Array 1 268-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTO01000103.1 Salmonella enterica subsp. enterica serovar Muenster strain CVM N29310 N29310_contig_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 267 27 93.1 32 --........................... CCGCTGGCGGTGAATACCATGCGGCGTATCGC 208 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 147 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 86 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 25 25 86.2 0 .........................---- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : A # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 670-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTO01000096.1 Salmonella enterica subsp. enterica serovar Muenster strain CVM N29310 N29310_contig_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 669 27 93.1 32 --........................... GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 610 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 549 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 488 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 427 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 366 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 305 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 244 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 183 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 122 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 61 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TGACTCATACTCGTCTGCGCCCTGCGCGCAAAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 457-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTO01000059.1 Salmonella enterica subsp. enterica serovar Muenster strain CVM N29310 N29310_contig_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 456 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 395 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 334 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 273 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 212 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 151 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAGT 90 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 626-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTO01000071.1 Salmonella enterica subsp. enterica serovar Muenster strain CVM N29310 N29310_contig_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 625 27 93.1 32 --........................... CGCCCACCCTGAGTATTATCACTACTCCGGAC 566 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 504 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 443 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 382 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 320 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 259 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 198 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 137 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 76 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GATCGCTTCCAGCCGTTCTTTCTCCTGCATCAGGTGTTCCCCGCGCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTO01000073.1 Salmonella enterica subsp. enterica serovar Muenster strain CVM N29310 N29310_contig_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... ATTTAATTGCGTCATAATATTAATTCCTGTAT 60 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 121 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 182 25 86.2 0 .........................---- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-882 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTO01000072.1 Salmonella enterica subsp. enterica serovar Muenster strain CVM N29310 N29310_contig_72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 27 93.1 32 --........................... CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 60 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 121 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 182 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 243 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 305 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 366 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 427 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 488 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 549 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 610 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 671 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 732 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 793 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 854 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GCGATCTTAAATTTGCCGCCGCGTAATTTTTGGTGTTCCCCGCGCCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //