Array 1 3709-4723 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LOKN01000051.1 Xanthomonas axonopodis pv. khayae strain LMG753 contig_144, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	===============================	======================================	==================
      3709	    31	 100.0	    38	...............................	AGCAGCGGCAGCAGGTCGCCCGACGTGTTTGGCGCAGG	
      3778	    31	 100.0	    34	...............................	GGTCTTTGCGGCCACCAAGTCCAAGGACGTCATC    	
      3843	    31	 100.0	    33	...............................	ATCGCGTCCAGGCGTACGCCGTAGATCGACACC     	
      3907	    31	 100.0	    36	...............................	GCGTCAAGTGGATTGTTTGCCGCGTCCTGCGCCGAG  	
      3974	    31	 100.0	    33	...............................	GATCGATGTCGGGCTAAACGACGACCTGACCAA     	
      4038	    31	 100.0	    36	...............................	TGCAGCTGGGCCGTCATGTTCTCGGCCAGCGTGAAG  	
      4105	    31	 100.0	    33	...............................	GTTTTGTGCGGAGAGCAGGACGAATACACAAAA     	
      4169	    31	 100.0	    33	...............................	AGCTTCAAAGTGTGGATCGGGCCAGACGTCCCT     	
      4233	    31	 100.0	    35	...............................	CCGTACTGGCGTATGTGATGGGCGCGGCCATGGGC   	
      4299	    31	 100.0	    35	...............................	CGCGACCTGGTGGACGAGCTTGGCCGGCTCGGCGT   	
      4365	    31	 100.0	    34	...............................	CTGACTATCCCTGCATAGGCCACGACCTGCGAGG    	
      4430	    31	 100.0	    33	...............................	TGCACCAACCCAAGTACCATCGCGTCGTTCCAG     	
      4494	    31	 100.0	    36	...............................	AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG  	
      4561	    31	 100.0	    34	...............................	CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT    	
      4626	    31	  93.5	    36	T...........T..................	CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA  	
      4693	    31	  96.8	     0	.G.............................	|                                     	
==========	======	======	======	===============================	======================================	==================
        16	    31	  99.4	    35	GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	                                      	       

# Left flank :   AATGACGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTACGACGTCAGCACCAGCTCTCCCGGGGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGGGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTACGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAAAAAAAAAATAAATACATAGCGGATTCACGGGGTCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG
# Right flank :  CAATTTAAACTCGCCCCGCCAGCCGGACGCTGACGAGGTGCAGGTTGGACATGCTTGAGGCCTGCGTATGGCAAAGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGAACCATTATTTGACGATGATGGTCTGAGGCGTGCCTGCAGGCTTGCCGTCCACCATGACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCAGCCACCTGGCCATCCTGGTAGGTCAGCTTTGCCGACACGGCCACGTTGCTCGCGCTGCCGTCCGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTCGCCGGGGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGACACCGTCACTGCGCTACCCGTCGCAGCACCGCCATCGGTGCTGGCCGCACCGGT

# Questionable array : NO	 Score: 9.23
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCGCCCTCACGGGCGCGTGGATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.20,-7.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.41,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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