTTGTTCTTCTTTTATAATAGTATTTAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTACCTCAGTGGGATACGGTATTGTAGATAGTGATACGCGTGAAATTAAAGATGCTGGGGTACGATTGTTTCCAGAAGCGAATGTAGACAATAATGAAGGAAGACGTAGTAAAAGGGGAGCGCGACGTTTAAAAAGAAGACGAATTCATAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1289-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZDX01000074.1 Staphylococcus agnetis strain SNUC 3610 contig074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1288 36 100.0 31 .................................... TAAGAAGTACCGTATCAGTAACAACCCCTTT 1221 36 100.0 30 .................................... ATAATAATCCGAATAACGCGATAAACTTCG 1155 36 100.0 30 .................................... GTTATACGCCTTTATATCGTCGTTTTAACT 1089 36 100.0 30 .................................... AATTGTCATTACAACTACACCTAACACTTG 1023 36 100.0 30 .................................... GTATCCACAAAAAGATTCCTACCCTATCCA 957 36 100.0 30 .................................... TTAATTTTGTCATCAACTTCACTCGGCTTA 891 36 100.0 30 .................................... AGCAATTGCTTCTTCACGGCTAACAGACCT 825 36 100.0 30 .................................... GGAAGATGAGAAAACTATTTTGGATTTCCA 759 36 100.0 30 .................................... ATCAGAAATCGGCAAAGTTTCTTTAGGCAT 693 36 100.0 29 .................................... TTTACTAGGCAGAATATTAACATGCATGT 628 36 100.0 30 .................................... GCAAATGGTATAGATGAAAGCTTGATAAGA 562 36 100.0 30 .................................... TGCTAAAGCACTTGCCATATTTTATATCCA 496 36 100.0 30 .................................... ATTTCGATAACTATTTGACTTTGAGGGTCA 430 36 100.0 30 .................................... CGAGAATGGGAAGATGTCGCCAATGTAAGT 364 36 100.0 30 .................................... GCCATTGCTTTGGCACGTTGTAAATCACGT 298 36 100.0 30 .................................... CGAACACCAAAGAGGCGCAATGGGCGAATC 232 36 100.0 30 .................................... TGAGTTTGATAACAAAACGCAAGCTGCTAA 166 36 100.0 31 .................................... GCGCAAGAAAAGTTATATATGAACGAGCTTT 99 36 100.0 30 .................................... TGAGTTTGATAACAAAACGCAAGCTGCTAA 33 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.6 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GACGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTGGTCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTTACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATTGCATTAAACCTTGCCCAAAATCTTTAAAAAGATCACTCGGATTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTCATATTTTAGAATGTCGCAAATATCAAGAAACTGAAATGGTAAAGGTCACATCTAATCCTTTACAATCTTATTATATGACAAAGGTCAAAAATAGTCAAGGTCAAAGTATTGTGATTGGTGTAAATTAAAATTTATCCAAAATACGTAAAGATCAGTGATATCAATGGATTAGACAAACTTAAAAGTTATAGTATACTGTAGCTAGAG # Right flank : A # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //