Array 1 5662-5879 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEC01000014.1 Clostridium sp. AF34-10BH AF34-10BH.Scaf14, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 5662 29 100.0 33 ............................. TCAGCCATAATAAATACCTCTCTTTATCTACAC 5724 29 96.6 35 ...........C................. AAATGGCAGAAAAGCGAATGTTCAGTGATCTACAC 5788 29 96.6 34 ...........C................. ACAAGTGTATCATGTGAAAGGGGGATATCTACAC 5851 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 4 29 98.3 34 TAGTAGAAATTTTTTCTTATTATTTAACC # Left flank : CAGCCATTCATAGAAGGCACTCTCGATGGCAGCCTTGGAATTTTTCAGCTGCTCTGCTTTCTCCGTAGCATAGAGCAACTGACTCCTTCCGTCTTCGGGATTGGGCTTCCGATAGAGATATCCCTTATTCTCCAGGCTGGCAGCCCGTCTCGCCGCAGCTCCCTTGTCGATCTTCAGCTGTTCCCGCACCGCCGCCTGGGTGATCCCCGGATTATGCCGCACCAGATGGATAAAGTCAAATTCCGCAGTCCCAATCCCATCTTCCTTCATGGTCTGCACCGTGAATTTACTCACTTCTCTTGCTATTTTCGTCATTTTTCGTTCTGTTGCATCCATGGTTCTACCTCTCTGTGTTGTATTCAGATAGCAGAAAAAGATGTACCTGCATCCAAAATGGATGATAGTACATCTTTTTTGTTCTGTCAATGACTTATTTGACGAGTTAATGTTGTGTTTCTGGTTATTTTAATCTATATATGTTAAAAAAACCGATCTACATT # Right flank : CCCTTATTTTGTGGTATTGCACAATTTGGGGCTTAATATGCTTATGTTTTATGCTCTTTTTTGTTATTATTTCACTAATTTTTTTTACAATAAACCTATCTACAGATATTTGAGGCTAGGTTTGTATTTTCTGTAATTATATTATCCTTTATTCGATCACTATTGTCAATTTCAAACACAGAATATTGTATCCTATGTCCGAATCACTTTATGGGCATTTGTTCCGTTCATCTGCGCTTCGGTCTGATAGGTCAGGTTGTCCTGACCTCCATATAATTTATGAAAATATATGGAGGCCGGGCATAAAATCTTCCATCTACAAATACCTTTTTTTCTGCATAAAATCAAACCATGTTTTATTATCCTGCACAAGTTTGTTCCTTGGGAACTGTTCGTTTTCCTTCCAGTTTTCTTTAATCTGTTTTACTTCATAAAGACCTTTCAGAGCAATACAATATGCACCATTTGCATCTGCATCCTGAGGCAAAGTTTTATCTGCT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGTAGAAATTTTTTCTTATTATTTAACC # Alternate repeat : TAGTAGAAATTCTTTCTTATTATTTAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 25727-26424 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEC01000004.1 Clostridium sp. AF34-10BH AF34-10BH.Scaf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 25727 28 100.0 40 ............................ ATGCATACGCTTGAATCCATTCAACCCCAAGAAATCGTCG 25795 28 100.0 37 ............................ TAACATATTAATTATGAAGATAGTAGCTACCTGGTCA 25860 28 89.3 39 ......G..CG................. AGCAAGAGCCTAGCATCTCGTGTGTTTAGCTTTTTATCG 25927 28 85.7 146 ......TT.CG................. CTAATCGCTGTTCTATCAAAATATAACAAGGAGAAAATATAAATATGCTTTCGAAAATCATTTTAATAATCGCTATATTGCTCGTCCTTATTGTTTGGTGTATATTATTTGGCCCAGTTCACGTTCCTCTTTTTAAGGATGAACGG 26101 28 60.7 83 GAT...TT.GAT...GA...G....... TATGCTTGATATGCTTGAAAAAGAAACGAAAGAAACAGAAGAGAACGAATCGACGAAGTAGTTACCGTTGTTTTGCCAAGTCG G [26123] 26213 28 92.9 37 ...............T...........C CCACCAAAACATCTTTTGTTTTCTGCTCTGATCGTCA 26278 28 85.7 27 .......T.CG....T............ ATGGCCGTGGCAACGTTAAGCTAGTCG Deletion [26333] 26333 28 78.6 37 .....C..AAA..G.............A CATGCTGAAATATCTTTGGTAGCCTCAATCTAAATCG 26398 27 71.4 0 .C....-..AG..GA.A..........G | ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 9 28 84.9 56 CTCCTTACGTTGGAGCGTGAATTGAAAT # Left flank : TGGAATTCGGTCTGTATAAGGCGTATGGACGCTATATGGCATGCCAGGGCAAAAAGAACGGAGTAAAAGATGCGGATCTTGCCCTGTTGTTTGAAGCGATCTGTTCCATGTACGACAATGATCTGTCTGCCTGCAGAAACGGCATGTGCATGGAAAAACTGGTAGTGTTCAAACACAATAATGAGAGAGCTATCGGATCGCTCAAGAAATATGCGGACCGCGTAAAGGCTGTAAAAAAGACGGATGAAGATTATCCTCATTCCATGAATGACTATGAGGTGAAGATCGATAGAGAAAACACTCCGGAAGATGTGGAAATTTACGTGATTGACCTGTAAGAGGTCGTGAGGTGCGAATGTTATGCGGATGGGAAATAGACGGGACATTCGCACCGGATTTATATAATCATTTGTGCAAATTAGTTCATTCGAATAGCCAACAATTTGCTATCGACAATATATGATAATTTATTTATATTGTGATACTATATATCGCGGTCG # Right flank : GCAACATACCAGTGCAAAAGGAGGAAATATGTCAAGCACAATAGTTATGGCACTTATAATAGTGACAATCATCGTTACCGCATTTGGGCTAATTGTTGAGGTTCTAAAACGCGATGTAAAAAAGGCTTTTGCTTCGTTTGGTCTAATTGTTATGCTAACGGTTGGAGCCAATGTATATTATTCATTTATATTCACACAATCGGAAAACACGGAGCAGATAGTGATTGATAATCAAATTAACGTTGTATCAAATGAAACAGAGCAGAAAAATGATTCTTTATCCGAAAAAGAAACCATATTATTGGGAATAGCATTAGCTGCAATAATTTCGTTGCCGATAATTATTCCCAAGCTTCAAGACACTTTCGAAACTGAGGATGCATCGAAAAAGCAATCTTGAATTATACATTAGCATAAAGATTAATTTTCAAAAAAGCACTTAAAGAAAAAGATAATTAAAAAAGGAGAAATATATGAGCAAGGTAACAGCTGGAATCAAT # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:3, 4:0.25, 5:0, 6:0.25, 7:-1.91, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTTACGTTGGAGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 18693-12304 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEC01000017.1 Clostridium sp. AF34-10BH AF34-10BH.Scaf17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 18692 32 100.0 34 ................................ CTTATCTCCCTTCCGAACAACCATATAGTTCTCT 18626 32 100.0 34 ................................ ATTCCGAGGTTGACGTTGCTGCGGTCTTTACCTT 18560 32 100.0 33 ................................ CAATATAAACACCCACATGGCCAGACTTCCACA 18495 32 100.0 33 ................................ ATGTTGGAACTCCTTTTTATAGAATCTTTTGTC 18430 32 100.0 36 ................................ CGTCAATCATTGCTACGTTGCTAGCTGTCATAAATG 18362 32 100.0 34 ................................ AGCCGTTAAGCTTGTCTTCAATCGCCTTGAGAAT 18296 32 100.0 34 ................................ TAACGACATATTAGTTAGCTTGTAACTACACCTA 18230 32 100.0 34 ................................ TTGCTTTTAAGTAGTCCAGAGCATCTACCGCCGC 18164 32 100.0 34 ................................ AACCGCTCACGCTTGTCATAGTTAGCATTAGCAA 18098 32 100.0 33 ................................ GTCTAATGCATCAAATATTTCTTTAGCGGCTGT 18033 32 100.0 37 ................................ CAGTACATATTGATCTGCGATACACTATACGGTGCAC 17964 32 100.0 33 ................................ CGTCGTCTGCTTTTACTCGGTTATAAATGCCGT 17899 32 100.0 36 ................................ TAGGTTGTCATGCTCGTTGATTAATTTGCGGTCTAT 17831 32 100.0 35 ................................ TTCTGCTTGCTCGATCTCATATTTAAGTCGGCATT 17764 32 100.0 34 ................................ CCTGTATAAGTAGGCTTATCAGCTCGATCTACAT 17698 32 100.0 35 ................................ TCTTAATCAGGGTGTCCAGGGTTCGAGCCCCTGGC 17631 32 100.0 35 ................................ TTTTGTGCATATCCAAACCACTCATGCTGATCCTC 17564 32 100.0 34 ................................ CGAGTAATCCGGTGCATCTGCGGAGAAGACAACA 17498 32 100.0 33 ................................ AGTACAGTTGCGACTAATTTACAGTCCGGTTTG 17433 32 100.0 34 ................................ TGCGTATCTCTGATGCATAAGTCATTAATACATC 17367 32 100.0 35 ................................ ACCTCGTCAGTATTCAGCCGCTCACGCTTGTCATA 17300 32 100.0 37 ................................ CTGTAATATCTGATAACTTGTCAACCAGCTTCTGCAC 17231 32 100.0 36 ................................ AGTGCCATTGCCTGTGAACCGTACCCGGCGAATAAC 17163 32 100.0 34 ................................ TTATGGGATAATGTTTTATCTCCCATAGTCACTC 17097 32 100.0 33 ................................ CCCATATGCCGTCAACTGAGTGAGTAGTATGTG 17032 32 100.0 33 ................................ AGATAATGGAAGTAATGAACGATTCTGGTGAAA 16967 32 100.0 33 ................................ TAGTAAATAGTTATAATACAAGTCTAAGCTACC 16902 32 100.0 33 ................................ AAGTATGCGTATTTAAAAGACGAATCATCAGAC 16837 32 100.0 33 ................................ GTATATAAATGTATGCGTTATCAATAGAACAAA 16772 32 100.0 35 ................................ ACATTTTGGCGTTGAGCAAGTAGCAACCACATTAC 16705 32 100.0 33 ................................ CAAGAATCACGGTAACCTTGTTACAACAGGAAC 16640 32 100.0 33 ................................ GTGCTCGTAGACACCCATAAAATAATCTTTACC 16575 32 100.0 34 ................................ CTCGAATGTTATTTTGGTGGTTTTACTGTATTTG 16509 32 100.0 34 ................................ ATGTTGGAACTCCTTTTTATATGATCTTTTGCCT 16443 32 100.0 35 ................................ ATACTTTAGCTGACATTTAATTTGATATAGCTTAC 16376 32 100.0 34 ................................ TATCAACTCATATAAGCAGATAGCATCACCAACA 16310 32 100.0 36 ................................ ATATTTTGGTGTTGAACAAGTAGCAACCACATTACC 16242 32 100.0 34 ................................ AGCCTAATTATTTAGCAGATATTAGAGTAGAATC 16176 32 100.0 34 ................................ GATAAGGCTATCAATTAAGGAAAGTACAGCTTGC 16110 32 100.0 34 ................................ TATGAAATCTGCACTGGGCGGCATAATATGCACC 16044 32 100.0 34 ................................ GTATATAAATGTATGCGTTATCAATAGAACAAAG 15978 32 100.0 33 ................................ CGTCACCGCCGCCGCATATAGTTGCACGTTATA 15913 32 100.0 35 ................................ TATAAGATTGTCTGTCTCGTATTCGATCGGTTTGT 15846 32 100.0 33 ................................ AATAAACTGTTGGTTCATAAATTCGTCACATTC 15781 32 100.0 34 ................................ CCCAGTGATAGGGGAAGAGTTGCGTGACAGATCA 15715 32 100.0 34 ................................ CCCACTTATAATTCCCACCGGGTTTTCTACCGCT 15649 32 100.0 35 ................................ TTTGTTGTTGCACTTCATGGCTTTAGTATCAAGAC 15582 32 100.0 36 ................................ ATGAGATTGCTTTTATACTGGTTAGCGCTCCCATGC 15514 32 100.0 35 ................................ TACCACCGGCATACCAGAGAACTGACTGGAACCAT 15447 32 100.0 32 ................................ AGAGGATCTCTTTCCGGTCTATGATACCTACG 15383 32 100.0 33 ................................ CTGCGGAGAACATCTCACCGAACTCAAGGTCTG 15318 32 100.0 33 ................................ TTGCCTCACACACAAAGAAAAGAGGTCTCTTGT 15253 32 100.0 34 ................................ ACTTTGTTCACCTCACTCTTTTCTGTTGCTCTGC 15187 32 100.0 33 ................................ TTACTATTGTTACTATTGTTGTCAGGTTTTCTC 15122 32 100.0 34 ................................ TTTTCCCGGAATGCTTCGGACGGCGGCAACATAT 15056 32 100.0 33 ................................ ATTGGCTGTAGCTTTGTCAAGGCTCATGTTAGT 14991 32 100.0 34 ................................ ATAAGATTAACGTCTATGCACCGATCAATCTGTG 14925 32 100.0 34 ................................ CTACGGCACTAGATACACTTGTGGCTACTCCTGC 14859 32 100.0 33 ................................ CGTCTACTCTCTTTTTTGTGGGAATATATGACT 14794 32 100.0 34 ................................ CCTTGCTCTGAGGGAAACTTAAGAAATCTCCGTT 14728 32 100.0 33 ................................ TGAGACGGCTGCAGGTGGTGGCACCGGTAATAT 14663 32 100.0 33 ................................ TGAGCAGAGGCACTATTAAGCAAAACATCAATA 14598 32 100.0 34 ................................ GGGATCCGGAGTGTCCGCTTACATTTAACACGGT 14532 32 100.0 33 ................................ AACAGAATGCGACATCAAACTACCTCACTTTCT 14467 32 100.0 35 ................................ AGTTATATGTGGAACGGAATGTTCCAGGGAAAGTC 14400 32 100.0 35 ................................ CTTTTTCAGCATCTTTGAGCAGAAATGAAAATACT 14333 32 100.0 33 ................................ ATCCAGCACAAAAGCCTGTAGCAGTCCTTAAAA 14268 32 100.0 34 ................................ AGAACGGTGAATTACTCTACATGGCTACACATCC 14202 32 100.0 34 ................................ CTTAAACTGCACTTCATAACCCAAATCTGTAAGC 14136 32 100.0 35 ................................ ATCCATCTCTCCCTGGCAATGATCAAAGCAGTTTG 14069 32 100.0 36 ................................ GCATTATGCTTCTCTTTCCATGCCCGGCATTCATCC 14001 32 100.0 34 ................................ TTCTGAAGCTCCTCCGATAATATCTTTTCCTCCA 13935 32 100.0 35 ................................ TCTCAATGGGAGCTGCACCGCCACCGATCTTTAAG 13868 32 100.0 35 ................................ TCAAGTACTCTGCTTCCAGCACGCGCCCGTTATCC 13801 32 100.0 36 ................................ ATGCAGTGTATTCCCGGAATGGGAGTACTGGCAGGG 13733 32 100.0 36 ................................ ATGCAGTGTATTCCCGGAATGGGAGTACTGACAGGG 13665 32 100.0 33 ................................ ATTTACCTGATAGATGTTGATTCGGTCTTCGGA 13600 32 100.0 35 ................................ CTATATATCCGTCACAATTTACAATATACACAATG 13533 32 100.0 37 ................................ CTACCATGGCTTACACTACTGCTCTACGCGTGCGATC 13464 32 100.0 35 ................................ AAAAAGAGCAGGCAGAATGTTTATCTGCACAGGAA 13397 32 100.0 34 ................................ TTCTGTCGCCACAATACCGGATAAGTTGATATCT 13331 32 100.0 36 ................................ TTTGCATTTACGTTTGTTTTTGCACGATATTGCTTT 13263 32 100.0 35 ................................ CTGCGCAATGAATAAAATATTTTGCCCCGTTGTAC 13196 32 100.0 34 ................................ TACCGGGGTAGCGTAAATGGCGTGCAAGCCAATT 13130 32 100.0 34 ................................ ATGTCAATACAGCGTGTGCTGCGAAGAGCTTTCC 13064 32 100.0 34 ................................ CGGTTTCCGGCTGTACCTTAGTTGCAGCATCGGC 12998 32 100.0 34 ................................ GATGCTATCACCGAAGAGGTTTCCGGAGCCGGTG 12932 32 100.0 34 ................................ ATGTATGAGCCGGTATTTATCAAGACACAGGCAA 12866 32 100.0 33 ................................ CCTGGAGTTAAAGAGCAGCTGTGCCTCATCTAT 12801 32 100.0 34 ................................ AAAGTAAGCCTTGACTGGTTAGTAACTGGAAAAG 12735 32 100.0 35 ................................ TCCGGAAAATAAAGGTAAATCGTCCGGGTCAGGAC 12668 32 100.0 34 ................................ ATCAAATTCACATCAACGCATCTGTCCAACTGCG 12602 32 100.0 33 ................................ CGGTAACACTACCACCATAGCCTCCGGTATAGG 12537 32 100.0 35 ................................ ATCTGATGTTAGACTGCGGACTCCGGCGTCAGGAA 12470 32 100.0 35 ................................ ATTTCTGTCTTCATCCGGACTGCCTCCAATCTGTT 12403 32 93.8 36 .............C.......C.......... GCACGGACGATGGGGATAATCTGTTTTTTCAACATG 12335 32 84.4 0 ...........T.C.......ACC........ | ========== ====== ====== ====== ================================ ===================================== ================== 97 32 99.8 34 GTCGCTCCCCTCGTGGGAGCGTGGATTGAAAT # Left flank : GGTTATCCTGCATTCCTGTGGAAGTGAGGTGCGATATGTTAGTATTGATCACATACGATGTCAACACAGAAAATGCGACCGGAAAAGCGAGATTACGCAAAGTGGCAAAACAATGCGTTAATTATGGCAGAAGAGTTCAGAATTCTGTGTTTGAATGTATTTTGGATAATGCTCAGAGCATTGCATTGAAGGCAACACTTGAGGATATTATTGATACAGAAAAGGACAGTCTTCGATTCTACTATCTGGGTAATAAATATCAGACCAAGATTGAACATATCGGGGTAGACAGAGGAATCGCCCCGGATCAGACACTGATTTTGTAACTGATGCGAAAGCCAAGCATACATAAAATGCCTGGGGGATTCGCACCTTATAAATTATGCGATTTATTGAAATAACATACAAAGATATTTTTAATTAAAATAATTTGTTGTTAAGATTAAATATTTTAGACAATTTTTGCTGAGAGAAAAGAGAACTTTTTGGCGAAAATTGCT # Right flank : AGAAAAGACAATCGTATATCATGTACTATGTGATTACATAGAAGGAGGATATCTAATTGAGTAAGACGGTTAGGCAAAGTGATTGGGCAACGGAAACGCATATGGAAGCCCTATTTTGGAGAAACGGAATGACACCGGAAGAATACGAGATGGAAAACAGATATTTGAGTAAAAATTTTTATAAGCAAAAAGATGGAAACTATATGCCACTTTGGATGCAAGAAGAGAACATGAAAGCATAATTAGTTCTTTGGATTTTTTTATTTACAGACAAGAAATACTTTATATTGAAATCAAAACAGATTGTAATAATTTCTTATACTATTCTATTTTATGTCTGATATTGTACAACATGTTGATAATTACAATATCTTTTAAAGTCAGTTTTAAGAAAATCTATTTATATTTCCTACGTAACAATTTGAATTTTTAATGTTATGTCGCATGGCTTTGTGTAAATTTGTGTATTTCGCTATTGATTTTGTGTAAGATTGTGTATA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.90,-5.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //