Array 1 2100-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPF01000035.1 Virgisporangium aliadipatigenens strain NBRC 105644 sequence035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2099 29 96.6 32 ............................C TGCGCGGTGGGTACCCGGATCGAGCGCCCCAC 2038 29 96.6 32 ............................C GAGACCCTCGCCCGCGCGTCCTGGCTCAGCGG 1977 29 96.6 32 ............................T CCGCTCGACCTCGGGCAGGCAACGCTGCCCCT 1916 29 96.6 32 ............................C CTGCCGTCCGGGCACCCGGCGCTGACCCTGTC 1855 29 100.0 32 ............................. GCCCGGTGAGCCTCCAGGGCCTCGGTGTGGGC 1794 29 100.0 32 ............................. GACAGTCCACTATGGACAAGGCCCGTCGCATC 1733 29 96.6 32 ............................A GGGCGGGGCCGCAAGTACCGCCTGGCGCGGCC 1672 29 96.6 32 ............................C TGTGATCCCCGCATGATGGGCAAGCACCCCGT 1611 29 96.6 32 ........................A.... GGATCCACCATGGCCATCACCGGCGAGGCAAT 1550 29 100.0 32 ............................. GCGCTCGCGGCTCTCGGCCAGGCGGCGACCCT 1489 29 96.6 32 ............................C ACCTGCGCCTGCGCCTTGGCCTGCATCTTGTG 1428 29 100.0 32 ............................. CCGCCGACGACGACGGCTCCGTTCGGGATCGT 1367 29 96.6 32 .......G..................... TGGACCAATGAGGCGGAGCAGCGCCTGACCGA 1306 29 100.0 32 ............................. ATCGCGCCCTCGGCGGCCGCCCACTGCCCCAG 1245 29 96.6 32 ............................T CCACTACGCCCAACCCAGCCAGGCCGCACACG 1184 29 96.6 32 ............................C TCGACACCGAGGCTCGGATCCTCGTCCGGCCC 1123 29 100.0 32 ............................. TAGTTGTAACAAATGCCCTGATCAGCGACCGG 1062 29 96.6 33 ............................C GCTGGCGGTGGCGAGCAGGCGACCGACGGGGGA 1000 29 96.6 32 ............................C ACCGACCACGGGCCGTCCGCCTGAAACGCCGT 939 29 100.0 31 ............................. CGGGGGCCGGGGTCCAGTAGCGCCACCAAAG 879 29 100.0 32 ............................. TCGCCGAAGCCGTCGACGCAGTGACGGAGCAG 818 29 93.1 30 ........G...................C CAGGCCGTCAGTGACAGCACCCCCCCCCAC 759 29 93.1 32 .T..........................C GTGGCGCTGTTGTCCAGGAGCGTCATGCGGAT 698 29 96.6 32 .T........................... GCGACCGCGACGCCGTCGAGGGTGCCGGGCAC 637 29 89.7 32 .T......................C...C CGCCTTGCGTAGTCCGGCGGCCAGTTCGCGTT 576 29 93.1 32 .T..........................C CCAGTCGGCACAGCGGTCCGATAGTCGTCAGC 515 29 93.1 32 .T..........................T CATCAATTCGTTGTTCGGTGTTGCCGGTGGAT 454 29 96.6 32 .T........................... CACGACGCCCGCTCGTCGCTGTGGACGTACGC 393 29 96.6 32 .T........................... AACGAGACGGCGCTGGGCGCGCTCGCGAACGG 332 29 93.1 32 .T..........................C TCACGATCCGGGTCATCTAGGAGGACGCCGTG 271 29 100.0 32 ............................. TCGTCGGCAGCGAGGCGTGGCCGGTGCTGGCG 210 29 96.6 32 ............................C AAGTCCTCCAGCACCCCGTTCAAGGTGAAGAC 149 29 100.0 32 ............................. AAGTCGGCGGCCTACGAGATCGTCGCCACCGG 88 29 96.6 32 .....................A....... CGTTCCAGGAAGCGCTCGTCCGGCGCGAGGCC 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 35 29 96.8 32 GCGCTCCCCGCGCATGCGGGGGTGGTCCG # Left flank : CGTCGGCGGCATCCGCGCCGGACGGCTCCCAGCGCACCGTGAGCGCCAACTCGTCGACGCGAGCGGCGTGCTCGACCTCGACAAACTGCGCAGACCCGAAAAGAGGGCCTCCACAGGCTTGTGACCTGCGAAAACCCTCCGCTTGTCGGGACGGCCGGATTTGAACCGACGACCCCTTGTTACCAAAAGTGGCCGTTTCGACCTCGCCAACGGTCGTCACAAGTTAGCAGTGAGCTGCACGAACGCGGTCCGTCGATAGCCATCGATTGTCACTGATTGTTAGCTATCGCCAGGGGTTTTCGGGGGGTAAACGGGGGCCCAACACTCGCTTGTGCCCAACCAAGTCGGGCCCTCACCCTGGAGGCGTCGGGCATCGAATGCAGCATTAGCGCGGAAATGCTGGGGCCGCGAGGCGACCGTCGACGGGTAAGCTCCGGGACCGAAGACAGCATCCGATCAGAAATGCGGATGTTGATCTACGACACTGCAGGTCAAGAAGT # Right flank : C # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCGCGCATGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9995-6676 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPF01000068.1 Virgisporangium aliadipatigenens strain NBRC 105644 sequence068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9994 28 93.1 32 .....................-......G CCTATTACGAACTGCTGCGCAAGCAGGAAGAA 9934 29 100.0 32 ............................. GGGGTGCTGCTGCTCTTGTTGGGCAGCGAACC 9873 29 100.0 32 ............................. GACTGGGCGGTGATGTCGCCGTTGCGGATTGC 9812 29 96.6 32 ............................T CCCATCTCCTCCTGAAGTTCGCGGGCGGCCGC 9751 29 96.6 32 ............................G GCCGGCATCCGCAAGCTGACCGCCGAGCACTT 9690 29 96.6 32 ............................T CGCGCGGACCTCGTTGATGGACATCCATCCGT 9629 29 96.6 32 ............................G GGGAGCGTGCCGTGCCATCCGGCCTCGTAGTA 9568 29 96.6 32 ............................G TCGAAGGACCGCAGTAGAACGTTCACCGGTAT 9507 29 100.0 32 ............................. CGCCCGGCGCCCGGCGTCACCGAGGCCCGGTA 9446 29 100.0 32 ............................. GACAGCGGCCCAACCCGTGGTGGTCAGGGGGC 9385 29 96.6 32 ............................G CATCACGGCGTCGAAGAACCCGGACGCGGCGC 9324 29 100.0 32 ............................. GCCACCGTGACGAAGGTCGGGCGTGTCTGGAT 9263 29 100.0 32 ............................. ATCCGGAACGCACTGAAGGAGAAGCTGAAGCG 9202 29 100.0 32 ............................. AGTTCGAAATCGTCAGTGCAAAGTTCATCGAA 9141 29 93.1 32 ......................C.....G TGCACACCCGTGGACTCGAACCACGATCCTCC 9080 29 96.6 32 ............................G GCCACGGGCCGCCGCTTCTACGCGGACAGCGC 9019 29 93.1 32 ................T...........G TCCACCGACGAACTCCGGGGGCTGCTCAATAC 8958 29 96.6 32 ............................G AACGCGGTCGTCGCGCCGTTGTGCCGGTTGTG 8897 29 100.0 32 ............................. GACCGCTGGTCGACGTCGTCGGTGCCGTACGA 8836 29 96.6 32 ............................G TGTCTGAGACGAGCCGCAAGCGCAAAACGGAC 8775 29 96.6 31 ............................G TGTCGTACCCGTAGTACACCGTCCCTGGAGT 8715 29 96.6 32 ............................G CTGACCCCCGCCGGGGTGTCAGTCAGCGTGAT 8654 29 100.0 32 ............................. GCTCCGACACGCTGTACAACCTCCTGTCGGAG 8593 29 100.0 32 ............................. GAGCCGGAAGGGCGGCAGCGTGATCGTCACCA 8532 29 96.6 32 ............................G AACCGAGCCCGTCTTGGGCCTGAGGTTCGAAG 8471 29 96.6 32 ............................G ACGGCCACCATGATCGCGAGAGCCACGCCGGC 8410 29 96.6 32 ............................G TCGCGCGTGACGACGGAGGCGATCATCGGCGG 8349 29 96.6 32 ............................T CGGTCGGCGCTGGTGTAGCGGTCGGCGTCGGT 8288 29 100.0 32 ............................. TCCGGCCGGCGCTCGTCGTAGCCCTCCAGGGC 8227 29 100.0 32 ............................. GCTAGCAACCCGCGTAAGGCTGCCCCTGCTAA 8166 29 100.0 32 ............................. AAATTTAATTGGACCGTTAACAGCCTTGAGGA 8105 29 96.6 32 ............................G ACGCATTCGGTACGCCGTTGCTGACGGGTCCC 8044 29 100.0 32 ............................. GAGCACAGGATGCTCGCCCAGCTCGCCCGCTT 7983 29 93.1 32 .....................A......G TCCGGGGTCCCGTCGTGCCCCGGGTCGACGGC 7922 29 96.6 33 ............................G ACGCCCCGCAAGCTCCGGGCCGACATCATCGCC 7860 29 100.0 32 ............................. ACGGGCGGCACCGGTAACCCCGACCCGGACCC 7799 29 100.0 32 ............................. CGTACGACCTGCCGCGCGGCTACCAGGGCGAC 7738 29 96.6 32 ............................G TCGAGGGCGTTGCGGAAGCGGGCGTGCCGGGC 7677 29 100.0 32 ............................. GTTCTGCGAACCACTCGCATTGGTGACGGTGA 7616 29 96.6 32 ............................T GAGGCTCAAGGTCCGGTGAACCTGTTGAAGGT 7555 29 100.0 32 ............................. GCAAATCCGATATGGATAGCGGCAGGAAATAG 7494 29 100.0 30 ............................. GCTCGCCGCCGCGCTCGTGGGGCTTCTGCC 7435 29 96.6 32 ............................G TCGGCGACGGTGGTGCCCATCGCGATGAAGAA 7374 29 96.6 32 ............................G TCCAGCTGGCGCAGGTCGGCACCGGCGACGGT 7313 29 100.0 32 ............................. TCGTCTACCTGTGTGCGGGTGTCGAAGCGCAC 7252 29 100.0 32 ............................. CATCGTCCGACTGAACGGGTCAGCCGGTCCCC 7191 29 96.6 32 ............................G ATGGCGGTTCCGTTGCTGTCCAAGGCCCGGAA 7130 29 100.0 32 ............................. GCGCTCGCGGCGGCGATCGTGGCGCACATCCC 7069 29 96.6 32 ............................G GCGACCAGGAGCGCCAGGACGATCTGCGCTGC 7008 29 96.6 32 ............................G CAGCGCGCCGCGCTGTCCTACTTCCACAAGAC 6947 29 100.0 32 ............................. GGTCCGACGACCGTCGCTGAGCAACAGTTCCC 6886 29 100.0 32 ............................. AGCAACACCGTTGTGTCGACGCCATCGGGGTT 6825 29 100.0 32 ............................. AGGTCGGCGCCGAACGTGCCCAGCGGCTCCTC 6764 29 96.6 32 ............................G GCGATGTTGACGGATCGCTCGCCCGAGTTGCT 6703 28 75.9 0 ........-..A.......A..C...GAT | ========== ====== ====== ====== ============================= ================================= ================== 55 29 97.5 32 GTGCTCCCCGCGTATGCGGGGGTGGTCCC # Left flank : ACGTCGCGCACCCAGAAGAGGTCGGAACCGAACTCGACGCCGGCGTACAACTACTGCGAGTCAACCGATCACAGTTCGATCCCTGGTTCGTCGCCGGAACACTATCGCTCGCCCACAACCGATCCCAGCGCGCCACCTCCAGCAGCGGGGTACTCAGGATCGACCTCAAGCACCTCACCATTCCGGTCCTACCGGTCGCCGACCAACAAAGGTACGGACAGGCATTCCGTCAACTAGCCGAGTACCGCACCACGCTCCAACAGCTCACCAACACTGGGACCGTGCTGATACATGACATCACACATGGGCTCAACGCCGGGGTGCTCGATGTGCGGCCACTCACCGACGCACGGCGGAGCCGCAGCGCGAACGGCTTGATGTCTAACCATCTCGCTTCGCCTGGCGCCCGCGACAGACGACCGTGAACCGGTACTCTCAAAGCCAGGACACATCTGATCAGAAAATAGGATGTTGATCTCCAGCGCCGCAGTTCAAGAAGT # Right flank : GGCTTCGCAGTGCCAGTCGCTTGCGAAGAACTCTCCTACGCAAGGCGTTGCAGCGTGGCATCGCCAACCAGCCGAGAAGGCGGCCAACTCTTCTCAGGCATCCCCGATCGCAATCCTGACCGCGGGTTCAGCCTCCACCACACCTTGCCCGCTGTTTCGCCCGCCTGCGCCACCGGACTGTCTCGGCTGGGATGGCTGCGCGGTTGCTGACCGCGTCCAGGCAGTCCAACAGTTAGCGTTTCGCAGCTGTAGAGGATTCGGTCGCTTGGTTGTGCGGCGGGTGCTCAGGTGTCGTACGTCAGGAACAAGCGGGTCTCCGGCTTCTCGATGGCGTTGCCGGTCAGGTCTGCCAGGGGTGCCCGGCCGGTCGCGTAGGCAGCCAGGGCTGGAACCGCCGTGCGGTCGCGGTCCCAGGCGGTCACCTGTTCGACGATGCGTGCGGCCAGCTGCGCGCCGTGTGGTCCGTGGCCGGTTGCGCCGATCTGCCAGCGTCCCGGTTC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26246-25813 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPF01000068.1 Virgisporangium aliadipatigenens strain NBRC 105644 sequence068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26245 29 96.6 32 ............................G TCATCGGCCGACCGCTCTCCGACGGCGGAATC 26184 29 100.0 32 ............................. GCGGCGATCCCCGCGACGACGGCGGTGAGCAC 26123 29 100.0 32 ............................. GGGGTCGCGGCCGGCCTGATCGGCGTAGCGAT 26062 29 93.1 32 .T..........................G GTGTGAAAACACCCAGGTACGCGGGCTTTTGC 26001 29 89.7 32 .T....T.....................G TGCGGCCAGCCGGGCTCCTGCTCGCGCAACTT 25940 29 96.6 20 .T........................... GCTAGGACGCAGTCGACGGG Deletion [25892] 25891 28 75.9 22 ...GAG..G...G-..............G AGCCCGCAGCGGCGGGTCGCCA Deletion [25842] 25841 29 86.2 0 .T...........G............T.G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 92.3 29 GCGCTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : CGGGCGAATCAGCCGGGCCGACAAATACC # Right flank : GGCATGCGAAAGCGACGCGCCACAGGATCTCCGTGCTTCCCGCGCGGCGGGCGCATGCATGAGGTGGTCCCACGACGACCCCCCACCTATCAGCACCGCCACACGTTCCCTATTGGCGACCTGGTCAGGTTCGTCGTCCGAATCGGCGGCGTTTCGCCGCCCTGCTCCACCCAGCTGGCAGCGCTGCATTGAATATAGCCTCCGCGGGGCGGCGGACCAGGGTGATGCCGTCCAGGTCCACAGGCGTCCACTGGTGGTCGTGGACCAGGAACGACAGCCGTTGTTCGCCGGTGGTCTGATAGACCATCAATGCGCGTCCTGGTCCTGCCATGTCTATCACCCGTGCCCAGAGTCTGCGACGGACGCGGGTACTGACGTGTCCGATGTAGACGCCAGCGGCGATCTCGAGCAGCCATTGCGTGAGGTGTCCACGTAACCCTTCGGGGCATGCGGTGAGAATGACGACTGTCATCAGAAGCCGATGTCCTGTCCGTCGTCGT # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 903-1480 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPF01000071.1 Virgisporangium aliadipatigenens strain NBRC 105644 sequence071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 903 29 96.6 32 ...................A......... AAACACGCACCAGGCGTACAGCTGCACGCGCC 964 29 96.6 32 ............................C GAACTCCCGGTAAGCGTCCGGACCAAGCCCCT 1025 28 93.1 32 .....................-......T CCCGCGCTGGCCGCGGACGTGAACGCGCGCGG 1085 29 100.0 32 ............................. ATGAGACACTTGCGGATACAGGATTTCTTAGA 1146 29 100.0 32 ............................. TACTCGCAGGTCACGCGGATCGAGCTGCGGCA 1207 29 96.6 32 ............................C CCGCCCGCGTAGATCGTGGCCGCGGTCGGCTT 1268 28 93.1 32 .....................-......C ACCACGGCGCCACGGCGCAGGAACGTCGCGTC 1328 29 100.0 32 ............................. CGAGGCACGCGCATGCACGGTTTCGAGGTTGG GG [1350] 1391 29 96.6 32 ...................A......... TCGAGGAACAGGGTGCCCTGGCCGTTGCGGCC 1452 29 93.1 0 .........A.............A..... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.6 32 GTGCTCCCCGCGCATGCGGGGGTGGTCCG # Left flank : TACCGGCGCTCGCGGAACACTGGTCCACGTCGCCGACAAGGTGCACCAGTGCCGCGCATAAGCCGGCCCACCTAGGTATGCCATCGAGAAGCCGCCGTGCTGTACGCGGAGGCCGAGCAGGCTACTGGCTGTAACGGTTTCGATTTCCGCTCCAACTGGTCCTGACAGGCCGTCCACTTGTTACCGAAAGTGTCCGTTTCGACATAGTCAACGGTCGCCATAAGTTGGCATTGAGCTGCACAAACGCGGTCCGTCGATAGCCATCGCTTGTCACTGATTGTCAGCTATCGCCAGGGGTTTTCGGGGGAAACGGGGGGCCGAACACTCGCTTGCGCCCAACCAAGTCGGGCCCTCACCCTGGAGGCGTCGGGCATCGAATGCAGCATTAGCGCGCCAATGCTTGGGCCGCGAGGCGACCGCCGACGGGTAAGCTCCGGGACCGAAGGCAGCATCCAATCAGAAATTTGGATGTTGATCTACGGCACTGCAGGTCAAAAGGT # Right flank : GATGCCGTGGATGCGGCCGGCCGAAAGCCGCGGGGTCAAGGTCCGCATCGCCCGCAAAGGCATCGAGTCCACCCAACGCCTCGGCCGACACCGCTGGATCGTCGAGCCCTGCCTGTCATGGCTGCTCAACAACCGCCGACTCGTCCGCCGCTACGACCGCAAAGCCGAGCATTTCCAAGCTTTCGCCGACCTCGTCTGCCTCCTCCTCCTCTGCTACCGCCGATGGACCAAGGCCACTACCTGAGACGGTCCCTTAGTGTTCGATCAGCCTCCCGCGCTCATCGTCGCCACCTACGGCGGCAGCACGGGCCTGCCGACCCAGCGCGAGGCGCTGGAACTGCTCGGCTGCTACGGCGCCGGAAGGTGCGCAAGTTCGCCGAGATCTGCGCCGCGGTGGTGCTCGCCGGCGAGGTGTCGCTCGCCTCGGCGGTGCTGCACGGCGACTGGCTGGCAGGCACGACAGGCTCGGGCGCAACGGGAGCGATTCCGGGCATGGTAAG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGGTGGTCCG # Alternate repeat : GTGCTCCCCGCGCATGCGGAGGTG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //