Array 1 243-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWP01000768.1 Salmonella enterica strain BCW_6258 NODE_768_length_251_cov_1.11702, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242 29 100.0 32 ............................. TTCAGCGAGCCATAAAACCGCAGTTTGTTTGC 181 29 100.0 32 ............................. TCACTTCAATAAGTCCTGGCGGTAGCTCGGGG 120 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 59 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGATGAA # Right flank : GCCCAGTCAGGGGCGCGATATTGCCGCCGTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40-190 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWP01000820.1 Salmonella enterica strain BCW_6258 NODE_820_length_227_cov_1.48171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40 29 100.0 32 ............................. GATGCTAACCACTATTTCATCCGCCTCGACGA 101 29 100.0 32 ............................. GTGCGCAGGATATTCTCGCGGACTGCGTAGCG 162 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAACCGGCAACACAGGGTTTAACCGGTTCCCTGGCGCTG # Right flank : CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGCGTGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46-196 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWP01000839.1 Salmonella enterica strain BCW_6258 NODE_839_length_214_cov_1.22517, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46 29 100.0 32 ............................. GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 107 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 168 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGGATAAACCGTTACTGAAACGGATAAAAAATAATCAGGGGGGG # Right flank : GCAGCACTGGCTGGAGTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87623-85577 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWP01000009.1 Salmonella enterica strain BCW_6258 NODE_9_length_148982_cov_6.17207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87622 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 87561 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 87500 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 87439 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 87377 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 87316 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 87255 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 87194 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 87133 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 87072 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 87011 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 86950 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 86889 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 86828 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 86767 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 86706 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 86644 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 86583 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 86521 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 86460 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 86399 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 86338 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 86277 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 86216 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 86155 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 86094 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 86033 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 85972 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 85911 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 85850 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 85789 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 85728 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 85667 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 85606 29 89.7 0 A...........TC............... | A [85579] ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105009-103883 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWP01000009.1 Salmonella enterica strain BCW_6258 NODE_9_length_148982_cov_6.17207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105008 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 104947 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 104886 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 104825 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 104764 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 104703 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 104642 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 104581 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 104520 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 104459 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 104398 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 104337 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 104276 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 104215 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 104154 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 104093 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 104032 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 103971 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 103910 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //