Array 1 37712-36644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGF010000038.1 Pectobacterium brasiliense strain A079-S20-O15 A79_(paired)_trimmed_(paired)_contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37711 29 100.0 32 ............................. GAAAATTTACCCCAAAATAAATTAACCCGTAA 37650 29 100.0 32 ............................. TTGCCGATCCCTTTGCTGTTAGCCAGCTGTTG 37589 29 100.0 32 ............................. ATCTATACGATAACGCCGAGAATCTGGATGTT 37528 29 100.0 33 ............................. GATTCCTTCGGTGGGTTACGGGGGACGTTCTAC 37466 29 100.0 32 ............................. AATTAATCGCTGCAATGAGTGGGCGTGGGCTA 37405 29 100.0 32 ............................. TTGGGATGGATATTAGCGGTTTAAAATCTGGT 37344 29 100.0 32 ............................. CACAGCCGGCAGATTGTCGTACGCAAACTTCA 37283 29 100.0 33 ............................. TTTATTTAGGGCATCGAGCGTTTTAACGTTTGC 37221 29 100.0 32 ............................. TAATATTTCTGAGGTTGGTGCTCTTGTCTTCA 37160 29 100.0 32 ............................. AGTGGATCCATTGGATTATGGAGCGTAGGCAT 37099 29 96.6 32 ..............G.............. GTTGAGGATTTCAATGACTACACCGTTTTTAC 37038 29 93.1 32 .............T.A............. TTTTTGACGCCGTACAGGGTATCGCCTTCTAT 36977 29 93.1 32 .A..........T................ CGGTCTGAATCAGACATCATCCAGCACCTACA 36916 29 93.1 32 ........T.T.................. TATTCATCCAGATACAGGTTTCCAGTGTAGCT 36855 29 96.6 32 ..............G.............. TAAACACGAAAGTCATCGGGTAATTGCGTCGA 36794 29 93.1 32 ............TT............... AAAAACAACTTTGGCGTCGTGCTGCCCGCCAA 36733 29 96.6 32 .............T............... ACGCCTTGAAGATTGAGAGCGCATTACTGAAC 36672 29 93.1 0 A..........................T. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGTATCACGTATTTTTGAAGAGCCGGAAGACCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTCATACGTAACGCTGTTGCAGTTACACGTGTGTTCCCCGCGCCAGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGGTGGCCCCTGCTGGACTTGAA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGGAACCAAATCCCGCCTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCCTTCACCGTCATGGTGATGTGCGATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGTGGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCAGAGCTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAGGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAATGTATTCCAGCCGATTA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 164693-164904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGF010000012.1 Pectobacterium brasiliense strain A079-S20-O15 A79_(paired)_trimmed_(paired)_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164693 29 100.0 32 ............................. GTAGCCAATGCCCTTACGGTATTTGCTCACAT 164754 29 100.0 32 ............................. CGCCCGCGCCTGGGTATTTACAGGAAAAGGAC 164815 29 100.0 32 ............................. GATTTCTCCCTGACGCATAGCAGTTTCAATAG 164876 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAGCCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTAGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTAGTTTTAGA # Right flank : CGGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 222188-223839 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGF010000016.1 Pectobacterium brasiliense strain A079-S20-O15 A79_(paired)_trimmed_(paired)_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 222188 28 100.0 32 ............................ TCACAGCGGGGCGCTGCGGCGCGGGATGAATC 222248 28 100.0 32 ............................ GGGAAGAAGCCGCGCACAAGCTGGTAAACACC 222308 28 100.0 32 ............................ GTGAAAAATCGCCACGCCAGACCCGGAACGCG 222368 28 100.0 32 ............................ TCGCTGCGGCTGGCTTCATAGGTTGTGCGGTT 222428 28 100.0 32 ............................ GTCACCACATAGCACGCCGCCGGACAAATTCG 222488 28 100.0 32 ............................ GCATATGCCAGGCAAATCACCGTTCACCATCA 222548 28 100.0 32 ............................ ATCGACGTCCATTGAGCGTTCCCAGTGCTGGC 222608 28 100.0 33 ............................ GTTCTGGATCGCCGCGACATTCTGGATTATGTC 222669 28 100.0 32 ............................ GCTGGAAATTGTGGTTTAGCGATGGATTTCGT 222729 28 100.0 32 ............................ ATGAACGCAATTTTATCGGCCTCTGTCCCGAC 222789 28 100.0 33 ............................ AATCATCAATTTGCTCAAGCGTTAGGGGTTCAT 222850 28 100.0 32 ............................ CGCCAGGCGGGGGAGCTGCACCGGACAAGGGG 222910 28 100.0 32 ............................ GCTGTTCAGGGGCAATTCGTTTATGTCGAGTC 222970 28 100.0 32 ............................ GTAGCGTCATATACTGCTCAAGCTGATTGCCC 223030 28 100.0 32 ............................ ATGACGCTTATCACAGGCTACAGCATTCCATT 223090 28 100.0 32 ............................ CGTTATGGCCATGCGCCCAGTCGTGATCAGGT 223150 28 100.0 32 ............................ GAAAAATCAATCTGCCACGTCTCAGCCGATAC 223210 28 100.0 32 ............................ TTTGCTCTGGTCACGACGTAGCTCTCACTACC 223270 28 100.0 32 ............................ GCTATCCGACTGACTGCATGCGTGTGATTGAG 223330 28 100.0 32 ............................ GGATACGATATATTGCCGGTCACGCAGAACAG 223390 28 92.9 32 ...........T.....T.......... AGATCGGTGCAACTGACATACAACTGCGTTGA 223450 28 96.4 32 ...........C................ CACGAGGCAGTTATCTTTCGACACTGCCGCGA 223510 28 96.4 33 ...........T................ CTTCTGCCAAATGACAGAACGGTATTTATCAAT 223571 28 96.4 33 ...........T................ GTGGAAAAAGTTGTCGGTCATGTATTGCCGCTT 223632 28 100.0 32 ............................ CGCGTTAAACGGATTCTAAACGCCAGCCTAAT 223692 28 96.4 32 ...........T................ GGACGAAATCGCAGGACTATAAATCAGGCCGT 223752 28 92.9 32 ...........C.C.............. AAGAGATACAAGGATGTTGCGGCGGTATTACC 223812 28 75.0 0 ...........C.C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.1 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATATATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CCGGTTTTAAGTGCCATTATCTGGCTATTATCGAGGTAGCACTATCGGCAGGTTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGAGTTTCTTTTTGGGGAATGGAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAGTGAAGCGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCCAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 230838-229908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGF010000016.1 Pectobacterium brasiliense strain A079-S20-O15 A79_(paired)_trimmed_(paired)_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 230837 28 100.0 32 ............................ TGTCCGGCGCGGTTCGTTGACAGATTGACGCC 230777 28 100.0 32 ............................ AGGTTCCGGTAGTTGAGCGTCATATCGGACAG 230717 28 100.0 32 ............................ AGTACCAGTCAGTACCTGCGTGTCTACGAACG 230657 28 100.0 32 ............................ TGGTCACGCTAGGAAGTACCGTATCCGCAGCA 230597 28 100.0 32 ............................ GATCGCAGGGCTGGATCGTGAGCGTCAATACA 230537 28 100.0 32 ............................ ATCGGTAAACGATAGTGACGCAGAGGAAGCAA 230477 28 100.0 32 ............................ TGGCTACCCGTCAGATTCAGGAAAACACCCCT 230417 28 100.0 33 ............................ CTGTTCGACCTTGACCAGCTCACGCTGGAATAC 230356 28 100.0 32 ............................ ATGCGTGGCCAGCCTTCAATTGTTTCAAACTC 230296 28 96.4 32 ...........T................ AATTAGCGAGATCGTCGGGATGCCGCAGCCGT 230236 28 96.4 32 ...........T................ TCGACCTGAGAGGTACCGGCATCACCAGTCTG 230176 28 96.4 32 ...........T................ AGGCGCGAGCGACGGCGACGGATGATATCGAG 230116 28 96.4 32 ...........T................ ACGCCGGATACTCGCCACGACTTCCCGCAAAC 230056 28 96.4 32 ...........T................ CAATTCGCGAAACGGGTCGATGCGTTGTTATT 229996 27 89.3 33 ..........T-..G............. ACACGGTCACGAATAGTGATCCGCATGATTGGT C [229982] 229935 28 82.1 0 ...........A.C....C.T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 97.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATTCATAGCATATGCAGATACCTGACATAGGCCTATCATCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGGTCTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAACGCTCCCAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTGGCTGTGGCAGATCTGCCTGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAAAGCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //