Array 1 82706-82860 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWXJ01000013.1 Clostridium sporogenes strain IFR 18/147 contig00013, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 82706 24 100.0 42 ........................ TACATGATTTAAGACATTCACACGCTAGCTTATTAATATTTA 82772 24 100.0 41 ........................ CTAATAATATTGGAGATGTTGAATGTCCTTTAAGAGATTTA 82837 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 3 24 100.0 42 AATACATCTTATGTTATTGTTCAA # Left flank : TGTTTGATTACTCTTTGTCATTATAATCATCCTTTTTATTTTCAATTTTATGTTTTTCTATTTCTAATTTAGCTTTTTTTCTCTTATTATAAGTCAGTTTGATTAGCAGTAGCAATATTATTATAATTGATATTATTAATAAATAATTTAGTATTTTATTCATGCACTTGTGATATAATATAGGAAAGGTTGAGGGGTTTAGTCCCCCTCTTTTAACCTTTTGATTTCTAGCCTTAGTTTTTTTATTTCTAACTCGGTCTTTCTGTTCTGCAAATTCAGTTGCCGTATTGTTAGTAATGAAATTACTAAGGCTATTAGTTTTCCTATAATTTCTATCACTTGCTCACCTCCTTATCAATTACTATACTTATATTATACTATGCATAGTATAGGAAATCAACCCCTTTTTATTAAAATATTTCAATATTATATAATAATTTTCCAATTAAATAATAAAAAAAATGGTATCTATAGCATAAGCTACAACTACCATTTTTAAT # Right flank : ACCATAATAAAATAGCCATTCATTAATTTTAAGAATAACATAGAACTATTGATTTTACAAGGTTCTAAAGAAAGTTTTCCAACCGATTGAGATAATTTAAAATTTATATAGAAAATCCACCTTAAAGCATTGCATATCAATGATTAGGATAGGTTTTAAAATTAAAGTAGGTTGGAAAAATTAAAGGTACTCCCATAATAGAAGTACCTTTAAAATTAATATCTTATATACTTTCCATAAACATATCCACCATTATTTCACTATATGTCAGCATTCTAGGAATGGGAGTACATTCCTCCTTGCTTATGTATATTAGATATACTGTAAATGTCTAATACCACACTTTAAAATTTATGCTACCTAAACTAATTTATTTTTGTTTCATTAATAATATTAATTTATTGTTATTCCCTTTATATTTTTTCTTTTTAAGGTTATAATTAAGATATGATTTTAAAAATAAGGAGGTATATGAATGAGTATAAATATATTAATTAGAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATACATCTTATGTTATTGTTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 232445-235442 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWXJ01000002.1 Clostridium sporogenes strain IFR 18/147 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 232445 29 100.0 36 ............................. ACATTTCCAACTATTAATCCTTTTTCTTTAGTTATG 232510 29 100.0 37 ............................. CAATTTAATTATAGCACACTATAATAATAATGCAATA 232576 29 100.0 37 ............................. TAATAATTTATGCGAAATAGATTATGAAGCTCAAAGA 232642 29 100.0 35 ............................. TGTTTATTAGTACTATCACTATCTTTAGTATCATC 232706 29 100.0 35 ............................. AATTCAAAAGTTTTTAGCTCTTTAAGTTCATGTAA 232770 29 100.0 37 ............................. GATATTAAACGAATTTTTGGGTGGGTAGATAATGATA 232836 29 100.0 37 ............................. GAGGAAGCCTTTGACAAATTAAGGAGTGCTATATCTG 232902 29 100.0 36 ............................. TTTAAATCAGCAACGTCAAAAACTTGAAAATATTCT 232967 29 100.0 38 ............................. AGAACAGTTAAAGGAAAAAGATGTTATAGAAGAATTAA 233034 29 100.0 37 ............................. AAATTAAAATTATTTTTAATATTGAATAATGTTTCTA 233100 29 100.0 37 ............................. AGCTTTAAAGATGCTTATTATGATATTAAAGACCATA 233166 29 100.0 37 ............................. AGATTTAAAAGATAGGGCTTCAGAATTAGCTAAAGAC 233232 29 100.0 39 ............................. TAATGAAAGAGATTAAACCTTATATTGATGATTTATATG 233300 29 100.0 37 ............................. TCTTGCATTGTTGCTATACCAGATTCAATATTATCTA 233366 29 100.0 37 ............................. AAATCAGAATACATCTTCTTATCACTTTCAGATAAAA 233432 29 100.0 36 ............................. GACAAAAGACCTTTAATGTCAGACCTCAGAGAATCT 233497 29 100.0 37 ............................. ATTTTTGAAAGGAAGTGAATAAATGGCTTTTAATTTA 233563 29 100.0 37 ............................. TGACTTTGCTTATAGTTTCATATCCTTTTTTCTTACC 233629 29 100.0 37 ............................. TTCCCTAGGAACATCTAAATAAGTAGAATGATAAACT 233695 29 100.0 38 ............................. ATTAGTATTTTAGCATCATCAATTGAACTAGGTGCAGT 233762 29 100.0 37 ............................. TGTTTTGCTTGTTACTATATATTCTTTTAATATATTT 233828 29 100.0 37 ............................. CTTTTTAATGTGGAATGTAAAGAACTTCAAGCGTTAG 233894 29 100.0 37 ............................. ACAGTTAAAACAGCAAGAAAAATAGCGGATTGTTTAG 233960 29 100.0 37 ............................. GAGAAAATGAGAAACTTCTTAACTAAGAATATGAATA 234026 29 100.0 37 ............................. GCAGATAGAACAAAACAATTATTAGAAAATCAAAATC 234092 29 100.0 37 ............................. GTGGATCAACATCTTGAATAATATAAGATTTAGTATC 234158 29 100.0 37 ............................. AGATTTAAAAGATAGGGCTTCAAAGTTAGCTCAAGAC 234224 29 100.0 37 ............................. ATATTTTTTATATTACAAATAAGATTACTAACCCTGT 234290 29 100.0 37 ............................. GTATCTTCTTCTAAATCATCTGAATACTCTTCACCCT 234356 29 100.0 38 ............................. ATATTTAAAGTTGGAGAAAATAGAATAAGTTGGACAGG 234423 29 100.0 37 ............................. ACTACTAACTAGGTGCTTTTTACATACCTAAAATAGT 234489 29 100.0 37 ............................. TAATTTCATTTGGAAGATATGCACCTGCTGAAGAATA 234555 29 100.0 37 ............................. AAGTTGTCTACTAAACTTTTCATATTCTATATCTTTT 234621 29 100.0 36 ............................. AAATATAGCTCGTGATTGGTTTACTAATCCAGAAAA 234686 29 100.0 37 ............................. ACTTCCTTGGAGAAAAAAAGATAACATATCAGATTGG 234752 29 100.0 38 ............................. CCCTTTGTATTTCTTTACCCTGCTATCTAAGTTATCCC 234819 29 100.0 39 ............................. CATTGGATATAGAAACTAATAACATGGGGAGAAGTGCTA 234887 29 96.6 36 .T........................... ACATTATAATGGAGCAAAAGCGGTAGGAATGAATAT 234952 29 96.6 38 .T........................... TTATCTAAAAATTTAATTTCATTTGCAGATTCTTCAAG 235019 29 96.6 37 .T........................... ATGATTAAATCAATATAATCAGGGTCAGCATGTTCTA 235085 29 96.6 37 .T........................... TTACACACTTTGTGTATTCCAGATATAAATATATCAT 235151 29 96.6 37 .T........................... GATAATGCAGCAGATCATGAAGGAATTATCAATTTTA 235217 29 96.6 37 .T........................... ATAGACAGGCTTTGTACTTCCTGTTGGGCTTACTTCA 235283 29 96.6 36 .T........................... GTGTATAATCCTTCATATCAAATACTTTACCATCTA 235348 29 96.6 36 .T........................... AACAGCAATAAAAATAATTAAATTAGTAGAATTGAG 235413 29 89.7 0 .............A......G..A..... | T [235415] ========== ====== ====== ====== ============================= ======================================= ================== 46 29 99.2 37 CCTTTATATTAACTATGTGATATGTAAAT # Left flank : AGGTGATGATATATATAAACCATTAAAGGCTTGGTGGTGATAATTTATGTTTGTTATATTGACATATGATATAGAAGAAAAGAGAATTAATAGAGTTAGAAAAACGCTAAAAAAATACTTAGTTTGGACTCAAAATTCTGTGTTTGAGGGAGAAATAACAGAAGGAAAGCTACATAAATGCCTTTCTGATGTTAATAAATTAATTGACAAGAAGTTTGATTCAGTATATGTTTATAGAGTAAAAAATTCTAAAAATATAAAAAAGGATGTAGTTGGAATAGAAAAGAGTTTTGATGAATTATTTTTATAATTAGTTTTGCATTAAACCTAAATTTAAATTAATTAAGGTTAAACTATTGAAATTACTAGCTTTCTTGACAATAAAAAATAAATACTAAAAACGCTACTGAAGGTTTACTGCAAAATGTGGAAAATATGATAGATTAAGCATTGCTATAAATACAGTAATGGCGGTGGTTACAGGACTTTTGAATTTTAGG # Right flank : TCATGCTTCATCTATCATTAAATCATGATCAACAATGGATTCTATATACTCAAATATTGAGAACCTAGCGGTATCAAAATCATAATATGTAGCTAAATTTACTTCTTCTTTCTTTAGCGAAGCGAGAAAGGGTTCAATATAGACATTATCATAGGGATAATCTTTACCGCTGAAAGAGTGAATTATATTAATTTCTTTAAATATGCTTAACTGTTATCAAGCTTAATTTAAGATTTTTGGAAAGATTTATGCTAGATTGCTGTAAAATTAATCAAGGTAGAAAGAAATCTGCCTTGATTTTATCTGCTTCTATAAGTTTGTATATTCATCCTATGAAGGATTTTAAAATTTATTATAGAATACTTAGTGTAGTTAATGAATGAAATAATGAAATTTGCTATATGATGTTAGGATGTTTTTAATAGTAAATAAAAGAATACTTATTTATTTAGGAAAATAAAAAGGGGGTTATACTAATGAAGATAATAGTTATTGGACCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //